cluster # 8081

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Oryza sativa
cluster # 8081 cluster # 8081 Sequences # 5 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_8081#0 length = 934 sequences # 3

consensus_8081#1 length = 288 sequences # 1
consensus_8081#2 length = 159 sequences # 1

consensusID : consensus_8081#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 934
fasta sequence

                              [TTTTTTTTTGAAACGGAAGAAGTATGATATATGCTGGTCCTTCAACC-TTTTGATTATTTCAACTTTTCAAGTACCAACACTCTTACAGTACAATAAATATGCTAGATTACTATCAATCTCTAGGGACGTTTCATA-TGATCAAAATAACAAGTTATTCTTCCTGTGTATTAGTGTATATGCTATACTACTATACAATCTATGTTACATATTGAAGTTCTGATTCTCCAAAAGAAAACATCATACGAATCTCCATGCATGTTCTGTGGTATGGTCAGGATTAGGAATGCTGATTTCTCATCCCCTCCTTTTTTTGCTTGTGCATTTCCTCACTCAGCACTGAGAACAACATCTTCTATGCGATAATTAGTTACTGAGTACTTACTCAGATTTCCAAGAACATCACCATCAGTCTAGATCTCGTACGTCATTCCTACCCGCAACAGTCTATTATGGGGAACACATGTGATCTTCTCTGGTTGCCTGAAGTTCTTCCTAATGAAATTGTACACATAATCAACTATTATTTTTCTTAAGGAAATCGGCG-TGGGGTCTGGCACCAAATTAGTTTTCTCCCAGCAGATGGACTACA-CATTCCCCATCTCTTGGTGAATTGACTGTATCTCATCCATGCATCCATTTCTTGGTTCCGTCGTGTGTTGGTCTGAATTGTTTCTGGACGACATTGCATCTTGAACTTCAGAGGTAGGATCCGTTACACCTCCTATTTCTTTTATTGATTCTCCTTCAAGGGAATGACTACTTTGGCTGTAGAGGGATTCCTCGTGGATGAATTGCTTCAAGTTTTCAATAACTAAGCTCTCAAATTCTGCTGGATCTTCTACTTTATCATTGTATCCATAGCGCACCACACATCGGAATACCCTGTATTCTTTTGGCTCCACATATCGGAAGAGAAACCGTTCCTTTGTTTCTA]

