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Oryza sativa
cluster # 8119 cluster # 8119       Sequences # 5       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_8119#0 length = 1272 sequences # 4  
consensus_8119#1 length = 841 sequences # 1  

consensusID : consensus_8119#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 1272
fasta sequence
                              [TAAGCTCTCTGATGAGGAGAAAGTGAGCTTTGTGCTGGATTCCTTACTGGGAGGATATGAGACCACCTCACTCTTGATCTCCATGGTTGTGTATTTCCTTGGGCAGTCAGCTCAAGATCTGGAACTAGTGAAGAGGGAGCATGAAGGCATAAGATCGAAGAAAGAGAAGGACGAGTTCTTGAGCTCTGAAGACTATAAGAAGATGGAATATACCCAACATGTAAGATGATCGTTCAATACATGCTTTAGGATTAGTTAGTAAGCCAGGGGTACCTTTTTTTCCTATTATCAGCAACTACACAAATATGTGACCCTCCGAATATGAGGTTTACTCATATTCAGAACGATTCTCCTATGCCTACCCATATATGCAATTTTTGAATTAAGCAAAAAAAAGAAAAAGAAACAGAGAGAGAAAGAATCTCATTACAATAGAGTGAAAAGGGCGGAAGGGACATGTTCTTCAATAATGGAAACTGTATGATGATGCATATGCTATGCCCTTACAGGTTATCAATGAGGCACTGAGATGTGGCAACATTGTCAAGTTTGTCCACAGGAAGGCTCTCAGAGATGTCAGATACAAAGAGTATCTGATTCCTTCTGGTTGGAAGGTCCTACCTGTTTTCAGTGCTGTTCATTTGAACCCCTTACTTCATGGAAATGCCCAACAATTTCAGCCCTGCAGATGGGAGGGTGCAAGCCAAGGGACAAGCAAGAAGTTTACGCCGTTCGGCGGTGGCCCCCGGCTCTGCCCTGGATCAGAGCTTGCAAAAGTAGAGGCTGCTTTCTTCCTCCATCACCTTGTGCTCAATTATAGATGGAGAATCGATGGCGATGACATTCCGATGGCATACCCGTACGTGGAGTTCCAGAGAGGTCTGCCCATAGAAATCGAGCCACTTTGCTCTGAATCCTGACAGGTTTGCAGTTGCAGCCACGGTGAGCGAGTTCATCAAATCATCCCCGCAAGCGAGGGGGAGATGCGGGCGAGAACGACGGACTGAGAGGATTAGTCAGTGAAACAAAAAAAAGGAGAGAAAATATTTCAAGAACTGAAGAATGCACTGAGCATTAGCTAGTAGTACCTATCAATGAGCCAAGCTGAGATTGTAATTTGCTGTACATGGTGTAGATATATTTTGTCCATGCCGATTGCTTGCGGTGGTGGTGGTGCGGTGCTTCACCCTGTAACATCCTCCACTGTTTCAACTTTCATCTGCTATTCTATAGAAGAAAAAAAAAAGNANNAAATTGGGCTATTGGGCTNAA]

