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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8088#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1438 fasta sequence
[ACCCCCACTTCCGCAGCTTCGCCTTCCCGCCTCACTCTCCCAAAAAACCCACCGCCATGGCGCCGCATTTCGTACTGGGCCCCGGCGTACCGCAGCAGCTGCTCATCCAGTCGGCGGCCGCCGGCGACCTCCCCGCCTTCAAGAAGTTTGCTCGTATGCTGGACGGCGGGAAGGGGCGGCTCAAGGAGGCGGTGGAGGCCGTGAAGAACCGCGGCGCTGGGGCTCTGCACCAAGCCGCCCGCTACGGGAGGACCGCGATGTGCGCGTACATGGTCGAGGAGCTCCAGGTGGACATCGACGCCGCCGATGAGTTAGGACATTGCGAGATAGTAAAGGTCTTACTGGTGAAAGGTGCTAATGTTGATTCATCTTCTGACCATGGGACACCACTGCATGTTGCTGCCTCAAAAAGTCAGGATGGTTGTATGAAGATTTTGTTGGACCACCATGCAGATTGTAACAAGACATTCTCTACAGTTTGTACACCTCTCATTGCTGCGATGATGGGTCGCTCACTGAAATGTTGTAAGCTTTTGATTGAGGCTGGTGCTGATGTTAAGGGTGTTGGTACTTTTACCCCCTTAATAGTTGCTGCAACTGAAGGCTTAACTGATTTCTATAAGTGCTTACTGGAGGGTGGTGCTGATCCTGATGTGCCTGATAAATTTGGGTTTCTGCCCATAGAAATTGCTGCACGTCAGAACAGGAGGAAAGATGTGGAGATCCTACTTCCAGTAACTTCTCGTATTCCATCTGTGCATGATTGGAGTGTTGATGGGATGATTACTTATGTAAACAAACAGGTGGAGGTTGACCCTTTCTTCAAAATAAGACCAGCTGATCTGAAGTTGGAAGGAAATAGGGCATACATGAGAAAAGACTATCTTACTGCCGCAAAACTCTACAATATGGCGATCGAGCACGACCCTGAAGATATGACCTTGTACTCTAACACGAGCGTTTGCTGGCTTAAGATGGGTAAAGGAATGAATGCTTTGGAAACTGCCCAAGTTTGCAGGATATTGCGCCCTGATTGGCCCAAGGGCTGCTACAGGGAAGGGACCGCTCACATGTTCATGAAGGACTATGAAAAGGCCTGCAATGCATTTCTTGATGGTTTCAAACTGGACCCAGCGAATATTGAGATTGAAAATGCGCTACGGGAGGCTTTGAAATCATTGAAGGCGTCTCGTGCTGCTTGAATTGCCTATCTGTTCGAGAGAGAACTAACTTTTGTACATGAGTAACACTTGTGTTTGCAAAGCCGTCAGCCATGCCACTAGTTGCTGAAGGTTTTCACCAGGTTCATGTATTCTGTGACTCCCATCAGACCACCAGCTAGTATCAATTACACCGTATAATTATATCTTAGTACTTTTTTTACTTGCGGAGAATAGTATTATCGCTGATTATGAACAAACTATTATCACTGATTATG]
[+] EMBL AK110813 [ACCCCCACTTCCGCAGCTTCGCCTTCCCGCCTCACTCTCCCAAAAAACCCACCGCCATGGCGCCGCATTTCGTACTGGGCCCCGGCGTACCGCAGCAGCTGCTCATCCAGTCGGCGGCCGCCGGCGACCTCCCCGCCTTCAAGAAGTTTGCTCGTATGCTGGACGGCGGGAAGGGGCGGCTCAAGGAGGCGGTGGAGGCCGTGAAGAACCGCGGCGCTGGGGCTCTGCACCAAGCCGCCCGCTACGGGAGGACCGCGATGTGCGCGTACATGGTCGAGGAGCTCCAGGTGGACATCGACGCCGCCGATGAGTTAGGACATTGCGAGATAGTAAAGGTCTTACTGGTGAAAGGTGCTAATGTTGATTCATCTTCTGACCATGGGACACCACTGCATGTTGCTGCCTCAAAAAGTCAGGATGGTTGTATGAAGATTTTGTTGGACCACCATGCAGATTGTAACAAGACATTCTCTACAGTTTGTACACCTCTCATTGCTGCGATGATGGGTCGCTCACTGAAATGTTGTAAGCTTTTGATTGAGGCTGGTGCTGATGTTAAGGGTGTTGGTACTTTTACCCCCTTAATAGTTGCTGCAACTGAAGGCTTAACTGATTTCTATAAGTGCTTACTGGAGGGTGGTGCTGATCCTGATGTGCCTGATAAATTTGGGTTTCTGCCCATAGAAATTGCTGCACGTCAGAACAGGAGGAAAGATGTGGAGATCCTACTTCCAGTAACTTCTCGTATTCCATCTGTGCATGATTGGAGTGTTGATGGGATGATTACTTATGTAAACAAACAGGTGGAGGTTGACCCTTTCTTCAAAATAAGACCAGCTGATCTGAAGTTGGAAGGAAATAGGGCATACATGAGAAAAGACTATCTTACTGCCGCAAAACTCTACAATATGGCGATCGAGCACGACCCTGAAGATATGACCTTGTACTCTAACACGAGCGTTTGCTGGCTTAAGATGGGTAAAGGAATGAATGCTTTGGAAACTGCCCAAGTTTGCAGGATATTGCGCCCTGATTGGCCCAAGGGCTGCTACAGGGAAGGGACCGCTCACATGTTCATGAAGGACTATGAAAAGGCCTGCAATGCATTTCTTGATGGTTTCAAACTGGACCCAGCGAATATTGAGATTGAAAATGCGCTACGGGAGGCTTTGAAATCATTGAAGGCGTCTCGTGCTGCTTGAATTGCCTATCTGTTCGAGAGAGAACTAACTTTTGTACATGAGTAACACTTGTGTTTGCAAAGCCGTCAGCCATGCCACTAGTTGCTGAAGGTTTTCACCAGGTTCATGTATTCTGTGACTCCCATCAGACCACCAGCTAGTATCAATTACACCGTATAATTATATCTTAGTACTTTTTTTACTTGCGGAGAATAGTATTATCGCTGATTATGAACAAACTATTATCACTGATTATG]
consensusID : consensus_8088#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1045 fasta sequence
[AGGAGCTGATGTTGATTCATCTTCTGACTGTGGGACGCCACTGCATATTGCAGCCGTGAAAAGTCATGATGGCTGTATGAAGATTTTATTGGACCACCATGCAGATTGTAATAAGGTATTTTCCACATTTTATACACCCCTCATCGCAGCGCTTATGGTTCGCTCATTGAAATGTGTGAAGCTTCTGATTAAGGCTGGTGCTGATATTAAGGGTGTTGGTACTTTTACCCCCTTAATTGCTGCTGCAACTGAAGGCTTAACTGATTTCTATAAGTGCTTACTCGAGGCTGGTGCTGATCCTAATGTGCCTGATGAAAACAGACGGAAAGATGTGGAGATCCTACTTCCAGTAACTTCTCGTATTCCATCTGTGTATGATTGGAGTGTTGATGGGATAATTACTTATGTAAACAAAAATGTGCAGGATGACCCCATGTACAAAATAAGACCAGCTGATCTGAAGTTAGAAGGAAGTAGGGCATAAAAGAGAGAGGACTATCTTACTGCCACAAAACTCTACACTATGGCGACGAATCTTGAACCTGAAGATGGAACTTGTACTCGAATAGGAGCATTTGCTTGGCTTAAGATGGGTGAAGGAATGAAAGCTTTGACAGATGCTCACCTCTGCAGGATGTTGTGTCCCGATTGGCCAAAGGCCTGCTACAGGGAAGGGGCTGCTCACATGTTCTTAAAGGACTGATAAGGCTTGCGATGCATTTCTTGATGGTCTTAAATTGGACCCAGCGAATATGGAGATTGAAAATGGTCTACGGGAGGCTTTCAAATCATTGAAGAAATCTCGTGCTGCCTGAATTACCTGTCAGTTCAAGAATTACATGTCAGTTCAAGACTCAGAACTTGTACTATGTAATTAACTCAATCTGGAGTCCGGAAAACAAGAACCTGGTAAAAACCTTTTGCAACTGGCACGGCTTTGTAAATTTTACTTGAAACTGATCGCAACTATTATCACTGAATGTGAGGTTCCAATCTACGAGTATTTTGTTGGACGTCGAGCAGTTACTTCAGTATAATCAAGCAA]
