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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8114#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 1442 fasta sequence
[CCTCCACCCGCCGCTTCGTCGCCCCTCGCCTCCGCTCCCTCCTCGCCGGGTTCGACAGCCTCCGCCGGCCGTACCGAGCCTTCCCCATTGTCGCGTCGAACCGGCACGTCGAGACCATCTTCGCCGCCTTCGCGCGGTCGCTCCCGGCCGTCGCGCTCCGCCGCGAGTGCCTCCGCACGCCCGACGATGGCGCCGTCGCGCTCGACTGGGTCTCCGGCGACGACCGTGCGCTTCCGCGGGACGCGCCGGTGCTCATACTCCTGCCTGGTCTAACAGGGGGAAGTGATGATACATATGTAAGGCATATGCTGTTAAGAGCTAGAAACAAAGGATGGCGCGTGGTGGTGTTTAACAGCCGTGGATGTGCAGGCAGTCCAGTGACTACAGCCAAGTTCTATTCGGCATCATTTACTGGAGATCTCCGGCAAGTAGTTGATCATGTTTTAGGACGTTTTCCTCAATCTAACGTTTATGCTGTTGGCTGGTCTCTTGGAGCAAACATTCTTGTGCGCTACCTTGGAGAGGAAACTGATAAATGTGTTCTTTCTGGAGCTGTGTCTTTGTGCAATCCATTCGATTTGGTAATTGCAGATGAAGATTTCCACAAAGGATTTAACAATGTCTATGACAGAGCCCTTGCTAAGGCTCTGAGGAATATATTTAAGAAGCATGCACTTCTTTTTGAAGGATTGGAAGGTGAATATAATATACCAAAGGCAGCGAATGCAAGATCAGTTAGAGACTTTGATGAAGGGCTAACCCGAGTTTCATTTGGCTTCAAGTCTGTGGATGATTATTACTCCAACTCAAGCAGCTCAGATTCCATAAAAAATGTTTCCATACCCTTATTGTGCATACAGGCGGATAATGACCCAATTGCACCATCTAGGGGAATTCCCAGAGAAGATATCAAGGCGAACCCGAACTGCCTACTGATAGTAACACCACAGGGTGGTCACCTTGGATGGGTGGCAGGTGAAGATGCTCCATTTGGATGCCCTTGGACTGACCCAATTATAATGGAGTTTTTAGAATATGTTCATAACGAAAAGAACTCTAGTACCAAGGGTAGCATCTCATATGAGCAGCAGAGTGTTACACAAACGTCAGCCCCAGATGTCTCCGTGCATGTGCAGCGATAGTAACGTTTCTCTTGCCAGATTTTTCCATTCACTAGGCATGTTTTGTGCACATAGTTGTTAGGTCGAGATGCTCTACAGTGCTCCAGGATGACAGGTTCTACGTTATTGAGTTGTGACGATATTGTCGCGGCCTGCAGTCTGGGATTCTTTACAGATTTATGGGCTTTGCCTGTTCAACTAATTTTAATATTTATTCCGTATTGACCATTGCCGATACGTGCTGTATAAAACAGGTATAAACCAGTATATCGATCGTGTTGTTAATATACATCCTACAACTATACGTCTATAAAAAAAAAG]
[+] EMBL CB641492 [CCTCCACCCGCCGCTTCGTCGCCCCTCGCCTCCGCTCCCTCCTCGCCGGGTTCGACAGCCTCCGCCGGCCGTACCGAGCCTTCCCCATTGTCGCGTCGAACCGGCACGTCGAGACCATCTTCGCCGCCTTCGCGCGGTCGCTCCCGGCCGTCGCGCTCCGCCGCGAGTGCCTCCGCACGCCCGACGATGGCGCCGTCGCGCTCGACTGGGTCTCCGGCGACGACCGTGCGCTTCCGCGGGACGCGCCGGTGCTCATACTCCTGCCTGGTCTAACAGGGGGAAGTGATGATACATATGTAAGGCATATGCTGTTAAGAGCTAGAAACAAAGGATGGCGCGTGGTGGTGTTTAACAGCCGTGGATGTGCAGGCAGTCCAGTGACTACAGCCAAGTTCTATTCGGCATCATTTACTGGAGATCTCCGGCAAGTAGTTGATCATGTTTTAGGACGTTTTCCTCAATCTAACGTTTATGCTGTTGGCTGGTCTCTTGGAGCAAACATTCTTGTGCGCTACCTTGGAGAGGAAACTGATAAATGTGTTCTTTCTGGAGCTGTGTCTTTGTGCAATCCATTCGATTTGGTAATTGCAGATGAAGATTTCCACAAAGGATTTAACAATGTCTATGACAGAGCCCTTGCTAAGGCTCTGAGGAATATATTTAAGAAGCATGCACTTCTTTTTGAAGGATTGGAAGGTGAATATAATATACCAAAGGCAGCGAATGCAAGATCAGTTAGAGACTTTGATGAAGGGCTAACCCGAGTTTCATTTGGCTTCAAGTCTGTGGATGATTATTACTCCNACTC ]