[+] EMBL AK101419             [TAAGCTCTCTGATGAGGAGAAAGTGAGCTTTGTGCTGGATTCCTTACTGGGAGGATATGAGACCACCTCACTCTTGATCTCCATGGTTGTGTATTTCCTTGGGCAGTCAGCTCAAGATCTGGAACTAGTGAAGAGGGAGCATGAAGGCATAAGATCGAAGAAAGAGAAGGACGAGTTCTTGAGCTCTGAAGACTATAAGAAGATGGAATATACCCAACATGTAAGATGATCGTTCAATACATGCTTTAGGATTAGTTAGTAAGCCAGGGGTACCTTTTTTTCCTATTATCAGCAACTACACAAATATGTGACCCTCCGAATATGAGGTTTACTCATATTCAGAACGATTCTCCTATGCCTACCCATATATGCAATTTTTGAATTAAGCAAAAAAAAGAAAAAGAAACAGAGAGAGAAAGAATCTCATTACAATAGAGTGAAAAGGGCGGAAGGGACATGTTCTTCAATAATGGAAACTGTATGATGATGCATATGCTATGCCCTTACAGGTTATCAATGAGGCACTGAGATGTGGCAACATTGTCAAGTTTGTCCACAGGAAGGCTCTCAGAGATGTCAGATACAAAGAGTATCTGATTCCTTCTGGTTGGAAGGTCCTACCTGTTTTCAGTGCTGTTCATTTGAACCCCTTACTTCATGGAAATGCCCAACAATTTCAGCCCTGCAGATGGGAGGGTGCAAGCCAAGGGACAAGCAAGAAGTTTACGCCGTTCGGCGGTGGCCCCCGGCTCTGCCCTGGATCAGAGCTTGCAAAAGTAGAGGCTGCTTTCTTCCTCCATCACCTTGTGCTCAATTATAGATGGAGAATCGATGGCGATGACATTCCGATGGCATACCCGTACGTGGAGTTCCAGAGAGGTCTGCCCATAGAAATCGAGCCACTTTGCTCTGAATCCTGACAGGTTTGCAGTTGCAGCCACGGTGAGCGAGTTCATCAAATCATCCCCGCAAGCGAGGGGGAGATGCGGGCGAGAACGACGGACTGAGAGGATTAGTCAGTGAAACAAAAAAAAGGAGAGAAAATATTTCAAGAACTGAAGAATGCACTGAGCATTAGCTAGTAGTACCTATCAATGAGCCAAGCTGAGATTGTAATTTGCTGTACATGGTGTAGATATATTTTGTCCATGCCGATTGCTTGCGGTGGTGGTGGTGCGGTGCTTCACCCTGTAACATCCTCCACTGTTTCAACTTTCATCTGCTATTCTATAGAAGAAAA                                ]
[+] EMBL OS0279A              [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 CAGATACAAAGAGTATCTGATTCCTTCTGGTTGGAAGGTCCTACCTGTTTTCAGTGCTGTTCATTTGAACCCCTTACTTCATGGAAATGCCCAACAATTTCAGCCCTGCAGATGGGAGGGTGCAAGCCAAGGGACAAGCAAGAAGTTTACGCCGTTCGG GGTGGCCCCCGGCTCTGCCCTGGATCAGAGCTTGCAAAAGTAGAGGCTGCTTTCTTCCTCCATCACCTTGTGCTCAATTATAGATGGAGAATCGATGGCGATGACATTCCGATGGCATACCCGTACGTGGAGTT                                                                                                                                                                                                                                                                                                                                                                                                                 ]
[-] EMBL CF278506             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      CCCCTTACTTCATGGAAATGCCCAACAATTTCAGCCCTGCAGATGGGAGGGTGCAAGCCAAGGGACAAGCAAGAAGTTTACGCCGTTCGGCGGTGGCCCCCGGCTCTGCCCTGGATCAGAGCTTGCAAAAGTAGAGGCTGCTTTCTTCCTCCATCACCTTGTGCTCAATTATAGATGGAGAATCGATGGCGATGACATTCCGATGGCATACCCGTACGTGGAGTTCCAGAGAGGTCTGCCCATAGAAATCGAGCCACTTTGCTCTGAATCCTGACAGGTTTGCAGTTGCAGCCACGGTGAGCGAGTTCATCAAATCATCCCCGCAAGCGAGGGGGAGATGCGGGCGAGAACGACGGACTGAGAGGATTAGTCAGTGAAACAAAAAA                                                                                                                                                                                                                                                ]
[+] EMBL OSC027915            [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      GATNCGGCCGAGACCGACGGACTGAGAGGATTAGTCAGTGAAACAAAAAAAAGGAGAGNAAATATTTCAAGAACTGAAGAATGCACTGAGCATTAGCTAGTAGTACCTATCAATGAGCCAAGCTGAGATTGTAATTTGCTGTACATGGTGTAGATATATTTTGTCCATGCCGATTGCTTGCGGTGGTGGTGGTGCGGTGCTTCACCCTGTAACATCCTCCACTGTTTCAACTTTCATCTGCTATTCTATAGAAGAAAAAAAAAAGNANNAAATTGGGCTATTGGGCTNAA]


