These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8121#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 194 fasta sequence [TTTCCCAAGCAATGAGATCAAAGACTCAAAGCTACCAAGACGGCGCCGACGACTGGTGTCATCTAAGGACT-CAGAGTCGACAGCCCGCCTTCAGGAGAGCAGTTTTTGGGTTATAACCTTATGCCACCAACTCAGGACTGGCCAAGCATAGAATACCGCATAGTTCCAGGATGATAGCCCAAAACCCCGAGAAC] [+] EMBL D42265 [TTTCCCAAGCAATGAGATCAAAGACTCAAAGCTACCAAGACGGCGCCGACGACTGGTGTCATCTAAGGACT CAGAGTCGACAGCCCGCCTTCAGGAGAGCAGTTTTTGGGTTATAACCTTATGCCACCAACTCAGGACTGGCCAAGCATAGAATACCGCATAGTTCCAGGAT ] [+] EMBL D42280 [ TGAGATCAAAGACTCAAAGCTACCAAGACGGCCCCGA GACTGGTGTCATCTAAGGACTCCAGAGTCGACAGCCCGCCTCCAGGAGAGCAGTTTTTGGGTTATAA CTTATCCCACCAACTCAGGACTGGCCAAGCATAGAATCCCGCATAGTTCCAGGATGATAGCCCAAAACCCCGAGAAC] consensusID : consensus_8121#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 186 fasta sequence [CCCCAAGCAATGAGATCAAAGACTCAAAGCTACCAAGACGGCACGAGCACTGGTGTCATCTAAGGACTCCAGACTCGACAGCCCGCCTCCAGAGAGCAGTTTTTGGTTTATAACTTTATGCAACCAACTCAGGACTGGCAAGCATAGAATCCCGCATAAGTTCCAGGATGATAGCCCAAAGCCCGA] [+] EMBL D42187 [CCCCAAGCAATGAGATCAAAGACTCAAAGCTACCAAGACGGCACGAGCACTGGTGTCATCTAAGGACTCCAGACTCGACAGCCCGCCTCCAGAGAGCAGTTTTTGGTTTATAACTTTATGCAACCAACTCAGGACTGGCAAGCATAGAATCCCGCATAAGTTCCAGGATGATAGCCCAAAGCCCGA] consensusID : consensus_8121#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 175 fasta sequence [TTCCCCAAGCAATGAGATCAAAGACTCAAAGCTACCAAGACGGCCCGAGCACTGGTGTCATCTAAGGACTCCAGAGTGACAGCCGCTCAGGAGAGCAGTTTTTGGGTTATAACTTTATCGAACCACTCAGGACTGGCAGATAGATCGCCGATAGAATCCGCGATAGTTCCAGGAT] [+] EMBL D42208 [TTCCCCAAGCAATGAGATCAAAGACTCAAAGCTACCAAGACGGCCCGAGCACTGGTGTCATCTAAGGACTCCAGAGTGACAGCCGCTCAGGAGAGCAGTTTTTGGGTTATAACTTTATCGAACCACTCAGGACTGGCAGATAGATCGCCGATAGAATCCGCGATAGTTCCAGGAT] consensusID : consensus_8121#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 160 fasta sequence [CCAAGCAATGAGATCAAAGACTCAAAGCTACCAAGACGAGCACGAGCACTGGTGTCATCTAAGGACTCCAGAGTCGACAGCCCGCCTCCAAGGAGAGCAGTTTTTGGGTTATAACCTTATCGAACAACTAGGACTGGCAAGACAGAACCCGAAGCCAAGG] [+] EMBL D42190 [CCAAGCAATGAGATCAAAGACTCAAAGCTACCAAGACGAGCACGAGCACTGGTGTCATCTAAGGACTCCAGAGTCGACAGCCCGCCTCCAAGGAGAGCAGTTTTTGGGTTATAACCTTATCGAACAACTAGGACTGGCAAGACAGAACCCGAAGCCAAGG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_8121#2 TTCCCCAAGCAATGAGATCAAAGACTCAAAGCTACCAAGACG-GCCCGAGCACTGGTGTC 59 consensus_8121#3 ----CCAAGCAATGAGATCAAAGACTCAAAGCTACCAAGACGAGCACGAGCACTGGTGTC 56 consensus_8121#0 TTTCCCAAGCAATGAGATCAAAGACTCAAAGCTACCAAGACGGCGCCGACGACTGGTGTC 60 consensus_8121#1 --CCCCAAGCAATGAGATCAAAGACTCAAAGCTACCAAGACGGCAC-GAGCACTGGTGTC 57 ************************************** ** ********* consensus_8121#2 ATCTAAGGACTCCAGAGT-GACAGC----CGCTCAGGAGAGCAGTTTTTGGGTTATAACT 114 consensus_8121#3 ATCTAAGGACTCCAGAGTCGACAGCCCGCCTCCAAGGAGAGCAGTTTTTGGGTTATAACC 116 consensus_8121#0 ATCTAAGGACTC-AGAGTCGACAGCCCG-CCTTCAGGAGAGCAGTTTTTGGGTTATAACC 118 consensus_8121#1 ATCTAAGGACTCCAGACTCGACAGCCCG-CCTCCAG-AGAGCAGTTTTTGGTTTATAACT 115 ************ *** * ****** * ** ************** ******* consensus_8121#2 TTAT-CGAACCACTCAGGACTGGC--A-GATAGATCGCCG-ATAGAATCCGCGATAGTTC 169 consensus_8121#3 TTAT-CGAACAACT-AGGACTGGC--AAGACAGAACCC------GAAGCCAAGG------ 160 consensus_8121#0 TTATGCCACCAACTCAGGACTGGCCAAGCATAGAATACCGCATA-GTTCCAGGATGATAG 177 consensus_8121#1 TTATGCAACCAACTCAGGACTGGC-AAGCATAGAATCCCGCATAAGTTCCAGGATGATAG 174 **** * * * *** ********* * * *** * ** * consensus_8121#2 CAGGAT----------- 175 consensus_8121#3 ----------------- consensus_8121#0 CCCAAAACCCCGAGAAC 194 consensus_8121#1 CCCAAAGCCCGA----- 186 |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||