[-] EMBL BI812278             [TTTTTTTTTGAAACGGAAGAAGTATGATATATGCTGGTCCTTCAACCTTTTTGATTATTTCAACTTTTCAAGTACCAACACTCTTACAGTACAATAAATATGCTAGATTACTATCAATCTCTAGGGACGTTTCATATTGATCAAAATAACAAGTTATTCTTCCTGTGTATTAGTGTATATGCTATACTACTATACAATCTATGTTACATATTGAAGTTCTGATTCTCCAAAAGAAAACATCATACGAATCTCCATGCATGTTCTGTGGTATGGTCAGGATTAGGAATGCTGATTTCTCATCCCCTCCTTTTTTGGCTTGTGCATTTCCTCACTCAGCACTGAGAACAACATCTTCTATGCGATAATTAGTTACTGAGTACTTACTCAGATTTCCAAGAACATCACCATCAGTCTAGATCTCGTACGTCATTCCTACCCGCAACAGTCTATTATGGGGAACACATGTGATCTTCTCTGGTTGCCTGAAGTTCTTCCTAATGAAATTGTACACATAATCAACTATTATTTTTCTTAAGGAAATCGGCG TGGGGTCTGGCACCAAATTAGTTTTCTCCCAGCAGATGGACTACA CATTCCCCATCTCTTG                                                                                                                                                                                                                                                                                                                                         ]
[-] EMBL BI813687             [                  ttttTATGATATATGCTGGTCCTTCAACC TTTTGATTATTTCAACTTTTCAAGTACCAACACTCTTACAGTACAATAAATATGCTAGATTACTATCAATCTCTAGGGACGTTTCATA TGATCAAAATAACAAGTTATTCTTCCTGTGTATTAGTGTATATGCTATACTACTATACAATCTATGTTACATATTGAAGTTCTGATTCTCCAAAAGAAAACATCATACGAATCTCCATGCATGTTCTGTGGTATGGTCAGGATTAGGAATGCTGATTTCTCATCCCCTCCTTTTTTTGCTTGTGCATTTCCTCACTCAGCACTGAGAACAACATCTTCTATGCGATAATTAGTTACTGAGTACTTACTCAGATTTCCAAGAACATCACCATCAGTCTAGATCTCGTACGTCATTCCTACCCGCAACAGTCTATTATGGGGAACACATGTGATCTTCTCTGGTTGCCTG                                                                                                                                                                                                                                                                                                                                                                                                                                                                     ]
[+] EMBL CB630240             [                                                                                                                                            TCAAAATAACAAGTTATTCTTCCTGTGTATTAGTGTATATGCTATACTACTATACAATCTATGTTACATATTGAAGTTCTGATTCTCCAAAAGAAAACATCATACGAATCTCCATGCATGTTCTGTGGTATGGTCAGGATTAGGAATGCTGATTTCTCATCCCCTCCTTTTTTTGCTTGTGCATTTCCTCACTCAGCACTGAGAACAACATCTTCTATGCGATAATTAGTTACTGAGTACTTACTCAGATTTCCAAGAACATCACCATCAGTCTAGATCTCGTACGTCATTCCTACCCGCAACAGTCTATTATGGGGAACACATGTGATCTTCTCTGGTTGCCTGAAGTTCTTCCTAATGAAATTGTACACATAATCAACTATTA TTTTCTTAAGGAAATCGGCGTTTGGTTCTGCCACCACATTAG TTTCTCCCAGCAGATGGACTACACCATTCCCCATCTCTTTGTGAATTGACTGTATCTCATCCATGCATCCATTTCTTGGTTCCGTCGTGTGTTGGTCTGAATTGTTTCTGGACGACATTGCATCTTGAACTTCAGAGGTAGGATCCGTTACACCTCCTATTTCTTTTATTGATTCTCCTTCAAGGGAATGACTACTTTGGCTGTAGAGGGATTCCTCGTGGATGAATTGCTTCAAGTTTTCAATAACTAAGCTCTCAAATTCTGCTGGATCTTCTACTTTATCATTGTATCCATAGCGCACCACACATCGGAATACCCTGTATTCTTTTGGCTCCACATATCGGAAGAGAAACCGTTCCTTTGTTTCTA]




>consensus_8081#0
TTTTTTTTTGAAACGGAAGAAGTATGATATATGCTGGTCCTTCAACCTTTTGATTATTTC
AACTTTTCAAGTACCAACACTCTTACAGTACAATAAATATGCTAGATTACTATCAATCTC
TAGGGACGTTTCATATGATCAAAATAACAAGTTATTCTTCCTGTGTATTAGTGTATATGC
TATACTACTATACAATCTATGTTACATATTGAAGTTCTGATTCTCCAAAAGAAAACATCA
TACGAATCTCCATGCATGTTCTGTGGTATGGTCAGGATTAGGAATGCTGATTTCTCATCC
CCTCCTTTTTTTGCTTGTGCATTTCCTCACTCAGCACTGAGAACAACATCTTCTATGCGA
TAATTAGTTACTGAGTACTTACTCAGATTTCCAAGAACATCACCATCAGTCTAGATCTCG
TACGTCATTCCTACCCGCAACAGTCTATTATGGGGAACACATGTGATCTTCTCTGGTTGC
CTGAAGTTCTTCCTAATGAAATTGTACACATAATCAACTATTATTTTTCTTAAGGAAATC
GGCGTGGGGTCTGGCACCAAATTAGTTTTCTCCCAGCAGATGGACTACACATTCCCCATC
TCTTGGTGAATTGACTGTATCTCATCCATGCATCCATTTCTTGGTTCCGTCGTGTGTTGG
TCTGAATTGTTTCTGGACGACATTGCATCTTGAACTTCAGAGGTAGGATCCGTTACACCT
CCTATTTCTTTTATTGATTCTCCTTCAAGGGAATGACTACTTTGGCTGTAGAGGGATTCC
TCGTGGATGAATTGCTTCAAGTTTTCAATAACTAAGCTCTCAAATTCTGCTGGATCTTCT
ACTTTATCATTGTATCCATAGCGCACCACACATCGGAATACCCTGTATTCTTTTGGCTCC
ACATATCGGAAGAGAAACCGTTCCTTTGTTTCTA

consensusID : consensus_8081#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 288
fasta sequence

