These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8108#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1677 fasta sequence [CGTCGCTGCTCTCCCCGACTCCCCGTCCTCCTTCCCTGCGACGACGGCGGCGGCGGCGGCGGTGGCGTGGCGGCTCTTTGTCAAGGTAATTTATCCTATTCGCAAAACTGGTACATCAGGAGAAATAACCAAGTGAACGTGATAGTAGTATACCACTGGTAGTGCACCACGGCAAAGCGAGGTGTCCTGATTCCTGAACAGCAGGATGCGGTTTGCGGTGACAAAAGTATGTGGTGGTGGGGCAAAGGCACGGGCAGGCATGCTCCAGATTGCTGGCAGTAACATTGAAACACCAGCGCTACTTCTGTCCACACGCAAGGGGCTTCCAGCATTTGTGTCCCGTGATCTCCTTGCATCCCTCTCTCTCCCTGACTCTCTCCTTCTCCATGTGTGCCCTACCCATTTTATGGAAGGCCCTCCATCAAAAACAATATCAAATATTAGTGGTTTGCATCATATGTTGGGTCTTCCTGATCATATCCTCATAGCCGCAGCTGGTGATTCTATTGAGAGTTTACCAACAAGTGAAGCAAGCAATAAATTTGGTGCTTCCTTTGAGACACCAGCTGGCCGAAGACTGGTTAAACCATCAGATTATATGGAATTGATTTCCTGCATGAAGCCTAATTTGTGGGCAAGTTTGGCAGATGAGGTTCCAGCTTGGGTTACTGAGAAACGAAATAAAGTCTCTGTTGAGCGCACATTACGCTGGCTTGATGCATGTATTGCTTTGGATGAGGATTCTGGTGCAAATACTTTAGGTGTAGTTGTGGGTGGATCTAGTATAGAACTACGGAAGCTATGTGCCACTGAAGTGTCAAAGAGGAATGTGTCAGGTTTTTGGATAGGAGGGTTGGGCTTTGGAGACAGTCCTGAAGAACGTTGCAGTATACTCGATGCTGCAGTGGGTTGCTTGCCTCCGGAGAAACCTCGAGTTGTCTCTAGGCTTGGTCTTCCAGAGGAGGTTTTGGAGGGTGTAGCTGCTGGTATCGACCTCTTTGACTCTACGTACATTTACCAGCTTACTATGGGTGGTTTCGCACTGATCTTCCCCATTGACATGGTTGGAGAAAAGATGCAGAATGGTTCACTCAACAGTAGTGAT-GGAGATTTTACAAAGATTAATCTGCGTGCAACGACATATCGGAAAGACACGTCAAGGATAGTTGATAGCTGTAGCTGTTTCACATGCCAGAACCACACTCGTGCTTACCTTAATCATTTGCTCAATGTCCATGAGATGCTGGCTCAGATTCTACTGGAGATACACAATACACATCATTACCTTTGCTTTTTCCGGTTGATACGAGACACGATCAAAACCGGACAGTTTGATCGCTTTCGGCAGCAGTTTGTTCAGGACAGGCGTGCTTATCTTGCAGCTGCTGTGATCTAACAAGGATTAACTTCTCCCTAGATGTACACTGTTAGACCTCTTGAGGCTTGCATCAAACTAAATTGAGAAAGCTGCAAGTTAGATTCATTCAAATCCACAATCCCTCTCTTCGAAAATCCAAGTGACTGAACAACTTTTTGCAAATCCCTGGAAAGAAAGAAGAAAGGAACAAATAGATAGTGCTAGATGGCTGAATTATTAACTTGCCTTTGGATGAATTTTCAGAAATTTTCGGGTTCATTAGTCAGTTTGTGTGCTAACTGTTCATGTTATTATAGCTG] [+] EMBL AK106467 [CGTCGCTGCTCTCCCCGACTCCCCGTCCTCCTTCCCTGCGACGACGGCGGCGGCGGCGGCGGTGGCGTGGCGGCTCTTTGTCAAGGTAATTTATCCTATTCGCAAAACTGGTACATCAGGAGAAATAACCAAGTGAACGTGATAGTAGTATACCACTGGTAGTGCACCACGGCAAAGCGAGGTGTCCTGATTCCTGAACAGCAGGATGCGGTTTGCGGTGACAAAAGTATGTGGTGGTGGGGCAAAGGCACGGGCAGGCATGCTCCAGATTGCTGGCAGTAACATTGAAACACCAGCGCTACTTCTGTCCACACGCAAGGGGCTTCCAGCATTTGTGTCCCGTGATCTCCTTGCATCCCTCTCTCTCCCTGACTCTCTCCTTCTCCATGTGTGCCCTACCCATTTTATGGAAGGCCCTCCATCAAAAACAATATCAAATATTAGTGGTTTGCATCATATGTTGGGTCTTCCTGATCATATCCTCATAGCCGCAGCTGGTGATTCTATTGAGAGTTTACCAACAAGTGAAGCAAGCAATAAATTTGGTGCTTCCTTTGAGACACCAGCTGGCCGAAGACTGGTTAAACCATCAGATTATATGGAATTGATTTCCTGCATGAAGCCTAATTTGTGGGCAAGTTTGGCAGATGAGGTTCCAGCTTGGGTTACTGAGAAACGAAATAAAGTCTCTGTTGAGCGCACATTACGCTGGCTTGATGCATGTATTGCTTTGGATGAGGATTCTGGTGCAAATACTTTAGGTGTAGTTGTGGGTGGATCTAGTATAGAACTACGGAAGCTATGTGCCACTGAAGTGTCAAAGAGGAATGTGTCAGGTTTTTGGATAGGAGGGTTGGGCTTTGGAGACAGTCCTGAAGAACGTTGCAGTATACTCGATGCTGCAGTGGGTTGCTTGCCTCCGGAGAAACCTCGAGTTGTCTCTAGGCTTGGTCTTCCAGAGGAGGTTTTGGAGGGTGTAGCTGCTGGTATCGACCTCTTTGACTCTACGTACATTTACCAGCTTACTATGGGTGGTTTCGCACTGATCTTCCCCATTGACATGGTTGGAGAAAAGATGCAGAATGGTTCACTCAACAGTAGTGAT GGAGATTTTACAAAGATTAATCTGCGTGCAACGACATATCGGAAAGACACGTCAAGGATAGTTGATAGCTGTAGCTGTTTCACATGCCAGAACCACACTCGTGCTTACCTTAATCATTTGCTCAATGTCCATGAGATGCTGGCTCAGATTCTACTGGAGATACACAATACACATCATTACCTTTGCTTTTTCCGGTTGATACGAGACACGATCAAAACCGGACAGTTTGATCGCTTTCGGCAGCAGTTTGTTCAGGACAGGCGTGCTTATCTTGCAGCTGCTGTGATCTAACAAGGATTAACTTCTCCCTAGATGTACACTGTTAGACCTCTTGAGGCTTGCATCAAACTAAATTGAGAAAGCTGCAAGTTAGATTCATTCAAATCCACAATCCCTCTCTTCGAAAATCCAAGTGACTGAACAACTTTTTGCAAATCCCTGGAAAGAAAGAAGAAAGGAACAAATAGATAGTGCTAGATGGCTGAATTATTAACTTGCCTTTGGATGAATTTTCAGAAATTTTCGGGTTCATTAGTCAGTTTGTGTGCTAACTGTTCATGTTATTATAGCTG] [+] EMBL CB096620 [ CTAGTATAGAACTACGGAAGCTATGTGCCACTGAAGTGTCAAAGAGGAATGTGTCAGGTTTTTGGATAGGAGGGTTGGGCTTTGGAGACAGTCCTGAAGAACGTTGCAGTATACTCGATGCTGCAGTGGGTTGCTTGCCTCCGGAGAAACCTCGAGTTGTCTCTAGGCTTGGTCTTCCAGAGGAGGTTTTGGAGGGTGTAGCTGCTGGTATCGACCTCTTTGACTCTACGTACATTTACCAGCTTACTATGGGTGGTTTCGCACTGATCTTCCCCATTGACATGGTTGGAGAAAAGATGCAGAATGGTTCACTCGACAGTAGTGATGGGAGATTTTACAAAGATTAATCTGCGTGCAACGACATATCGGAAAGACACGTCAAGGATAGTTGATAGCTGTAGCTGTTTCACATGCCAGAACCACACTCGTGCTTACCTTAATCATTTGCTCAATGTCCATGAGATGCTGGCTCAGATTCTACTGGAGATACACAATACACATCATTACCTTTGCTTTTTCCGGTTGATACGAGACACGATCAAAACCGGACAGTTTGATCGCTTTCGGCAGCAGTTTGTTCAGGACAGGCGTGCTTATCTTGCAGCTGCTGTGATCTAACAAGGATTAACTTCTCCCTAGATGTACACTGNTAGACCTCTTGAGGCTTGCATCAAACTAAATTGAGAAAGCTGCAAGTTAGATTCATTCAAATCCACAATCCCTCTCTTCGAAAATCCAAGTGACTGAACAACTTTTTGCAAATCCCTGG AAGGAAGAAGAAtgacca ] [-] EMBL CF309209 [ ATTACCTTTGCTTTTTCCGGTTGATACGAGACACGATCAAAACCGGACAGTTTGATCGCTTTCGGCAGCAGTTTGTTCAGGACAGGCGTGCTTATCTTGCAGCTGCTGTGATCTAACAAGGATTAACTTCTCCCTAGATGTACACTGTTAGACCTCTTGAGGCTTGCATCAAACTAAATTGAGAAAGCTGCAAGTTAGATTCATTCAAATCCACAATCCCTCTCTTCGAAAATCCAAGTGACTGAACAACTTTTTGCAAATCCCTGGAAAGAAAGAAGAAAGGAACAAAaa ] consensusID : consensus_8108#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 