[+] EMBL AK119566 [AGGAGCTGATGTTGATTCATCTTCTGACTGTGGGACGCCACTGCATATTGCAGCCGTGAAAAGTCATGATGGCTGTATGAAGATTTTATTGGACCACCATGCAGATTGTAATAAGGTATTTTCCACATTTTATACACCCCTCATCGCAGCGCTTATGGTTCGCTCATTGAAATGTGTGAAGCTTCTGATTAAGGCTGGTGCTGATATTAAGGGTGTTGGTACTTTTACCCCCTTAATTGCTGCTGCAACTGAAGGCTTAACTGATTTCTATAAGTGCTTACTCGAGGCTGGTGCTGATCCTAATGTGCCTGATGAAAACAGACGGAAAGATGTGGAGATCCTACTTCCAGTAACTTCTCGTATTCCATCTGTGTATGATTGGAGTGTTGATGGGATAATTACTTATGTAAACAAAAATGTGCAGGATGACCCCATGTACAAAATAAGACCAGCTGATCTGAAGTTAGAAGGAAGTAGGGCATAAAAGAGAGAGGACTATCTTACTGCCACAAAACTCTACACTATGGCGACGAATCTTGAACCTGAAGATGGAACTTGTACTCGAATAGGAGCATTTGCTTGGCTTAAGATGGGTGAAGGAATGAAAGCTTTGACAGATGCTCACCTCTGCAGGATGTTGTGTCCCGATTGGCCAAAGGCCTGCTACAGGGAAGGGGCTGCTCACATGTTCTTAAAGGACTGATAAGGCTTGCGATGCATTTCTTGATGGTCTTAAATTGGACCCAGCGAATATGGAGATTGAAAATGGTCTACGGGAGGCTTTCAAATCATTGAAGAAATCTCGTGCTGCCTGAATTACCTGTCAGTTCAAGAATTACATGTCAGTTCAAGACTCAGAACTTGTACTATGTAATTAACTCAATCTGGAGTCCGGAAAACAAGAACCTGGTAAAAACCTTTTGCAACTGGCACGGCTTTGTAAATTTTACTTGAAACTGATCGCAACTATTATCACTGAATGTGAGGTTCCAATCTACGAGTATTTTGTTGGACGTCGAGCAGTTACTTCAGTATAATCAAGCAA]
[+] EMBL AK064117 [AGGAGCTGATGTTGATTCATCTTCTGACTGTGGGACGCCACTGCATATTGCAGCCGTGAAAAGTCATGATGGCTGTATGAAGATTTTATTGGACCACCATGCAGATTGTAATAAGGTATTTTCCACATTTTATACACCCCTCATCGCAGCGCTTATGGTTCGCTCACTGAAATGTGTGAAGCTTCTGATTAAGGCTGGTGCTGATATTAAGGGTGTTGGTACTTTTACCCCCTTAATTGCTGCTGCAACTGAAGGCTTAACTGATTTCTATAAGTGCTTACTCGAGGCTGGTGCTGATCCTAATGTGCCTGATGAAAACAGACGGAAAGATGTGGAGATCCTACTTCCAGTAACTTCTCGTATTCCATCTGTGTATGATTGGAGTGTTGATGGGATAATTACTTATGTAAACAAAAATGTGCAGGATGACCCCATGTACAAAATAAGACCAGCTGATCTGAAGTTAGAAGGAAGTAGGGCATAAAAGAGAGAGGACTATCTTACTGCCACAAAACTCTACACTATGGCGACGAATCTTGAACCTGAAGATGGAACTTGTACTCGAATAGGAGCATTTGCTTGGCTTAAGATGGGTGAAGGAATGAAAGCTTTGACAGATGCTCACCTCTGCAGGATGTTGTGTCCCGATTGGCCAAAGGCCTGCTACAGGGAAGGGGCTGCTCACATGTTCTTAAAGGACTGATAAGGCTTGCGATGCATTTCTTGATGGTCTTAAATTGGACCCAGCGAATATGGAGATTGAAAATGGTCTACGGGAGGCTTTCAAATCATTGAAGAAATCTCGTGCTGCCTGAATTACCTGTCAGTTCAAGAATTACATGTCAGTTCAAGACTCAAAACTTGTACTATGTAATTAACTCAATCTGGAGTCCGGAAAACAAGAACCTGGTAAAAACCTTTTGCAACTGGCACGGCTTTGTAAATTTTACTTGAAACTGATCGCAACT ]
consensusID : consensus_8088#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 175 fasta sequence
[ATGGAGTGAAGGAGTAGAAACAACTATTATCGCTGAATGTGAGGTTCCAATCTACGAGTATTTTGTTGGACGTCGAGCAGTTACTTCAGTATAATCAAGCAATTGGTATAATAA-ACTTTGTATCCACAATAATCGCACGACTAAATACAGGTAATGGTTACATGAAAAAAAAAAA]
