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Oryza sativa
cluster # 8122 cluster # 8122       Sequences # 5       consensus # 1


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_8122#0 length = 902 sequences # 5  

consensusID : consensus_8122#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 5
consensus length = 902
fasta sequence
                              [CGCGCGCGCGCCGCCGCCGCCGCATCGACCGACGGGAGAGTCAAGCAGGAGGAGGAGGGAAGGAGGGAGAGGATGGTGAAGGGGAGGCCGAAGCCCACACCGGTGAACGCGCCGGCGGAGGTCGTCTTCGACCCGTCCGCGCCCGGTGCCCGGAGGCCCCGCCGCCCTGGGGCGCCTTCGTCGTCGTCGTCGACTGGCGAGTGGCACAACTTCATGGGATCGAGTCTTTCGGATATGTATCGGAAGCCAGCTGCGGAAAAATCTGATGATACTTCTGATGATGATGAGGAGCCTGACATTGATATTGGGAAGTTGTTGAAAGATGTA-GAGCTTTTCGGTGCATCTACATGGAAGGAACGGAAGCAATTAGAGAACCGTAAAGTAGTTCAGTTGGGTGGAAAGGCCATTAAGAAGCACCGAACGCCGTTAAGTGTATCAAAGCCAGCTATGAAGAACCAAAAGAAAAGAGAAGAGAAGAAAGCGGAAGAGGAAAGACTACTTGGAATATTTAGGAAACGGGATTCCAAGAACAGCAAAGCTCAAAAGACTAGACCTGAGGACCGAGTACTTAGGGCTACCCAAGGGCACTTCAAGAATGGTATACTTGATGTCAAGCATCTTTTGGCACCACCCAAACCATCGGGTCGGGATGCGCCTGAGCAGAAAATGAGAATGGGCAAGAAAAATGGCAAGGGAAAGCAGAAGGGAGGCAGAAGGAAGAGACGTTAGATAAAACACCCTATTAGCTTTTGTATTAAGATGGACTCATCGTCTACTTGTATCTTTCAGTGTAAAGATCGAAAACATTTTGCAGAGGCATGTTTTGTTTCAGTGTCTTATGAGGCTCAGCCTCCGGTTCGATTTGCATGTAGTCTGGCCTCTGCAAAGAAAGCCATTTTGGG]