699 fasta sequence [AGGACGAGACAAGGGGGGTCTTCCAGAGGAGGTTTTGGAGGGTGTAGCTGCTGGTATCGACCTCTTTGACTCTACGTACATTTACCAGCTTACTATGGGTGGTTTCGCACTGATCTTCCCCATTGACATGGTTGGAGAAAAGATGCAGAATGGTTCACTCAACAGTAGTGATGGAGATTTTACAAAGATTAATCTGCGTGCAACGACATATCGGAAAGACACGTCAAGGATAGTTGATAGCTGTAGCTGTTTCACATGCCAGAACCACACTCGTGCTTACCTTAATCATTTGCTCAATGTCCATGAGATGCTGGCTCAGATTCTACTGGAGATACACAATACACATCATTACCTTTGCTTTTTCCGGTTGATACGAGACACGATCAAAACCGGACAGTTTGATCGCTTTCGGCAGCAGTTTGTTCAGGACAGGCGTGCTTATCTTGCAGCTGCTGTGATCTAACAAGGATTAACTTCTCCCTAGATGTACACTGTTAGATCTCTTGAGGCTTTCATCAAACTAAATTGAGAAAGCTGCAAGTTAGATTCATTCAAATCCACAATCCCTCTCTTCGAAAATCCAAGTGACTGAACAACTTTTTGCAAATCCCTGGAAAGAAAGAAGAAATGAACAAATAGATAGTGCTAGATGGCTGAATTATTAACTTGCCTTTGGGATGAATTTTCAGAAATTTTTCG] [+] EMBL CA765294 [AGGACGAGACAAGGGGGGTCTTCCAGAGGAGGTTTTGGAGGGTGTAGCTGCTGGTATCGACCTCTTTGACTCTACGTACATTTACCAGCTTACTATGGGTGGTTTCGCACTGATCTTCCCCATTGACATGGTTGGAGAAAAGATGCAGAATGGTTCACTCAACAGTAGTGATGGAGATTTTACAAAGATTAATCTGCGTGCAACGACATATCGGAAAGACACGTCAAGGATAGTTGATAGCTGTAGCTGTTTCACATGCCAGAACCACACTCGTGCTTACCTTAATCATTTGCTCAATGTCCATGAGATGCTGGCTCAGATTCTACTGGAGATACACAATACACATCATTACCTTTGCTTTTTCCGGTTGATACGAGACACGATCAAAACCGGACAGTTTGATCGCTTTCGGCAGCAGTTTGTTCAGGACAGGCGTGCTTATCTTGCAGCTGCTGTGATCTAACAAGGATTAACTTCTCCCTAGATGTACACTGTTAGATCTCTTGAGGCTTTCATCAAACTAAATTGAGAAAGCTGCAAGTTAGATTCATTCAAATCCACAATCCCTCTCTTCGAAAATCCAAGTGACTGAACAACTTTTTGCAAATCCCTGGAAAGAAAGAAGAAATGAACAAATAGATAGTGCTAGATGGCTGAATTATTAACTTGCCTTTGGGATGAATTTTCAGAAATTTTTCG] consensusID : consensus_8108#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 322 fasta sequence [TGCCATGGACTGAAGGAGTAGAAAATTTCATCATTACCTTTGCTTTTTCCGGCTGATACGAGACACGATCAAAACCGGACAGTTTGATCGCTTTCGGCAGCAGTTTGTTCAGGACAGGCGTGCTTATCTTGCAGCTGCTGTGATCTAACAAGGATTAACTTCTCCCTAGATGTACACTGTTATACCTCTTGAGGCTTGCATCAAACTAAATTGAGAAAGCTGCAAGTTAGATTCATTCAAATCCACAATCCCTCTCTTCGAAAATCCAAGTGACTGAACAACTTTTTGCAAATCCCTGGAAAGAAAGAAGAAAGGAACAAAA] [+] EMBL CF309210 [TGCCATGGACTGAAGGAGTAGAAAATTTCATCATTACCTTTGCTTTTTCCGGCTGATACGAGACACGATCAAAACCGGACAGTTTGATCGCTTTCGGCAGCAGTTTGTTCAGGACAGGCGTGCTTATCTTGCAGCTGCTGTGATCTAACAAGGATTAACTTCTCCCTAGATGTACACTGTTATACCTCTTGAGGCTTGCATCAAACTAAATTGAGAAAGCTGCAAGTTAGATTCATTCAAATCCACAATCCCTCTCTTCGAAAATCCAAGTGACTGAACAACTTTTTGCAAATCCCTGGAAAGAAAGAAGAAAGGAACAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_8108#0 CGTCGCTGCTCTCCCCGACTCCCCGTCCTCCTTCCCTGCGACGACGGCGGCGGCGGCGGC 60 consensus_8108#1 ------------------------------------------------------------ consensus_8108#2 ------------------------------------------------------------ consensus_8108#0 GGTGGCGTGGCGGCTCTTTGTCAAGGTAATTTATCCTATTCGCAAAACTGGTACATCAGG 120 consensus_8108#1 ------------------------------------------------------------ consensus_8108#2 ------------------------------------------------------------ consensus_8108#0 AGAAATAACCAAGTGAACGTGATAGTAGTATACCACTGGTAGTGCACCACGGCAAAGCGA 180 consensus_8108#1 ------------------------------------------------------------ consensus_8108#2 ------------------------------------------------------------ consensus_8108#0 GGTGTCCTGATTCCTGAACAGCAGGATGCGGTTTGCGGTGACAAAAGTATGTGGTGGTGG 240 consensus_8108#1 ------------------------------------------------------------ consensus_8108#2 ------------------------------------------------------------ consensus_8108#0 GGCAAAGGCACGGGCAGGCATGCTCCAGATTGCTGGCAGTAACATTGAAACACCAGCGCT 300 consensus_8108#1 ------------------------------------------------------------ consensus_8108#2 ------------------------------------------------------------ consensus_8108#0 ACTTCTGTCCACACGCAAGGGGCTTCCAGCATTTGTGTCCCGTGATCTCCTTGCATCCCT 360 consensus_8108#1 ------------------------------------------------------------ consensus_8108#2 ------------------------------------------------------------ consensus_8108#0 CTCTCTCCCTGACTCTCTCCTTCTCCATGTGTGCCCTACCCATTTTATGGAAGGCCCTCC 420 consensus_8108#1 ------------------------------------------------------------ consensus_8108#2 ------------------------------------------------------------ consensus_8108#0 ATCAAAAACAATATCAAATATTAGTGGTTTGCATCATATGTTGGGTCTTCCTGATCATAT 480 consensus_8108#1 ------------------------------------------------------------ consensus_8108#2 ------------------------------------------------------------ consensus_8108#0 CCTCATAGCCGCAGCTGGTGATTCTATTGAGAGTTTACCAACAAGTGAAGCAAGCAATAA 540 consensus_8108#1 ------------------------------------------------------------ consensus_8108#2 ------------------------------------------------------------ consensus_8108#0 ATTTGGTGCTTCCTTTGAGACACCAGCTGGCCGAAGACTGGTTAAACCATCAGATTATAT 600 consensus_8108#1 ------------------------------------------------------------ consensus_8108#2 ------------------------------------------------------------ consensus_8108#0 