[-] EMBL CB641493 [ TTAAGAAGCATGCACTTCTTTTTGAAGGATTGGAAGGTGAATATAATATACCAAAGGCAGCGAATGCAAGATCAGTTAGAGACTTTGATGAAGGGCTAACCCGAGTTTCATTTGGCTTCAAGTCTGTGGATGATTATTACTCCAACTCAAGCAGCTCAGATTCCATAAAAAATGTTTCCATACCCTTATTGTGCATACAGGCGGATAATGACCCAATTGCACCATCTAGGGGAATTCCCAGAGAAGATATCAAGGCGAACCCGAACTGCCTACTGATAGTAACACCACAGGGTGGTCACCTTGGATGGGTGGCAGGTGAAGATGCTCCATTTGGATGCCCTTGGACTGACCCAATTATAATGGAGTTTTTAGAATATGTTCATAACGAAAAGAACTCTAGTACCAAGGGTAGCATCTCATATGAGCAGCAGAGTGTTACACAAACGTCAGCCCCAGATGTCTCCGTGCATGTGCAGCGATAGTAACGTTTCTCTTGCCAGATTTTTCCATTCACTAGGCATGTTTTGTGCACATAGTTGTTAGGTCGAGATGCTCTACAGTGCTCCAGGATGACAGGTTCTACGTTATTGAGTTGTGACGATATTGTCGCGGCCTGCAGTCTGGGATTCTTTACAGATTTATGGGCTTTGCCTGTTCAACTAATTTTAATATTTATTCCGTATTGACCATTGCCGATACGTGCTGTATAAAACAGGTATAAACCAGTATATCGATCGTGTTGTTAATATACATCCTACAACTATACGTCTATAAAAAAAAAG]
[-] EMBL AU174839 [ GACTTTGATGAAGGGCTAACCCGAGTTTCATTTGGCTTCAAGTCTGTGGATGATTATTACTCCAACTCAAGCAGCTCAGATTCCATAAAAAATGTTTCCATACCCTTATTGTGCATACAGGCGGATAATGACCCAATTGCACCATCTAGGGGAATTCCCAGAGAAGATATCAAGGCGAACCCGAACTGCCTACTGATAGTAACACCACAGGGTGGTCACCTTGGATGGGTGGCAGGTGAAGATGCTCCATTTGGATGCCCTTGGACTGACCCAATTATAATGGAGTTTTTAGAATATGTTCATAACGAAAAGAACTCTAGTACCAAGGGTAGCATCTCATATGAGCAGCAGAGTGTTACACAAACGTCAGCCCCAGATGTCTCCGTGCATGTGCAG ]
[-] EMBL AU174838 [ CGAACTGCCTACTGATAGTAACACCACAGGGTGGTCACCTTGGATGGGTGGCAGGTGAAGATGCTCCATTTGGATGCCCTTGGACTGACCCAATTATAATGGAGTTTTTAGAATATGTTCATAACGAAAAGAACTCTAGTACCAAGGGTAGCATCTCATATGAGCAGCAGAGTGTTACACAAACGTCAGCCCCAGATGTCTCCGTGCATGTGCAGCGATAGTAACGTTTCTCTTGCCAGATTTTTCCATTCACTAGGCATGTCTTGTGCACATAGTTGTTAGGTCGAGATGCTCTACAGTGCTCCAGGATGACAGGTTCTACGTTATTGAGTTGTGACGATATTGTCGCGGCCTGCAGTCTGGGATTCTTTACAGATTTATGGGCTTTGCCTGTTCAACTAATTTTAATATTTATTCCGTATTGACCATTGCCGATACGTGCTGTATAAAAC GGTATA ]
consensusID : consensus_8114#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 657 fasta sequence
[GATTATTACTCCAAGTCAAGCAGCTCAGATTCCATAAAAAATGTTTCCATACCCTTATAGTGCATACAGGCGGATAATGACCCAATTGCACCATCTAGGGGAATTCCCTGTGAAGATATCAAGGCGAACCCGAACTGCCTACTGATAGTAACACCACAGGGTGGTCCCCTTGGATGGGTGGCAGGTGAAGATGCTCCATTTGGATGCCCTTGGACTGACCCAATTATAATGGAGTTTGTAGAATATGTTCATAACGAAAAGAACTCTAGTACCAAGGGTAGCATCTCATATGAGCAGCAGAGTGTTACACAAACGTCAGCCCCAGATGTCTCTGTGCATGTGCAGCGATAGTAACGTTTCTCTTGCCAGATTTTTCCATTCTCTAGGCATGTCTTGTGCACATAGTTGTTAGGTCGAGATGCTTTTCAGTGCTCCAGGATGACAGGTACATGATCAAATTTCATGCACCCCTAGTTTTGTTCCTAAGTATAAATATTTTCTGTTCTTCCATCAATAGTTTGATGAATATTGTTCGCTATGCCTCTGCTTTACTTGTGCAGGTTGTACGTTATTGAGTTGTGACGATATTGTCGCGGCCTGCAGTCTGGGATTCTTTACAGATTTATGGGCTTTGCCTGTTCAACTAATTTTAATATT]
