These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_809#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 766 fasta sequence [AGGGCTGCTCCCCCTCCCGCCGCCGCCACCGCCACCGCCGAGGAAAGCGAGGAGACGAAGGGCGGACATGACGGTGGAGAAGGTGGACGCGACCGTCGCCGACTTCGACGCCCACTTCGACAAGCTCTTCGCCGCCGGGGACGACGCCGAGGGCAAGGTGAAGCTGCTCCTCTTCCTCGCCGACCGCGACGCCTCCTCCAACCAAACCTGGTGCCCCGACTGCAACGTGGCGGAGCCGGTGATCTACGACAGGGTGGAGGCGGCGGCGAAGGGGAAGGAGAAGGACGTGGTGCTGCTGCGCGCGTACGTCGGCGACAAGCCGACGTGGAGGGACCCGGCGCACCCGTGGAGGGCTGACCCGCGGTTCAGGCTCACCGGCGTCCCCACGCTCATCAGGTGGGAGAATGGCGCCGAGGCGGCGCGCCTCGGGGACGACGAGGCCCACCTCGCCGACAAGGTCGACGCCGTAGTCAACGCCGCCAATTGAAACCAAAGGCACAGCTTCTTGTATGATCTCTGCTAGTATCTCTCTGATCTCGAGTGAATCCAAGTGATGAGAAAATGATGGTTATTGCGATGGATGAACTTGCTTGTAACTTGGAAATGGAAGATAAAACAAAGTTGGTGTTCATTTCAAANNNNAAANNNNNNNNNNNNNNTNNNNNNNNNNNNNNNNNNNNNNNNCCTTGAGGGGGGCCCGGCCCCAATCGCCCTATGGGAGTGGTTACGCGCCTCCTGGGCGGCTTTACAACGCGGATGGGAAACC] [+] EMBL BE040654 [AGGGCTGCTCCCCCTCCCGCCGCCGCCACCGCCACCGCCGAGGAAAGCGAGGAGACGAAGGGCGGACATGACGGTGGAGAAGGTGGACGCGACCGTCGCCGACTTCGACGCCCACTTCGACAAGCTCTTCGCCGCCGGGGACGACGCCGAGGGCAAGGTGAAGCTGCTCCTCTTCCTCGCCGACCGCGACGCCTCCTCCAACCAAACCTGGTGCCCCGACTGCAACGTGGCGGAGCCGGTGATCTACGACAGGGTGGAGGCGGCGGCGAAGGGGAAGGAGAAGGACGTGGTGCTGCTGCGCGCGTACGTCGGCGACAAGCCGACGTGGAGGGACCCGGCGCACCCGTGGAGGGCTGACCCGCGGTTCAGGCTCACCGGCGTCCCCACGCTCATCAGGTGGGAGAATGGCGCCGAGGCGGCGCGCCTCGGGGACGACGAGGCCCACCTCGCCGACAAGGTCGACGCCGTAGTCAACGCCGCCAATTGAAACCAAAGGCACAGCTTCTTGTATGATCTCTGCTAGTATCTCTCTGATCTCGAGTGAATCCAAGTGATGAGAAAATGATGGTTATTGCGATGGATGAACTTGCTTGTAACTTGGAAATGGAAGATAAAACAAAGTTGGTGTTCATTTCAAANNNNAAANNNNNNNNNNNNNNTNNNNNNNNNNNNNNNNNNNNNNNNCCTTGAGGGGGGCCCGGCCCCAATCGCCCTATGGGAGTGGTTACGCGCCTCCTGGGCGGCTTTACAACGCGGATGGGAAACC] consensusID : consensus_809#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 656 fasta sequence [CCGCCGCCACCGCCACCGCCGAGGAAAGCGAGGAGACGAAGGGCGGACATGACGGTGGAGAAGGTGGACGCGACCGTCGCCGACTTCGACGCCCACTTCGACAAGCTCTTCGCCGCCGGGGACGACGCCGAGGGCAAGGTGAAGCTGCTCCTCTTCCTCGCCGACCGCGACGCCTCCTCCAACCAAACCTGGTGCCCCGACTGCAACGTGGCGGAGCCGGTGATCTACGACAGGGTGGAGGCGGCGGCGAAGGGGAAGGAGAAGGACGTGGTGCTGCTGCGCGCGTACGTCGGCGACAAGCCGACGTGGAGGGACCCGGCGCACCCGTGGAGGGCTGACCCGCGGTTCAGGCTCACCGGCGTCCCCACGCTCATCAGGTGGGAGAATGGCGCCGCGGCGGCGCGCCTCGGGGACGACGAGGCCCACCTCGCCGACAAGGTCGACGCCGTAGTCAACGCCGCCAATTGAAACCAAAGGCACAGCTTCTTGTATGATCTCTGCTAGTATCTCTCTGATCTCGAGTGAATCCAAGTGATGAGAAAATGATGGTTATTGCGATGGATGAACTTGCTTGTAACTTGGAAATGGAAGAATAAAACAAAGTTTGGTGGTCAATTTCAAAAAAAAAAAAAAAAAAAAACTCGAGGGGGGGCCCC] [+] EMBL BE041042 [CCGCCGCCACCGCCACCGCCGAGGAAAGCGAGGAGACGAAGGGCGGACATGACGGTGGAGAAGGTGGACGCGACCGTCGCCGACTTCGACGCCCACTTCGACAAGCTCTTCGCCGCCGGGGACGACGCCGAGGGCAAGGTGAAGCTGCTCCTCTTCCTCGCCGACCGCGACGCCTCCTCCAACCAAACCTGGTGCCCCGACTGCAACGTGGCGGAGCCGGTGATCTACGACAGGGTGGAGGCGGCGGCGAAGGGGAAGGAGAAGGACGTGGTGCTGCTGCGCGCGTACGTCGGCGACAAGCCGACGTGGAGGGACCCGGCGCACCCGTGGAGGGCTGACCCGCGGTTCAGGCTCACCGGCGTCCCCACGCTCATCAGGTGGGAGAATGGCGCCGCGGCGGCGCGCCTCGGGGACGACGAGGCCCACCTCGCCGACAAGGTCGACGCCGTAGTCAACGCCGCCAATTGAAACCAAAGGCACAGCTTCTTGTATGATCTCTGCTAGTATCTCTCTGATCTCGAGTGAATCCAAGTGATGAGAAAATGATGGTTATTGCGATGGATGAACTTGCTTGTAACTTGGAAATGGAAGAATAAAACAAAGTTTGGTGGTCAATTTCAAAAAAAAAAAAAAAAAAAAACTCGAGGGGGGGCCCC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_809#0 