These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8119#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 1272 fasta sequence [TAAGCTCTCTGATGAGGAGAAAGTGAGCTTTGTGCTGGATTCCTTACTGGGAGGATATGAGACCACCTCACTCTTGATCTCCATGGTTGTGTATTTCCTTGGGCAGTCAGCTCAAGATCTGGAACTAGTGAAGAGGGAGCATGAAGGCATAAGATCGAAGAAAGAGAAGGACGAGTTCTTGAGCTCTGAAGACTATAAGAAGATGGAATATACCCAACATGTAAGATGATCGTTCAATACATGCTTTAGGATTAGTTAGTAAGCCAGGGGTACCTTTTTTTCCTATTATCAGCAACTACACAAATATGTGACCCTCCGAATATGAGGTTTACTCATATTCAGAACGATTCTCCTATGCCTACCCATATATGCAATTTTTGAATTAAGCAAAAAAAAGAAAAAGAAACAGAGAGAGAAAGAATCTCATTACAATAGAGTGAAAAGGGCGGAAGGGACATGTTCTTCAATAATGGAAACTGTATGATGATGCATATGCTATGCCCTTACAGGTTATCAATGAGGCACTGAGATGTGGCAACATTGTCAAGTTTGTCCACAGGAAGGCTCTCAGAGATGTCAGATACAAAGAGTATCTGATTCCTTCTGGTTGGAAGGTCCTACCTGTTTTCAGTGCTGTTCATTTGAACCCCTTACTTCATGGAAATGCCCAACAATTTCAGCCCTGCAGATGGGAGGGTGCAAGCCAAGGGACAAGCAAGAAGTTTACGCCGTTCGGCGGTGGCCCCCGGCTCTGCCCTGGATCAGAGCTTGCAAAAGTAGAGGCTGCTTTCTTCCTCCATCACCTTGTGCTCAATTATAGATGGAGAATCGATGGCGATGACATTCCGATGGCATACCCGTACGTGGAGTTCCAGAGAGGTCTGCCCATAGAAATCGAGCCACTTTGCTCTGAATCCTGACAGGTTTGCAGTTGCAGCCACGGTGAGCGAGTTCATCAAATCATCCCCGCAAGCGAGGGGGAGATGCGGGCGAGAACGACGGACTGAGAGGATTAGTCAGTGAAACAAAAAAAAGGAGAGAAAATATTTCAAGAACTGAAGAATGCACTGAGCATTAGCTAGTAGTACCTATCAATGAGCCAAGCTGAGATTGTAATTTGCTGTACATGGTGTAGATATATTTTGTCCATGCCGATTGCTTGCGGTGGTGGTGGTGCGGTGCTTCACCCTGTAACATCCTCCACTGTTTCAACTTTCATCTGCTATTCTATAGAAGAAAAAAAAAAGNANNAAATTGGGCTATTGGGCTNAA] [+] EMBL AK101419 [TAAGCTCTCTGATGAGGAGAAAGTGAGCTTTGTGCTGGATTCCTTACTGGGAGGATATGAGACCACCTCACTCTTGATCTCCATGGTTGTGTATTTCCTTGGGCAGTCAGCTCAAGATCTGGAACTAGTGAAGAGGGAGCATGAAGGCATAAGATCGAAGAAAGAGAAGGACGAGTTCTTGAGCTCTGAAGACTATAAGAAGATGGAATATACCCAACATGTAAGATGATCGTTCAATACATGCTTTAGGATTAGTTAGTAAGCCAGGGGTACCTTTTTTTCCTATTATCAGCAACTACACAAATATGTGACCCTCCGAATATGAGGTTTACTCATATTCAGAACGATTCTCCTATGCCTACCCATATATGCAATTTTTGAATTAAGCAAAAAAAAGAAAAAGAAACAGAGAGAGAAAGAATCTCATTACAATAGAGTGAAAAGGGCGGAAGGGACATGTTCTTCAATAATGGAAACTGTATGATGATGCATATGCTATGCCCTTACAGGTTATCAATGAGGCACTGAGATGTGGCAACATTGTCAAGTTTGTCCACAGGAAGGCTCTCAGAGATGTCAGATACAAAGAGTATCTGATTCCTTCTGGTTGGAAGGTCCTACCTGTTTTCAGTGCTGTTCATTTGAACCCCTTACTTCATGGAAATGCCCAACAATTTCAGCCCTGCAGATGGGAGGGTGCAAGCCAAGGGACAAGCAAGAAGTTTACGCCGTTCGGCGGTGGCCCCCGGCTCTGCCCTGGATCAGAGCTTGCAAAAGTAGAGGCTGCTTTCTTCCTCCATCACCTTGTGCTCAATTATAGATGGAGAATCGATGGCGATGACATTCCGATGGCATACCCGTACGTGGAGTTCCAGAGAGGTCTGCCCATAGAAATCGAGCCACTTTGCTCTGAATCCTGACAGGTTTGCAGTTGCAGCCACGGTGAGCGAGTTCATCAAATCATCCCCGCAAGCGAGGGGGAGATGCGGGCGAGAACGACGGACTGAGAGGATTAGTCAGTGAAACAAAAAAAAGGAGAGAAAATATTTCAAGAACTGAAGAATGCACTGAGCATTAGCTAGTAGTACCTATCAATGAGCCAAGCTGAGATTGTAATTTGCTGTACATGGTGTAGATATATTTTGTCCATGCCGATTGCTTGCGGTGGTGGTGGTGCGGTGCTTCACCCTGTAACATCCTCCACTGTTTCAACTTTCATCTGCTATTCTATAGAAGAAAA ] [+] EMBL OS0279A [ CAGATACAAAGAGTATCTGATTCCTTCTGGTTGGAAGGTCCTACCTGTTTTCAGTGCTGTTCATTTGAACCCCTTACTTCATGGAAATGCCCAACAATTTCAGCCCTGCAGATGGGAGGGTGCAAGCCAAGGGACAAGCAAGAAGTTTACGCCGTTCGG GGTGGCCCCCGGCTCTGCCCTGGATCAGAGCTTGCAAAAGTAGAGGCTGCTTTCTTCCTCCATCACCTTGTGCTCAATTATAGATGGAGAATCGATGGCGATGACATTCCGATGGCATACCCGTACGTGGAGTT ] [-] EMBL CF278506 [ CCCCTTACTTCATGGAAATGCCCAACAATTTCAGCCCTGCAGATGGGAGGGTGCAAGCCAAGGGACAAGCAAGAAGTTTACGCCGTTCGGCGGTGGCCCCCGGCTCTGCCCTGGATCAGAGCTTGCAAAAGTAGAGGCTGCTTTCTTCCTCCATCACCTTGTGCTCAATTATAGATGGAGAATCGATGGCGATGACATTCCGATGGCATACCCGTACGTGGAGTTCCAGAGAGGTCTGCCCATAGAAATCGAGCCACTTTGCTCTGAATCCTGACAGGTTTGCAGTTGCAGCCACGGTGAGCGAGTTCATCAAATCATCCCCGCAAGCGAGGGGGAGATGCGGGCGAGAACGACGGACTGAGAGGATTAGTCAGTGAAACAAAAAA ] [+] EMBL OSC027915 [ GATNCGGCCGAGACCGACGGACTGAGAGGATTAGTCAGTGAAACAAAAAAAAGGAGAGNAAATATTTCAAGAACTGAAGAATGCACTGAGCATTAGCTAGTAGTACCTATCAATGAGCCAAGCTGAGATTGTAATTTGCTGTACATGGTGTAGATATATTTTGTCCATGCCGATTGCTTGCGGTGGTGGTGGTGCGGTGCTTCACCCTGTAACATCCTCCACTGTTTCAACTTTCATCTGCTATTCTATAGAAGAAAAAAAAAAGNANNAAATTGGGCTATTGGGCTNAA] consensusID : consensus_8119#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 841 fasta sequence [GAGCTCTCTGATGAGGAGAAAGTGAGCTTTGTGCTGGATTCCTTACTGGGAGGATATGAGACCACCTCACTCTTGATCTCCATGGTTGTGTATTTCCTTGGGCAGTCAGCTCAAGATCTGGAACTAGTGAAGGTATACAGACTTCTCATGTGAATATCCATGCCAGAGAAAGGCTGATCATCGTTCTTCGTTTCTTTCGTTTCTTGAAAACCTGTGCAGATGGAGAATCGATGGCGATGACATTCCGATGGCATACCCGTACGTGGAGTTCCAGAGAGGTCTGCCCATAGAAATCGAGCCACTTTGCTCTGAATCCTATCAATGAGCCAAGCTGAGATTGTAATTTGCTGTACATGGTGTAGATATATTTTGTCCATGCCGATTGCTTGCGGTGGTGGTGGTGCGGTGCTTCACCCTGTAACATCCTCCACTGTTTCAACTTTCATCTGCTATTTCTGCACTACTTCTCAGGGAATTTCGGAGCAGACAAATTCGATCGTGGATAATCCCTATCAATCGGAGATGGCTGGTCCCGTTTGGATTGGAGGAATTTCTGAAGGAATCCTTTCATCGCTAGACGATTTCACGGGATAACAGTCCCCGAATCCACCACGCGTAACCTCGCCCAGGATCGAGGCCGAATTCCAGCCGAAGCCGCGCCGCGCCGTCGTCCCCGTATCCAATCCACCGCGGCGTCGACTCTCCCGCCGTTGCGCCCGGCCCAACGCCGGCGGCGGTCCCGCCTCTAGCGGCGCCCGCAGGATCATCTGCACACCCCCGCGCGACACCGCCGCCCGCCATGCCCGCCGCTCGAGCTCAACGTGAGAAGGGGAAGGGGAGA] [-] EMBL AK068788 [GAGCTCTCTGATGAGGAGAAAGTGAGCTTTGTGCTGGATTCCTTACTGGGAGGATATGAGACCACCTCACTCTTGATCTCCATGGTTGTGTATTTCCTTGGGCAGTCAGCTCAAGATCTGGAACTAGTGAAGGTATACAGACTTCTCATGTGAATATCCATGCCAGAGAAAGGCTGATCATCGTTCTTCGTTTCTTTCGTTTCTTGAAAACCTGTGCAGATGGAGAATCGATGGCGATGACATTCCGATGGCATACCCGTACGTGGAGTTCCAGAGAGGTCTGCCCATAGAAATCGAGCCACTTTGCTCTGAATCCTATCAATGAGCCAAGCTGAGATTGTAATTTGCTGTACATGGTGTAGATATATTTTGTCCATGCCGATTGCTTGCGGTGGTGGTGGTGCGGTGCTTCACCCTGTAACATCCTCCACTGTTTCAACTTTCATCTGCTATTTCTGCACTACTTCTCAGGGAATTTCGGAGCAGACAAATTCGATCGTGGATAATCCCTATCAATCGGAGATGGCTGGTCCCGTTTGGATTGGAGGAATTTCTGAAGGAATCCTTTCATCGCTAGACGATTTCACGGGATAACAGTCCCCGAATCCACCACGCGTAACCTCGCCCAGGATCGAGGCCGAATTCCAGCCGAAGCCGCGCCGCGCCGTCGTCCCCGTATCCAATCCACCGCGGCGTCGACTCTCCCGCCGTTGCGCCCGGCCCAACGCCGGCGGCGGTCCCGCCTCTAGCGGCGCCCGCAGGATCATCTGCACACCCCCGCGCGACACCGCCGCCCGCCATGCCCGCCGCTCGAGCTCAACGTGAGAAGGGGAAGGGGAGA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_8119#0 TAAGCTCTCTGATGAGGAGAAAGTGAGCTTTGTGCTGGATTCCTTACTGGGAGGATATGA 60 consensus_8119#1 -GAGCTCTCTGATGAGGAGAAAGTGAGCTTTGTGCTGGATTCCTTACTGGGAGGATATGA 59 ********************************************************** consensus_8119#0 GACCACCTCACTCTTGATCTCCATGGTTGTGTATTTCCTTGGGCAGTCAGCTCAAGATCT 120 consensus_8119#1 GACCACCTCACTCTTGATCTCCATGGTTGTGTATTTCCTTGGGCAGTCAGCTCAAGATCT 119 ************************************************************ consensus_8119#0 GGAACTAGTGAAGAGGGAGCATGAAGGCATAAGATCGAAGAAAGAGAAGGACGAGTTCTT 180 consensus_8119#1 GGAACTAGTGAAG-----GTATACAGACTTCTCATGTGAATA-------------TCCAT 161 ************* * ** ** * * ** * * * * * consensus_8119#0 GAGCTCTGAAGACTATAAGAAGATGGAATAT-ACCCAACATGTAAGATGATCGTTCAATA 239 consensus_8119#1 G-----------CCAGAGAAAGGCTGATCATCGTTCTTCGTTTCTTTCGTTTCTTGAAAA 210 * * * * *** ** ** * * * * * * ** ** * consensus_8119#0 CATGCTTTAGGATTAGTTAGTAAGCCAGGGGTACCTTTTTTTCCTATTATCAGCAACTAC 299 consensus_8119#1 CCTGTGC-------AGATGGAGAATCGATGGCGA-TGACATTCCGATGGC--------AT 254 * ** ** * * * * ** * **** ** * consensus_8119#0 ACAAATATGTGACCCTCCGAATATGAGGTTTACTCATATTCAGAACGATTCTCCTATGCC 359 consensus_8119#1 ACCCGTACGTGGAGTTCCAGA---GAGGTCTGCCCATA--GAAATCGAGCCACTT-TGCT 308 ** ** *** *** * ***** * * **** * * *** * * * *** consensus_8119#0 TACCCATATATGCAATTTTTGAATTAAGCAAAAAAAAGAAAAAGAAACAGAGAGAGAAAG 419 consensus_8119#1 C-----TGAATCCTATCAATGAGCCAAGCTGAGATTGTAATTTGCTGTACATGGTGTAGA 363 * ** * ** *** **** * * ** * * * * * * consensus_8119#0 AATCTCATTACAATA--GAGTGAAAAGGGCGGAAGGGACATGTTCTTCAATAATGGAA-- 475 consensus_8119#1 TATATTTTGTCCATGCCGATTGCTTGCGGTGGTGGTGGTGCGGTGCTTCACCCTGTAACA 423 ** * * * ** ** ** ** ** * * * * * * ** ** consensus_8119#0 ------ACTGTATGATGATGCATATGCTATGCCCTTACAGGTTATCAATGAGGCACTGAG 529 consensus_8119#1 