[-] EMBL CB624182 [GATTATTACTCCAAGTCAAGCAGCTCAGATTCCATAAAAAATGTTTCCATACCCTTATAGTGCATACAGGCGGATAATGACCCAATTGCACCATCTAGGGGAATTCCCTGTGAAGATATCAAGGCGAACCCGAACTGCCTACTGATAGTAACACCACAGGGTGGTCCCCTTGGATGGGTGGCAGGTGAAGATGCTCCATTTGGATGCCCTTGGACTGACCCAATTATAATGGAGTTTGTAGAATATGTTCATAACGAAAAGAACTCTAGTACCAAGGGTAGCATCTCATATGAGCAGCAGAGTGTTACACAAACGTCAGCCCCAGATGTCTCTGTGCATGTGCAGCGATAGTAACGTTTCTCTTGCCAGATTTTTCCATTCTCTAGGCATGTCTTGTGCACATAGTTGTTAGGTCGAGATGCTTTTCAGTGCTCCAGGATGACAGGTACATGATCAAATTTCATGCACCCCTAGTTTTGTTCCTAAGTATAAATATTTTCTGTTCTTCCATCAATAGTTTGATGAATATTGTTCGCTATGCCTCTGCTTTACTTGTGCAGGTTGTACGTTATTGAGTTGTGACGATATTGTCGCGGCCTGCAGTCTGGGATTCTTTACAGATTTATGGGCTTTGCCTGTTCAACTAATTTTAATATT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_8114#0 CCTCCACCCGCCGCTTCGTCGCCCCTCGCCTCCGCTCCCTCCTCGCCGGGTTCGACAGCC 60
consensus_8114#1 ------------------------------------------------------------
consensus_8114#0 TCCGCCGGCCGTACCGAGCCTTCCCCATTGTCGCGTCGAACCGGCACGTCGAGACCATCT 120
consensus_8114#1 ------------------------------------------------------------
consensus_8114#0 TCGCCGCCTTCGCGCGGTCGCTCCCGGCCGTCGCGCTCCGCCGCGAGTGCCTCCGCACGC 180
consensus_8114#1 ------------------------------------------------------------
consensus_8114#0 CCGACGATGGCGCCGTCGCGCTCGACTGGGTCTCCGGCGACGACCGTGCGCTTCCGCGGG 240
consensus_8114#1 ------------------------------------------------------------
consensus_8114#0 ACGCGCCGGTGCTCATACTCCTGCCTGGTCTAACAGGGGGAAGTGATGATACATATGTAA 300
consensus_8114#1 ------------------------------------------------------------
consensus_8114#0 GGCATATGCTGTTAAGAGCTAGAAACAAAGGATGGCGCGTGGTGGTGTTTAACAGCCGTG 360
consensus_8114#1 ------------------------------------------------------------
consensus_8114#0 GATGTGCAGGCAGTCCAGTGACTACAGCCAAGTTCTATTCGGCATCATTTACTGGAGATC 420
consensus_8114#1 ------------------------------------------------------------
consensus_8114#0 TCCGGCAAGTAGTTGATCATGTTTTAGGACGTTTTCCTCAATCTAACGTTTATGCTGTTG 480
consensus_8114#1 ------------------------------------------------------------
consensus_8114#0 GCTGGTCTCTTGGAGCAAACATTCTTGTGCGCTACCTTGGAGAGGAAACTGATAAATGTG 540
consensus_8114#1 ------------------------------------------------------------
consensus_8114#0 TTCTTTCTGGAGCTGTGTCTTTGTGCAATCCATTCGATTTGGTAATTGCAGATGAAGATT 600
consensus_8114#1 ------------------------------------------------------------
consensus_8114#0 TCCACAAAGGATTTAACAATGTCTATGACAGAGCCCTTGCTAAGGCTCTGAGGAATATAT 660
consensus_8114#1 ------------------------------------------------------------
consensus_8114#0 TTAAGAAGCATGCACTTCTTTTTGAAGGATTGGAAGGTGAATATAATATACCAAAGGCAG 720
consensus_8114#1 ------------------------------------------------------------
consensus_8114#0 CGAATGCAAGATCAGTTAGAGACTTTGATGAAGGGCTAACCCGAGTTTCATTTGGCTTCA 780
consensus_8114#1 ------------------------------------------------------------