[-] EMBL CF327955 [ATGGAGTGAAGGAGTAGAAACAACTATTATCGCTGAATGTGAGGTTCCAATCTACGAGTATTTTGTTGGACGTCGAGCAGTTACTTCAGTATAATCAAGCAATTGGTATAATAA ACTTTGTATCCACAATAATCGCACGACTAAATACAGGTAATGGTTACATGAAAAAAAAAAA]
[+] EMBL CF327954 [ TGGACTGAAGGAGTAGAAACAACTATTATCACTGAATGTGAGGTTCCAATCTACGAATATTTTGTTGGACGTCGAGCAGTTACTTCAGTATAATCAATCAATTGGTATAATAAGACTTTGTATCCACAATAATCGCACGAC AAATACAGG AATGGTTACATGAGATAAAAAA ]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_8088#0 ACCCCCACTTCCGCAGCTTCGCCTTCCCGCCTCACTCTCCCAAAAAACCCACCGCCATGG 60
consensus_8088#1 ------------------------------------------------------------
consensus_8088#2 ------------------------------------------------------------
consensus_8088#0 CGCCGCATTTCGTACTGGGCCCCGGCGTACCGCAGCAGCTGCTCATCCAGTCGGCGGCCG 120
consensus_8088#1 ------------------------------------------------------------
consensus_8088#2 ------------------------------------------------------------
consensus_8088#0 CCGGCGACCTCCCCGCCTTCAAGAAGTTTGCTCGTATGCTGGACGGCGGGAAGGGGCGGC 180
consensus_8088#1 ------------------------------------------------------------
consensus_8088#2 ------------------------------------------------------------
consensus_8088#0 TCAAGGAGGCGGTGGAGGCCGTGAAGAACCGCGGCGCTGGGGCTCTGCACCAAGCCGCCC 240
consensus_8088#1 ------------------------------------------------------------
consensus_8088#2 ------------------------------------------------------------
consensus_8088#0 GCTACGGGAGGACCGCGATGTGCGCGTACATGGTCGAGGAGCTCCAGGTGGACATCGACG 300
consensus_8088#1 ------------------------------------------------------------
consensus_8088#2 ------------------------------------------------------------
consensus_8088#0 CCGCCGATGAGTTAGGACATTGCGAGATAGTAAAGGTCTTACTGGTGAAAGGTGCTAATG 360
consensus_8088#1 -------------------------------------------------AGGAGCTGATG 11
consensus_8088#2 ------------------------------------------------------------
consensus_8088#0 TTGATTCATCTTCTGACCATGGGACACCACTGCATGTTGCTGCCTCAAAAAGTCAGGATG 420
consensus_8088#1 TTGATTCATCTTCTGACTGTGGGACGCCACTGCATATTGCAGCCGTGAAAAGTCATGATG 71
consensus_8088#2 ------------------------------------------------------------
consensus_8088#0 GTTGTATGAAGATTTTGTTGGACCACCATGCAGATTGTAACAAGACATTCTCTACAGTTT 480