                              [TTTTTTTTTTGAAAGGGGAGAAGTATGATATATGCTGGTCCTTCAACTTTTTGATTATTTCAATTTTCAAGTAACAAACTTCTTAAAGTAAATAGATATGCTAAATTATATCAATGTCTAGGGACGTTTCATATTGGATCAAAATAACAAGTTATATCTTCCTGGGTATTAGTGTATATGCTATAATAATATACAATTCTATGTTACATATGAAGTTCTGATTCATCTGAATAAGAAAACATCATAGAAGTCTCGATGCATGTTCATGTGGTATGGTCAGGATGACGG]

[-] EMBL BI813191             [TTTTTTTTTTGAAAGGGGAGAAGTATGATATATGCTGGTCCTTCAACTTTTTGATTATTTCAATTTTCAAGTAACAAACTTCTTAAAGTAAATAGATATGCTAAATTATATCAATGTCTAGGGACGTTTCATATTGGATCAAAATAACAAGTTATATCTTCCTGGGTATTAGTGTATATGCTATAATAATATACAATTCTATGTTACATATGAAGTTCTGATTCATCTGAATAAGAAAACATCATAGAAGTCTCGATGCATGTTCATGTGGTATGGTCAGGATGACGG]




>consensus_8081#1
TTTTTTTTTTGAAAGGGGAGAAGTATGATATATGCTGGTCCTTCAACTTTTTGATTATTT
CAATTTTCAAGTAACAAACTTCTTAAAGTAAATAGATATGCTAAATTATATCAATGTCTA
GGGACGTTTCATATTGGATCAAAATAACAAGTTATATCTTCCTGGGTATTAGTGTATATG
CTATAATAATATACAATTCTATGTTACATATGAAGTTCTGATTCATCTGAATAAGAAAAC
ATCATAGAAGTCTCGATGCATGTTCATGTGGTATGGTCAGGATGACGG

consensusID : consensus_8081#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 159
fasta sequence

                              [AACGGAAAGGAATTAACTGTGGTGTGATGTGTTGGATGCTAAATGATGGANAAACGTGCCCCTGAGGAGGATTNGATGAAGTGAATGCTAGCATATTTATTGTACTGTAAGAGTGTTGGTACTTGAAAAGTTGAAATAATCAAAAGGTTGAAGGAAAAA]

[+] EMBL BQ909253             [AACGGAAAGGAATTAACTGTGGTGTGATGTGTTGGATGCTAAATGATGGANAAACGTGCCCCTGAGGAGGATTNGATGAAGTGAATGCTAGCATATTTATTGTACTGTAAGAGTGTTGGTACTTGAAAAGTTGAAATAATCAAAAGGTTGAAGGAAAAA]




>consensus_8081#2
AACGGAAAGGAATTAACTGTGGTGTGATGTGTTGGATGCTAAATGATGGANAAACGTGCC
CCTGAGGAGGATTNGATGAAGTGAATGCTAGCATATTTATTGTACTGTAAGAGTGTTGGT
ACTTGAAAAGTTGAAATAATCAAAAGGTTGAAGGAAAAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_8081#0      -TTTTTTTTTGAAACGGAAGAAGTATGATATATGCTGGTCCTTCAACCTTTTGATTATTT 59
consensus_8081#1      TTTTTTTTTTGAAAGGGGAGAAGTATGATATATGCTGGTCCTTCAACTTTTTGATTATTT 60
consensus_8081#2      ------------------------------------------------------------
                                                                                  

consensus_8081#0      CAACTTTTCAAGTACCAACACTCTTACAGTACAATAAATATGCTAGATTACTATCAATCT 119
consensus_8081#1      CAA-TTTTCAAGTAACAAACTTCTTAAAGTA-AATAGATATGCTAAATTA-TATCAATGT 117
consensus_8081#2      --------------------------------AACGGAAAGG---AATTA-----ACTGT 20
                                                      **   * * *    ****     * * *

consensus_8081#0      CTAGGGACGTTTCATAT--GATCAAAATAACAAGTTAT-TCTTCCTGTGTATTAGTGTAT 176
consensus_8081#1      CTAGGGACGTTTCATATTGGATCAAAATAACAAGTTATATCTTCCTGGGTATTAGTGTAT 177
consensus_8081#2      GGTGTGATGTGTTGGAT---GCTAAATGATGGANAAACGTGCCCCTGAGGAGGATTNGAT 77
                         * ** ** *   **      ***  *   *   *  *   **** * *  * *  **