AGGGCTGCTCCCCCTCCCGCCGCCGCCACCGCCACCGCCGAGGAAAGCGAGGAGACGAAG 60 consensus_809#1 -------------------CCGCCGCCACCGCCACCGCCGAGGAAAGCGAGGAGACGAAG 41 ***************************************** consensus_809#0 GGCGGACATGACGGTGGAGAAGGTGGACGCGACCGTCGCCGACTTCGACGCCCACTTCGA 120 consensus_809#1 GGCGGACATGACGGTGGAGAAGGTGGACGCGACCGTCGCCGACTTCGACGCCCACTTCGA 101 ************************************************************ consensus_809#0 CAAGCTCTTCGCCGCCGGGGACGACGCCGAGGGCAAGGTGAAGCTGCTCCTCTTCCTCGC 180 consensus_809#1 CAAGCTCTTCGCCGCCGGGGACGACGCCGAGGGCAAGGTGAAGCTGCTCCTCTTCCTCGC 161 ************************************************************ consensus_809#0 CGACCGCGACGCCTCCTCCAACCAAACCTGGTGCCCCGACTGCAACGTGGCGGAGCCGGT 240 consensus_809#1 CGACCGCGACGCCTCCTCCAACCAAACCTGGTGCCCCGACTGCAACGTGGCGGAGCCGGT 221 ************************************************************ consensus_809#0 GATCTACGACAGGGTGGAGGCGGCGGCGAAGGGGAAGGAGAAGGACGTGGTGCTGCTGCG 300 consensus_809#1 GATCTACGACAGGGTGGAGGCGGCGGCGAAGGGGAAGGAGAAGGACGTGGTGCTGCTGCG 281 ************************************************************ consensus_809#0 CGCGTACGTCGGCGACAAGCCGACGTGGAGGGACCCGGCGCACCCGTGGAGGGCTGACCC 360 consensus_809#1 CGCGTACGTCGGCGACAAGCCGACGTGGAGGGACCCGGCGCACCCGTGGAGGGCTGACCC 341 ************************************************************ consensus_809#0 GCGGTTCAGGCTCACCGGCGTCCCCACGCTCATCAGGTGGGAGAATGGCGCCGAGGCGGC 420 consensus_809#1 GCGGTTCAGGCTCACCGGCGTCCCCACGCTCATCAGGTGGGAGAATGGCGCCGCGGCGGC 401 ***************************************************** ****** consensus_809#0 GCGCCTCGGGGACGACGAGGCCCACCTCGCCGACAAGGTCGACGCCGTAGTCAACGCCGC 480 consensus_809#1 GCGCCTCGGGGACGACGAGGCCCACCTCGCCGACAAGGTCGACGCCGTAGTCAACGCCGC 461 ************************************************************ consensus_809#0 CAATTGAAACCAAAGGCACAGCTTCTTGTATGATCTCTGCTAGTATCTCTCTGATCTCGA 540 consensus_809#1 CAATTGAAACCAAAGGCACAGCTTCTTGTATGATCTCTGCTAGTATCTCTCTGATCTCGA 521 ************************************************************ consensus_809#0 GTGAATCCAAGTGATGAGAAAATGATGGTTATTGCGATGGATGAACTTGCTTGTAACTTG 600 consensus_809#1 GTGAATCCAAGTGATGAGAAAATGATGGTTATTGCGATGGATGAACTTGCTTGTAACTTG 581 ************************************************************ consensus_809#0 GAAATGGAAGA-TAAAACAAAGTT-GGTGTTCATTTCAAANNNNAAANNNNNNNNNNNNN 658 consensus_809#1 GAAATGGAAGAATAAAACAAAGTTTGGTGGTCAATTTCAAAAAAAAAAAAAAAAAAAAAC 641 *********** ************ **** *** ** ** *** consensus_809#0 NTNNNNNNNNNNNNNNNNNNNNNNNNCCTTGAGGGGGGCCCGGCCCCAATCGCCCTATGG 718 consensus_809#1 TCGAGGGGGGGCCCC--------------------------------------------- 656 consensus_809#0 GAGTGGTTACGCGCCTCCTGGGCGGCTTTACAACGCGGATGGGAAACC 766 consensus_809#1 ------------------------------------------------ |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||