consensus_8088#1 GCTGTATGAAGATTTTATTGGACCACCATGCAGATTGTAATAAGGTATTTTCCACATTTT 131
consensus_8088#2 ------------------------------------------------------------
consensus_8088#0 GTACACCTCTCATTGCTGCGATGATGGGTCGCTCACTGAAATGTTGTAAGCTTTTGATTG 540
consensus_8088#1 ATACACCCCTCATCGCAGCGCTTATGGTTCGCTCATTGAAATGTGTGAAGCTTCTGATTA 191
consensus_8088#2 ------------------------------------------------------------
consensus_8088#0 AGGCTGGTGCTGATGTTAAGGGTGTTGGTACTTTTACCCCCTTAATAGTTGCTGCAACTG 600
consensus_8088#1 AGGCTGGTGCTGATATTAAGGGTGTTGGTACTTTTACCCCCTTAATTGCTGCTGCAACTG 251
consensus_8088#2 ------------------------------------------------------------
consensus_8088#0 AAGGCTTAACTGATTTCTATAAGTGCTTACTGGAGGGTGGTGCTGATCCTGATGTGCCTG 660
consensus_8088#1 AAGGCTTAACTGATTTCTATAAGTGCTTACTCGAGGCTGGTGCTGATCCTAATGTGCCTG 311
consensus_8088#2 ------------------------------------------------------------
consensus_8088#0 ATAAATTTGGGTTTCTGCCCATAGAAATTGCTGCACGTCAGAACAGGAGGAAAGATGTGG 720
consensus_8088#1 ATGAA------------------------------------AACAGACGGAAAGATGTGG 335
consensus_8088#2 ------------------------------------------ATGGAGTGAAGGAGTAGA 18
* * *** ** *
consensus_8088#0 AGATCCTACTTCCAGTAACTTCTCGTATTCCATCTGTGCATGATTGGAGTGTTGATGGGA 780
consensus_8088#1 AGATCCTACTTCCAGTAACTTCTCGTATTCCATCTGTGTATGATTGGAGTGTTGATGGGA 395
consensus_8088#2 AACAACTATTATCGCTGAATGTGAGGTTCCAATCTACGAGTATTTTGT-TGGACGTCGAG 77
* *** * * * * * * * * **** * * ** * ** * *
consensus_8088#0 TGATTACTT--ATGTAAACAAACAGGTGGAG--GTTGACCCTTTCTTCAAAATAAGACCA 836
consensus_8088#1 TAATTACTT--ATGTAAACAAAAATGTGCAG--GATGACCCCATGTACAAAATAAGACCA 451
consensus_8088#2 CAGTTACTTCAGTATAATCAAGCAATTGGTATAATAAACTTTGTATCCACAATAATCGCA 137
****** * *** *** * ** ** * * ** ***** **
consensus_8088#0 GCTGATCTGAAGTTGGAAGGAAATAGGGCATACATGAGAAAAGACTATCTTACTGCCGCA 896
consensus_8088#1 GCTGATCTGAAGTTAGAAGGAAGTAGGGCATAAAAGAGAGAGGACTATCTTACTGCCACA 511
consensus_8088#2 ---------CGACTAAATACAGGTAATGGTTACATGAAAAAAAAAAA------------- 175
* * * ** * ** * ** * * * *
consensus_8088#0 AAACTCTACAATATGGCGATCGAGCACGACCCTGAAGATATGACCTTGTACTCTAACACG 956
consensus_8088#1 AAACTCTACACTATGGCGACGAATCTTGAACCTGAAGATG-GAACTTGTACTCGAATAGG 570