>consensus_8119#0 TAAGCTCTCTGATGAGGAGAAAGTGAGCTTTGTGCTGGATTCCTTACTGGGAGGATATGA GACCACCTCACTCTTGATCTCCATGGTTGTGTATTTCCTTGGGCAGTCAGCTCAAGATCT GGAACTAGTGAAGAGGGAGCATGAAGGCATAAGATCGAAGAAAGAGAAGGACGAGTTCTT GAGCTCTGAAGACTATAAGAAGATGGAATATACCCAACATGTAAGATGATCGTTCAATAC ATGCTTTAGGATTAGTTAGTAAGCCAGGGGTACCTTTTTTTCCTATTATCAGCAACTACA CAAATATGTGACCCTCCGAATATGAGGTTTACTCATATTCAGAACGATTCTCCTATGCCT ACCCATATATGCAATTTTTGAATTAAGCAAAAAAAAGAAAAAGAAACAGAGAGAGAAAGA ATCTCATTACAATAGAGTGAAAAGGGCGGAAGGGACATGTTCTTCAATAATGGAAACTGT ATGATGATGCATATGCTATGCCCTTACAGGTTATCAATGAGGCACTGAGATGTGGCAACA TTGTCAAGTTTGTCCACAGGAAGGCTCTCAGAGATGTCAGATACAAAGAGTATCTGATTC CTTCTGGTTGGAAGGTCCTACCTGTTTTCAGTGCTGTTCATTTGAACCCCTTACTTCATG GAAATGCCCAACAATTTCAGCCCTGCAGATGGGAGGGTGCAAGCCAAGGGACAAGCAAGA AGTTTACGCCGTTCGGCGGTGGCCCCCGGCTCTGCCCTGGATCAGAGCTTGCAAAAGTAG AGGCTGCTTTCTTCCTCCATCACCTTGTGCTCAATTATAGATGGAGAATCGATGGCGATG ACATTCCGATGGCATACCCGTACGTGGAGTTCCAGAGAGGTCTGCCCATAGAAATCGAGC CACTTTGCTCTGAATCCTGACAGGTTTGCAGTTGCAGCCACGGTGAGCGAGTTCATCAAA TCATCCCCGCAAGCGAGGGGGAGATGCGGGCGAGAACGACGGACTGAGAGGATTAGTCAG TGAAACAAAAAAAAGGAGAGAAAATATTTCAAGAACTGAAGAATGCACTGAGCATTAGCT AGTAGTACCTATCAATGAGCCAAGCTGAGATTGTAATTTGCTGTACATGGTGTAGATATA TTTTGTCCATGCCGATTGCTTGCGGTGGTGGTGGTGCGGTGCTTCACCCTGTAACATCCT CCACTGTTTCAACTTTCATCTGCTATTCTATAGAAGAAAAAAAAAAGNANNAAATTGGGC TATTGGGCTNAA



consensusID : consensus_8119#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 841
fasta sequence
                              [GAGCTCTCTGATGAGGAGAAAGTGAGCTTTGTGCTGGATTCCTTACTGGGAGGATATGAGACCACCTCACTCTTGATCTCCATGGTTGTGTATTTCCTTGGGCAGTCAGCTCAAGATCTGGAACTAGTGAAGGTATACAGACTTCTCATGTGAATATCCATGCCAGAGAAAGGCTGATCATCGTTCTTCGTTTCTTTCGTTTCTTGAAAACCTGTGCAGATGGAGAATCGATGGCGATGACATTCCGATGGCATACCCGTACGTGGAGTTCCAGAGAGGTCTGCCCATAGAAATCGAGCCACTTTGCTCTGAATCCTATCAATGAGCCAAGCTGAGATTGTAATTTGCTGTACATGGTGTAGATATATTTTGTCCATGCCGATTGCTTGCGGTGGTGGTGGTGCGGTGCTTCACCCTGTAACATCCTCCACTGTTTCAACTTTCATCTGCTATTTCTGCACTACTTCTCAGGGAATTTCGGAGCAGACAAATTCGATCGTGGATAATCCCTATCAATCGGAGATGGCTGGTCCCGTTTGGATTGGAGGAATTTCTGAAGGAATCCTTTCATCGCTAGACGATTTCACGGGATAACAGTCCCCGAATCCACCACGCGTAACCTCGCCCAGGATCGAGGCCGAATTCCAGCCGAAGCCGCGCCGCGCCGTCGTCCCCGTATCCAATCCACCGCGGCGTCGACTCTCCCGCCGTTGCGCCCGGCCCAACGCCGGCGGCGGTCCCGCCTCTAGCGGCGCCCGCAGGATCATCTGCACACCCCCGCGCGACACCGCCGCCCGCCATGCCCGCCGCTCGAGCTCAACGTGAGAAGGGGAAGGGGAGA]