consensus_8081#0      ATGCTATACTACTATACAAT-CTATGTTACATATTGAAGTTCTGATTCTCC---AAAAGA 232
consensus_8081#1      ATGCTATAATAATATACAATTCTATGTTACATAT-GAAGTTCTGATTCATCTGAATAAGA 236
consensus_8081#2      GAAGTG-AATGCTA-GCATATTTATTGTAC-TGTAAGAGTGTTGGTACTTG---AAAAGT 131
                          *  * *  **  **    ***  *** * *   ***  ** * *      * *** 

consensus_8081#0      AAACATCATACGAATCTCCATGCATGTTC-TGTGGTATGGTCAGGATTAGGAATGCTGAT 291
consensus_8081#1      AAACATCATAGAAGTCTCGATGCATGTTCATGTGGTATGGTCAGGATGACGG-------- 288
consensus_8081#2      TGAAATAATCAAAAGGTTGAAGGAAAAA-------------------------------- 159
                        * ** **   *   *  * * *                                    

consensus_8081#0      TTCTCATCCCCTCCTTTTTTTGCTTGTGCATTTCCTCACTCAGCACTGAGAACAACATCT 351
consensus_8081#1      ------------------------------------------------------------
consensus_8081#2      ------------------------------------------------------------
                                                                                  

consensus_8081#0      TCTATGCGATAATTAGTTACTGAGTACTTACTCAGATTTCCAAGAACATCACCATCAGTC 411
consensus_8081#1      ------------------------------------------------------------
consensus_8081#2      ------------------------------------------------------------
                                                                                  

consensus_8081#0      TAGATCTCGTACGTCATTCCTACCCGCAACAGTCTATTATGGGGAACACATGTGATCTTC 471
consensus_8081#1      ------------------------------------------------------------
consensus_8081#2      ------------------------------------------------------------
                                                                                  

consensus_8081#0      TCTGGTTGCCTGAAGTTCTTCCTAATGAAATTGTACACATAATCAACTATTATTTTTCTT 531
consensus_8081#1      ------------------------------------------------------------
consensus_8081#2      ------------------------------------------------------------
                                                                                  

consensus_8081#0      AAGGAAATCGGCGTGGGGTCTGGCACCAAATTAGTTTTCTCCCAGCAGATGGACTACACA 591
consensus_8081#1      ------------------------------------------------------------
consensus_8081#2      ------------------------------------------------------------
                                                                                  

consensus_8081#0      TTCCCCATCTCTTGGTGAATTGACTGTATCTCATCCATGCATCCATTTCTTGGTTCCGTC 651
consensus_8081#1      ------------------------------------------------------------
consensus_8081#2      ------------------------------------------------------------
                                                                                  

consensus_8081#0      GTGTGTTGGTCTGAATTGTTTCTGGACGACATTGCATCTTGAACTTCAGAGGTAGGATCC 711
consensus_8081#1      ------------------------------------------------------------
consensus_8081#2      ------------------------------------------------------------
                                                                                  

consensus_8081#0      GTTACACCTCCTATTTCTTTTATTGATTCTCCTTCAAGGGAATGACTACTTTGGCTGTAG 771
consensus_8081#1      ------------------------------------------------------------
consensus_8081#2      ------------------------------------------------------------
                                                                                  

consensus_8081#0      AGGGATTCCTCGTGGATGAATTGCTTCAAGTTTTCAATAACTAAGCTCTCAAATTCTGCT 831
consensus_8081#1      ------------------------------------------------------------
consensus_8081#2      ------------------------------------------------------------
                                                                                  

consensus_8081#0      GGATCTTCTACTTTATCATTGTATCCATAGCGCACCACACATCGGAATACCCTGTATTCT 891
consensus_8081#1      ------------------------------------------------------------
consensus_8081#2      ------------------------------------------------------------
                                                                                  

consensus_8081#0      TTTGGCTCCACATATCGGAAGAGAAACCGTTCCTTTGTTTCTA 934
consensus_8081#1      -------------------------------------------
consensus_8081#2      -------------------------------------------