consensus_8088#2 ------------------------------------------------------------
consensus_8088#0 AGCGTTTGCT-GGCTTAAGATGGGTAAAGGAATGAATGCTTTGGAAACTGCCCAAGTTTG 1015
consensus_8088#1 AGCATTTGCTTGGCTTAAGATGGGTGAAGGAATGAAAGCTTTGACAGATGCTCACCTCTG 630
consensus_8088#2 ------------------------------------------------------------
consensus_8088#0 CAGGATATTGCGCCCTGATTGGCCCAAGGGCTGCTACAGGGAAGGGACCGCTCACATGTT 1075
consensus_8088#1 CAGGATGTTGTGTCCCGATTGGCCAAAGGCCTGCTACAGGGAAGGGGCTGCTCACATGTT 690
consensus_8088#2 ------------------------------------------------------------
consensus_8088#0 CATGAAGGACTATGAAAAGGCCTGCAATGCATTTCTTGATGGTTTCAAACTGGACCCAGC 1135
consensus_8088#1 CTTAAAGGACT--GATAAGGCTTGCGATGCATTTCTTGATGGTCTTAAATTGGACCCAGC 748
consensus_8088#2 ------------------------------------------------------------
consensus_8088#0 GAATATTGAGATTGAAAATGCGCTACGGGAGGCTTTGAAATCATTGAAGGCGTCTCGTGC 1195
consensus_8088#1 GAATATGGAGATTGAAAATGGTCTACGGGAGGCTTTCAAATCATTGAAGAAATCTCGTGC 808
consensus_8088#2 ------------------------------------------------------------
consensus_8088#0 TGCTTGAATTGCCTATCTGTTCGAGAGAGAACTAACTTTTGTACATGAGT-AACACTTGT 1254
consensus_8088#1 TGCCTGAATTACCTGTCAGTTCAAGAATTA---CATGTCAGTTCAAGACTCAGAACTTGT 865
consensus_8088#2 ------------------------------------------------------------
consensus_8088#0 GTTTGCAAAGCCGTCAGCCATGCCACTAGTTGCTGAAGGTTTTCACCAGGTTCATGTATT 1314
consensus_8088#1 ACT----ATGTAATTAACTCAATCTGGAGTC-CGGAAAACAAGAACCTGGTAAAAACCTT 920
consensus_8088#2 ------------------------------------------------------------
consensus_8088#0 CTGTGACTCCCATCAGACCACCAGCTAGTATCAATTACACCGTATAATTATATCTTAGTA 1374
consensus_8088#1 TTGCAACTGGCA-CGGCTTTGTAAATTTTACTTGAAACTGATCGCAACTAT-TATCACTG 978
consensus_8088#2 ------------------------------------------------------------
consensus_8088#0 CTTTTTTTACTTGCGGAGAATAGTATTATCGCTGATTATGAACAAACTATTATCAC-TGA 1433
consensus_8088#1 AATGTGAGGTTCCAATCTACGAGTATT-TTGTTGGACGTCGAGCAGTTACTTCAGTATAA 1037
consensus_8088#2 ------------------------------------------------------------
consensus_8088#0 TTATG--- 1438
consensus_8088#1 TCAAGCAA 1045
consensus_8088#2 --------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||