[-] EMBL AK068788             [GAGCTCTCTGATGAGGAGAAAGTGAGCTTTGTGCTGGATTCCTTACTGGGAGGATATGAGACCACCTCACTCTTGATCTCCATGGTTGTGTATTTCCTTGGGCAGTCAGCTCAAGATCTGGAACTAGTGAAGGTATACAGACTTCTCATGTGAATATCCATGCCAGAGAAAGGCTGATCATCGTTCTTCGTTTCTTTCGTTTCTTGAAAACCTGTGCAGATGGAGAATCGATGGCGATGACATTCCGATGGCATACCCGTACGTGGAGTTCCAGAGAGGTCTGCCCATAGAAATCGAGCCACTTTGCTCTGAATCCTATCAATGAGCCAAGCTGAGATTGTAATTTGCTGTACATGGTGTAGATATATTTTGTCCATGCCGATTGCTTGCGGTGGTGGTGGTGCGGTGCTTCACCCTGTAACATCCTCCACTGTTTCAACTTTCATCTGCTATTTCTGCACTACTTCTCAGGGAATTTCGGAGCAGACAAATTCGATCGTGGATAATCCCTATCAATCGGAGATGGCTGGTCCCGTTTGGATTGGAGGAATTTCTGAAGGAATCCTTTCATCGCTAGACGATTTCACGGGATAACAGTCCCCGAATCCACCACGCGTAACCTCGCCCAGGATCGAGGCCGAATTCCAGCCGAAGCCGCGCCGCGCCGTCGTCCCCGTATCCAATCCACCGCGGCGTCGACTCTCCCGCCGTTGCGCCCGGCCCAACGCCGGCGGCGGTCCCGCCTCTAGCGGCGCCCGCAGGATCATCTGCACACCCCCGCGCGACACCGCCGCCCGCCATGCCCGCCGCTCGAGCTCAACGTGAGAAGGGGAAGGGGAGA]


>consensus_8119#1 GAGCTCTCTGATGAGGAGAAAGTGAGCTTTGTGCTGGATTCCTTACTGGGAGGATATGAG ACCACCTCACTCTTGATCTCCATGGTTGTGTATTTCCTTGGGCAGTCAGCTCAAGATCTG GAACTAGTGAAGGTATACAGACTTCTCATGTGAATATCCATGCCAGAGAAAGGCTGATCA TCGTTCTTCGTTTCTTTCGTTTCTTGAAAACCTGTGCAGATGGAGAATCGATGGCGATGA CATTCCGATGGCATACCCGTACGTGGAGTTCCAGAGAGGTCTGCCCATAGAAATCGAGCC ACTTTGCTCTGAATCCTATCAATGAGCCAAGCTGAGATTGTAATTTGCTGTACATGGTGT AGATATATTTTGTCCATGCCGATTGCTTGCGGTGGTGGTGGTGCGGTGCTTCACCCTGTA ACATCCTCCACTGTTTCAACTTTCATCTGCTATTTCTGCACTACTTCTCAGGGAATTTCG GAGCAGACAAATTCGATCGTGGATAATCCCTATCAATCGGAGATGGCTGGTCCCGTTTGG ATTGGAGGAATTTCTGAAGGAATCCTTTCATCGCTAGACGATTTCACGGGATAACAGTCC CCGAATCCACCACGCGTAACCTCGCCCAGGATCGAGGCCGAATTCCAGCCGAAGCCGCGC CGCGCCGTCGTCCCCGTATCCAATCCACCGCGGCGTCGACTCTCCCGCCGTTGCGCCCGG CCCAACGCCGGCGGCGGTCCCGCCTCTAGCGGCGCCCGCAGGATCATCTGCACACCCCCG CGCGACACCGCCGCCCGCCATGCCCGCCGCTCGAGCTCAACGTGAGAAGGGGAAGGGGAG A