TCCTCCACTGTTTCAACTTTCATCTGCTATTTCTGCACTACTTCTCAG---------GGA 474 ***** * * * *** ****** * ** ** *** * consensus_8119#0 ATGTGGCAACATTGTCAAGTTTGTCCACAGGAAGGCTCTCAGAGATGTCAGATACAAAGA 589 consensus_8119#1 ATTTCGGAGCA--GACAAATTCGATCGTGGATAATCCCT-------ATCA---ATCGGAG 522 ** * * * ** * *** ** * * * * * ** *** * consensus_8119#0 GTATCTGATTCCTTCTGGTTGGAAGGTCCTACCTGTTTTCAGTGCTGTTCATTTGAACCC 649 consensus_8119#1 ATGGCTGGTCCCGTTTGGATTGGAGGAATT-----TCTGAAGGAATCCTTTCATCGCTAG 577 * *** * ** * *** * * *** * * * ** * * * consensus_8119#0 CTTACTTCATGGAAATGCCCAACAATTTCAGCCCTGCAGATGGGAGGGTGCAAGCCAAGG 709 consensus_8119#1 ACGATTTCACGGGA-----TAACAGTCCCCGAATCCACCACGCGTAACCTC--GCCCAGG 630 * **** ** * **** * * * * * * * *** *** consensus_8119#0 GACAAGCAAGAAGTTTACGCCGTTCGGCGGTGGCCCCCGGCTCTGCCCTGGATCAGAGCT 769 consensus_8119#1 ATCGAGGCCGAATTCCA-GCCGA--AGCCGCGCCGCGCCG-TCGTCCCCGTATCCAATCC 686 * ** *** * * **** ** * * * * * * ** *** * *** * * consensus_8119#0 TGCAAAAGTAGAGGCTGCTTTCTTCCTCCATCACCTTGTGCTCAATTATAGATGGAGAAT 829 consensus_8119#1 ----ACCGCGGCGTCGACT--CTCCCGCCGTTGCGCCCGGCCCAACGCCGGCGGCGGTCC 740 * * * * * ** ** ** ** * * ** *** * * * consensus_8119#0 CGATGGCGATGACATTCCGATGGCATACCCGTACGTGGAGTTCCAGAGAGGTCTGCCCAT 889 consensus_8119#1 CGCCTCTAGCGGCGC-CCGCAGGATCATCTGCACACC---CCCGCGCGACACCGCCGCCC 796 ** * * *** ** * * * ** * * ** * * * consensus_8119#0 AGAAATCGAGCCACTTTGCTCTGAATCCTGACAGGTTTGCAGTTGCAGCCACGGTGAGCG 949 consensus_8119#1 GCCATGCCCGCCGCTCGAGCTCAACGTGAGAAGGGGAAGGGGAGA--------------- 841 * * *** ** * ** ** * * consensus_8119#0 AGTTCATCAAATCATCCCCGCAAGCGAGGGGGAGATGCGGGCGAGAACGACGGACTGAGA 1009 consensus_8119#1 ------------------------------------------------------------ consensus_8119#0 GGATTAGTCAGTGAAACAAAAAAAAGGAGAGAAAATATTTCAAGAACTGAAGAATGCACT 1069 consensus_8119#1 ------------------------------------------------------------ consensus_8119#0 GAGCATTAGCTAGTAGTACCTATCAATGAGCCAAGCTGAGATTGTAATTTGCTGTACATG 1129 consensus_8119#1 ------------------------------------------------------------ consensus_8119#0 GTGTAGATATATTTTGTCCATGCCGATTGCTTGCGGTGGTGGTGGTGCGGTGCTTCACCC 1189 consensus_8119#1 ------------------------------------------------------------ consensus_8119#0 TGTAACATCCTCCACTGTTTCAACTTTCATCTGCTATTCTATAGAAGAAAAAAAAAAGNA 1249 consensus_8119#1 ------------------------------------------------------------ consensus_8119#0 NNAAATTGGGCTATTGGGCTNAA 1272 consensus_8119#1 ----------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||