consensus_8114#0 AGTCTGTGGATGATTATTACTCCAACTCAAGCAGCTCAGATTCCATAAAAAATGTTTCCA 840
consensus_8114#1 -----------GATTATTACTCCAAGTCAAGCAGCTCAGATTCCATAAAAAATGTTTCCA 49
************** **********************************
consensus_8114#0 TACCCTTATTGTGCATACAGGCGGATAATGACCCAATTGCACCATCTAGGGGAATTCCCA 900
consensus_8114#1 TACCCTTATAGTGCATACAGGCGGATAATGACCCAATTGCACCATCTAGGGGAATTCCCT 109
********* *************************************************
consensus_8114#0 GAGAAGATATCAAGGCGAACCCGAACTGCCTACTGATAGTAACACCACAGGGTGGTCACC 960
consensus_8114#1 GTGAAGATATCAAGGCGAACCCGAACTGCCTACTGATAGTAACACCACAGGGTGGTCCCC 169
* ******************************************************* **
consensus_8114#0 TTGGATGGGTGGCAGGTGAAGATGCTCCATTTGGATGCCCTTGGACTGACCCAATTATAA 1020
consensus_8114#1 TTGGATGGGTGGCAGGTGAAGATGCTCCATTTGGATGCCCTTGGACTGACCCAATTATAA 229
************************************************************
consensus_8114#0 TGGAGTTTTTAGAATATGTTCATAACGAAAAGAACTCTAGTACCAAGGGTAGCATCTCAT 1080
consensus_8114#1 TGGAGTTTGTAGAATATGTTCATAACGAAAAGAACTCTAGTACCAAGGGTAGCATCTCAT 289
******** ***************************************************
consensus_8114#0 ATGAGCAGCAGAGTGTTACACAAACGTCAGCCCCAGATGTCTCCGTGCATGTGCAGCGAT 1140
consensus_8114#1 ATGAGCAGCAGAGTGTTACACAAACGTCAGCCCCAGATGTCTCTGTGCATGTGCAGCGAT 349
******************************************* ****************
consensus_8114#0 AGTAACGTTTCTCTTGCCAGATTTTTCCATTCACTAGGCATGTTTTGTGCACATAGTTGT 1200
consensus_8114#1 AGTAACGTTTCTCTTGCCAGATTTTTCCATTCTCTAGGCATGTCTTGTGCACATAGTTGT 409
******************************** ********** ****************
consensus_8114#0 TAGGTCGAGATGCTCTACAGTGCTCCAGGATGACAGGTTCTACGTTA----TTGAGTTGT 1256
consensus_8114#1 TAGGTCGAGATGCTTTTCAGTGCTCCAGGATGACAGGTACATGATCAAATTTCATGCACC 469
************** * ********************* * * * * *
consensus_8114#0 GACGATATTGTCGCGGCCTGCAG---TCTGGGATTCTTT-----ACAGATTTATGGGCTT 1308
consensus_8114#1 CCTAGTTTTGTTCCTAAGTATAAATATTTTCTGTTCTTCCATCAATAGTTTGATGAATAT 529
* **** * * * * * ***** * ** ** *** *
consensus_8114#0 TGCCTGTTCAACTAATTTTAATATTTATTCCGTATTGACCATTGCCGATACGTGCTGTAT 1368
consensus_8114#1 TGTTCGCTATGCCTCTGCTT-TACTTGTGCAG-GTTGTACGTTATTGAGTTGTG----AC 583
** * * * * * ** ** * * * *** * ** ** *** *
consensus_8114#0 AAAACAGGTATAAACCAGTATATCGATCGTGTTGTTAATATACATCCTACAACTATACGT 1428
consensus_8114#1 GATATTGTCGCGGCCTGCAGTCTGGGATTCTTTACAGATTTATGGGCTTTGCCTGTTCAA 643
* * * * * * * ** ** ** ** ** * *
consensus_8114#0 CTATAAAAAAAAAG 1442
consensus_8114#1 CTAATTTTAATATT 657
*** ** *
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||