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_8119#0      TAAGCTCTCTGATGAGGAGAAAGTGAGCTTTGTGCTGGATTCCTTACTGGGAGGATATGA 60
consensus_8119#1      -GAGCTCTCTGATGAGGAGAAAGTGAGCTTTGTGCTGGATTCCTTACTGGGAGGATATGA 59
                        **********************************************************

consensus_8119#0      GACCACCTCACTCTTGATCTCCATGGTTGTGTATTTCCTTGGGCAGTCAGCTCAAGATCT 120
consensus_8119#1      GACCACCTCACTCTTGATCTCCATGGTTGTGTATTTCCTTGGGCAGTCAGCTCAAGATCT 119
                      ************************************************************

consensus_8119#0      GGAACTAGTGAAGAGGGAGCATGAAGGCATAAGATCGAAGAAAGAGAAGGACGAGTTCTT 180
consensus_8119#1      GGAACTAGTGAAG-----GTATACAGACTTCTCATGTGAATA-------------TCCAT 161
                      *************     * **  ** * *   **   *  *             * * *

consensus_8119#0      GAGCTCTGAAGACTATAAGAAGATGGAATAT-ACCCAACATGTAAGATGATCGTTCAATA 239
consensus_8119#1      G-----------CCAGAGAAAGGCTGATCATCGTTCTTCGTTTCTTTCGTTTCTTGAAAA 210
                      *           * * *  ***   **  **    *  * * *     * *  ** ** *

consensus_8119#0      CATGCTTTAGGATTAGTTAGTAAGCCAGGGGTACCTTTTTTTCCTATTATCAGCAACTAC 299
consensus_8119#1      CCTGTGC-------AGATGGAGAATCGATGGCGA-TGACATTCCGATGGC--------AT 254
                      * **          ** * *  *  *   **    *    **** **           * 

consensus_8119#0      ACAAATATGTGACCCTCCGAATATGAGGTTTACTCATATTCAGAACGATTCTCCTATGCC 359
consensus_8119#1      ACCCGTACGTGGAGTTCCAGA---GAGGTCTGCCCATA--GAAATCGAGCCACTT-TGCT 308
                      **   ** ***    ***  *   ***** * * ****   * * ***  * * * *** 

consensus_8119#0      TACCCATATATGCAATTTTTGAATTAAGCAAAAAAAAGAAAAAGAAACAGAGAGAGAAAG 419
consensus_8119#1      C-----TGAATCCTATCAATGAGCCAAGCTGAGATTGTAATTTGCTGTACATGGTGTAGA 363
                            *  ** * **   ***   ****  * *    **   *    * *  * * *  

consensus_8119#0      AATCTCATTACAATA--GAGTGAAAAGGGCGGAAGGGACATGTTCTTCAATAATGGAA-- 475
consensus_8119#1      TATATTTTGTCCATGCCGATTGCTTGCGGTGGTGGTGGTGCGGTGCTTCACCCTGTAACA 423
                       ** *  *  * **   ** **     ** **  * *    * *  *  *   ** **  

consensus_8119#0      ------ACTGTATGATGATGCATATGCTATGCCCTTACAGGTTATCAATGAGGCACTGAG 529
consensus_8119#1      TCCTCCACTGTTTCAACTTTCATCTGCTATTTCTGCACTACTTCTCAG---------GGA 474
                            ***** * *   * *** ******  *   **   ** ***          *  