GGAATTGATTTCCTGCATGAAGCCTAATTTGTGGGCAAGTTTGGCAGATGAGGTTCCAGC 660 consensus_8108#1 ------------------------------------------------------------ consensus_8108#2 ------------------------------------------------------------ consensus_8108#0 TTGGGTTACTGAGAAACGAAATAAAGTCTCTGTTGAGCGCACATTACGCTGGCTTGATGC 720 consensus_8108#1 ------------------------------------------------------------ consensus_8108#2 ------------------------------------------------------------ consensus_8108#0 ATGTATTGCTTTGGATGAGGATTCTGGTGCAAATACTTTAGGTGTAGTTGTGGGTGGATC 780 consensus_8108#1 ------------------------------------------------------------ consensus_8108#2 ------------------------------------------------------------ consensus_8108#0 TAGTATAGAACTACGGAAGCTATGTGCCACTGAAGTGTCAAAGAGGAATGTGTCAGGTTT 840 consensus_8108#1 ------------------------------------------------------------ consensus_8108#2 ------------------------------------------------------------ consensus_8108#0 TTGGATAGGAGGGTTGGGCTTTGGAGACAGTCCTGAAGAACGTTGCAGTATACTCGATGC 900 consensus_8108#1 ------------------------------------------------------------ consensus_8108#2 ------------------------------------------------------------ consensus_8108#0 TGCAGTGGGTTGCTTGCCTCCGGAGAAACCTCGAGTTGTCTCTAGGCTTGGTCTTCCAGA 960 consensus_8108#1 --------------------------------AGGACGAGACAAGGGG-GGTCTTCCAGA 27 consensus_8108#2 ------------------------------------------------------------ consensus_8108#0 GGAGGTTTTGGAGGGTGTAGCTGCTGGTATCGACCTCTTTGACTCTACGTACATTTACCA 1020 consensus_8108#1 GGAGGTTTTGGAGGGTGTAGCTGCTGGTATCGACCTCTTTGACTCTACGTACATTTACCA 87 consensus_8108#2 ------------------------------------------------------------ consensus_8108#0 GCTTACTATGGGTGGTTTCGCACTGATCTTCCCCATTGACATGGTTGGAGAAAAGATGCA 1080 consensus_8108#1 GCTTACTATGGGTGGTTTCGCACTGATCTTCCCCATTGACATGGTTGGAGAAAAGATGCA 147 consensus_8108#2 ------------------------------------------------------------ consensus_8108#0 GAATGGTTCACTCAACAGTAGTGATGGAGATTTTACAAAGATTAATCTGCGTGCAACGAC 1140 consensus_8108#1 GAATGGTTCACTCAACAGTAGTGATGGAGATTTTACAAAGATTAATCTGCGTGCAACGAC 207 consensus_8108#2 ------------------------------------------------------------ consensus_8108#0 ATATCGGAAAGACACGTCAAGGATAGTTGATAGCTGTAGCTGTTTCACATGCCAGAACCA 1200 consensus_8108#1 ATATCGGAAAGACACGTCAAGGATAGTTGATAGCTGTAGCTGTTTCACATGCCAGAACCA 267 consensus_8108#2 ------------------------------------------------------------ consensus_8108#0 CACTCGTGCTTACCTTAATCATTTGCTCAATGTCCATGAGATGCTGGCTCAGATTCTACT 1260 consensus_8108#1 CACTCGTGCTTACCTTAATCATTTGCTCAATGTCCATGAGATGCTGGCTCAGATTCTACT 327 consensus_8108#2 --------------------------------------------TGCCATGGACTGAA-- 14 ** * ** * * consensus_8108#0 GGAGATACACAATACACATCATTACCTTTGCTTTTTCCGGTTGATACGAGACACGATCAA 1320 consensus_8108#1 GGAGATACACAATACACATCATTACCTTTGCTTTTTCCGGTTGATACGAGACACGATCAA 387 consensus_8108#2 -GGAGTAGAAAAT-TTCATCATTACCTTTGCTTTTTCCGGCTGATACGAGACACGATCAA 72 * ** * *** ************************ ******************* consensus_8108#0 AACCGGACAGTTTGATCGCTTTCGGCAGCAGTTTGTTCAGGACAGGCGTGCTTATCTTGC 1380 consensus_8108#1 AACCGGACAGTTTGATCGCTTTCGGCAGCAGTTTGTTCAGGACAGGCGTGCTTATCTTGC 447 consensus_8108#2 AACCGGACAGTTTGATCGCTTTCGGCAGCAGTTTGTTCAGGACAGGCGTGCTTATCTTGC 132 ************************************************************ consensus_8108#0 AGCTGCTGTGATCTAACAAGGATTAACTTCTCCCTAGATGTACACTGTTAGACCTCTTGA 1440 consensus_8108#1 AGCTGCTGTGATCTAACAAGGATTAACTTCTCCCTAGATGTACACTGTTAGATCTCTTGA 507 consensus_8108#2 AGCTGCTGTGATCTAACAAGGATTAACTTCTCCCTAGATGTACACTGTTATACCTCTTGA 192 ************************************************** * ******* consensus_8108#0 GGCTTGCATCAAACTAAATTGAGAAAGCTGCAAGTTAGATTCATTCAAATCCACAATCCC 1500 consensus_8108#1 GGCTTTCATCAAACTAAATTGAGAAAGCTGCAAGTTAGATTCATTCAAATCCACAATCCC 567 consensus_8108#2 GGCTTGCATCAAACTAAATTGAGAAAGCTGCAAGTTAGATTCATTCAAATCCACAATCCC 252 ***** ****************************************************** consensus_8108#0 TCTCTTCGAAAATCCAAGTGACTGAACAACTTTTTGCAAATCCCTGGAAAGAAAGAAGAA 1560 consensus_8108#1 TCTCTTCGAAAATCCAAGTGACTGAACAACTTTTTGCAAATCCCTGGAAAGAAAGAAGAA 627 consensus_8108#2 TCTCTTCGAAAATCCAAGTGACTGAACAACTTTTTGCAAATCCCTGGAAAGAAAGAAGAA 312 ************************************************************ consensus_8108#0 AGGAACAAATAGATAGTGCTAGATGGCTGAATTATTAACTTGCCTTTGG-ATGAATTTTC 1619 consensus_8108#1 ATGAACAAATAGATAGTGCTAGATGGCTGAATTATTAACTTGCCTTTGGGATGAATTTTC 687 consensus_8108#2 AGGAACAAAA-------------------------------------------------- 322 * ******* consensus_8108#0 AGAAATTTTCGGGTTCATTAGTCAGTTTGTGTGCTAACTGTTCATGTTATTATAGCTG 1677 consensus_8108#1 AGAAATTTTTCG---------------------------------------------- 699 consensus_8108#2 ---------------------------------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||