consensus_8119#0      ATGTGGCAACATTGTCAAGTTTGTCCACAGGAAGGCTCTCAGAGATGTCAGATACAAAGA 589
consensus_8119#1      ATTTCGGAGCA--GACAAATTCGATCGTGGATAATCCCT-------ATCA---ATCGGAG 522
                      ** * * * **  * *** ** *  *   *  *  * **        ***   *      

consensus_8119#0      GTATCTGATTCCTTCTGGTTGGAAGGTCCTACCTGTTTTCAGTGCTGTTCATTTGAACCC 649
consensus_8119#1      ATGGCTGGTCCCGTTTGGATTGGAGGAATT-----TCTGAAGGAATCCTTTCATCGCTAG 577
                       *  *** * ** * *** * * ***   *     * *  **   *  *    *      

consensus_8119#0      CTTACTTCATGGAAATGCCCAACAATTTCAGCCCTGCAGATGGGAGGGTGCAAGCCAAGG 709
consensus_8119#1      ACGATTTCACGGGA-----TAACAGTCCCCGAATCCACCACGCGTAACCTC--GCCCAGG 630
                         * **** ** *      **** *  * *        * * *      *  *** ***

consensus_8119#0      GACAAGCAAGAAGTTTACGCCGTTCGGCGGTGGCCCCCGGCTCTGCCCTGGATCAGAGCT 769
consensus_8119#1      ATCGAGGCCGAATTCCA-GCCGA--AGCCGCGCCGCGCCG-TCGTCCCCGTATCCAATCC 686
                        * **   *** *  * ****    ** * * * * * * **  *** * ***  * * 

consensus_8119#0      TGCAAAAGTAGAGGCTGCTTTCTTCCTCCATCACCTTGTGCTCAATTATAGATGGAGAAT 829
consensus_8119#1      ----ACCGCGGCGTCGACT--CTCCCGCCGTTGCGCCCGGCCCAACGCCGGCGGCGGTCC 740
                          *  *  * * *  **  ** ** ** *  *     ** ***     *  *  *   

consensus_8119#0      CGATGGCGATGACATTCCGATGGCATACCCGTACGTGGAGTTCCAGAGAGGTCTGCCCAT 889
consensus_8119#1      CGCCTCTAGCGGCGC-CCGCAGGATCATCTGCACACC---CCCGCGCGACACCGCCGCCC 796
                      **        * *   ***  **   * * * **        *  * **   *  * *  

consensus_8119#0      AGAAATCGAGCCACTTTGCTCTGAATCCTGACAGGTTTGCAGTTGCAGCCACGGTGAGCG 949
consensus_8119#1      GCCATGCCCGCCGCTCGAGCTCAACGTGAGAAGGGGAAGGGGAGA--------------- 841
                         *  *  *** **        *     **  **   *  *                  

consensus_8119#0      AGTTCATCAAATCATCCCCGCAAGCGAGGGGGAGATGCGGGCGAGAACGACGGACTGAGA 1009
consensus_8119#1      ------------------------------------------------------------
                                                                                  

consensus_8119#0      GGATTAGTCAGTGAAACAAAAAAAAGGAGAGAAAATATTTCAAGAACTGAAGAATGCACT 1069
consensus_8119#1      ------------------------------------------------------------
                                                                                  

consensus_8119#0      GAGCATTAGCTAGTAGTACCTATCAATGAGCCAAGCTGAGATTGTAATTTGCTGTACATG 1129
consensus_8119#1      ------------------------------------------------------------
                                                                                  

consensus_8119#0      GTGTAGATATATTTTGTCCATGCCGATTGCTTGCGGTGGTGGTGGTGCGGTGCTTCACCC 1189
consensus_8119#1      ------------------------------------------------------------
                                                                                  

consensus_8119#0      TGTAACATCCTCCACTGTTTCAACTTTCATCTGCTATTCTATAGAAGAAAAAAAAAAGNA 1249
consensus_8119#1      ------------------------------------------------------------
                                                                                  

consensus_8119#0      NNAAATTGGGCTATTGGGCTNAA 1272
consensus_8119#1      -----------------------
                                             




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)