[+] EMBL C73243               [CGCGCGCGCGCCGCCGCCGCCGCATCGACCGACGGNAGAGTCAAGCAGGAGGAGGAGGGAAGGAGGGAGAGGATGGTGAAGGGGAGGCCGAAGCCCACACCGGTNAACGCGCCGGCGGAGGTCGTCTTCNACCCGTCCGCNCCCGGTGCCCGGAGGCCCCGCCGCCCTGGGGCGCCTTCNTCGTCGTCGTCGACTGGCGAGTGGCACAACTTCATGGNATCNANTCTTTCGGATATGTATCGGAAGCCAGCTGCGGAAAANTCTAATGATACTTCTAATGATGATGAGGAGCCTGACATTGATATTGGGAAGTTGTTGAAAGATGTAGGAGCTTTTCGGTGCATCTACATGGAAGGA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  ]
[+] EMBL AU082954             [ GCGCGCGCGCCGCCGCCGCCGCATCGACCGACGGGAGAGTCAAGCAGGAGGAGGAGGGAAGGAGGGAGAGGATGGTGAAGGGGAGGCCGAAGCCCACACCGGTGAACGCGCCGGCGNAGGTCGTCTTCGACCCGTCCGCGCCCGGTGCCCGNAGGCCCCGCCGCCCTGGGGCGCCTTCGTCGTCGTCGTCGACTGGCGAGTGGCACAACTTCATGGGATCGAGTCTTTCGGATATGTATCGGAAGCCAGCTGCGGAAAAATCTGATGATACTTCTGATGATGATGAGGAGCCTGACATTGATATTGGGAAGTTGTTGAAAGATGTA GAGCTTTTCGGTGCATCTACATGGAAGGAACGGAAGCAATTAGAGAACCGTAAAGTAGTTCAGTTGGGTGGAAAGGCCATTAAGAAGCACCGAACGCCGTTAAGTGTATCAAAGCCAGCTATGAAGAACCAAAAAAAAAAAAAAAAAAAaa                                                                                                                                                                                                                                                                                                                                                                                                                                        ]
[+] EMBL AK109225             [              CGCCGCCGCATCGACCGACGGGAGAGTCAAGCAGGAGGAGGAGGGAAGGAGGGAGAGGATGGTGAAGGGGAGGCCGAAGCCCACACCGGTGAACGCGCCGGCGGAGGTCGTCTTCGACCCGTCCGCGCCCGGTGCCCGGAGGCCCCGCCGCCCTGGGGCGCCTTCGTCGTCGTCGTCGACTGGCGAGTGGCACAACTTCATGGGATCGAGTCTTTCGGATATGTATCGGAAGCCAGCTGCGGAAAAATCTGATGATACTTCTGATGATGATGAGGAGCCTGACATTGATATTGGGAAGTTGTTGAAAGATGTA GAGCTTTTCGGTGCATCTACATGGAAGGAACGGAAGCAATTAGAGAACCGTAAAGTAGTTCAGTTGGGTGGAAAGGCCATTAAGAAGCACCGAACGCCGTTAAGTGTATCAAAGCCAGCTATGAAGAACCAAAAGAAAAGAGAAGAGAAGAAAGCGGAAGAGGAAAGACTACTTGGAATATTTAGGAAACGGGATTCCAAGAACAGCAAAGCTCAAAAGACTAGACCTGAGGACCGAGTACTTAGGGCTACCCAAGGGCACTTCAAGAATGGTATACTTGATGTCAAGCATCTTTTGGCACCACCCAAACTATCGGGTCGGGATGCGCCTGAGCAGAAAATGAGAATGGGCAAGAAAAATGGCAAGGGAAAGCAGAAGGGAGGCAGAAGGAAGAGACGTTAGATAAAACACCCTATTAGCTTTTGTATTAAGATGGACTCATCATCTACTTGTATCTTTCAGTGTAAAGATCGAAAACATTTTGCAGAGGCATGTTTTGT                                                                           ]
[+] EMBL CB630889             [                           ACCGACGGGAGAGTCAAGCAGGAGGAGGAGGGAAGGAGGGAGAGGATGGTGAAGGGGAGGCCGAAGCCCACACCGGTGAACGCGCCGGCGGAGGTCGTCTTCGACCCGTCCGCGCCCGGTGCCCGGAGGCCCCGCCGCCCTGGGGCGCCTTCGTCGTCGTCGTCGACTGGCGAGTGGCACAACTTCATGGGATCGAGTCTTTCGGATATGTATCGGAAGCCAGCTGCGGAAAAATCTGATAATACTTCTGATGATGATGAGGAACCTGACATTGATATTGGGAAGTTGTTGAAAGATGTA GAGCTTTTCGGTGCATCTACATGGAAGGAACGGAAGCAATTAGAGAACCGTAAAGTAGTTCAGTTGGGTGGAAAGGCCATTAAGAAGCACCGAACGCCGTTAAGTGTATCAAAGCCAGCTATGAAGAACCAAAAGAAAAGAGAAGAGAAGAAAGCGGAAGAGGAAAGACTACTTGGAATATTTAGGAAACGGGATTCCAAGAACAGCAAAGCTCAAAAGACTAGACCTGAGGACCGAGTACTTAGGGCTACCCAAGGGCACTTCAAGAATGGTATACTTGATGTCAAGCATCTTTTGGCACCACCCAAACCATCGGGTCGGGATGCGCCTGAGCAGAAAATGAGAATGGGCAAGAAAAATGGCAAGGGAAAGCAGAAGGGAGGCAGAAGGAAGAGACGTTAGATAAAACACCCTATTAGCTTTTGTATTAAGATGGACTCATCGTCTACTTGTATCTTTCAGTGTAAAGATCGAANACATTTTGCAGAGGCATGTTTTGTTTC                                                                        ]
[-] EMBL CB630890             [                                                                                                                           GTCTTCGACCCGTCCGCGCCCGGTGCCCGGAGGCCCCGCCGCCCTGGGGCGCCTTCGTCGTCGTCGTCGACTGGCGAGTGGCACAACTTCATGGGATCGAGTCTTTCGGATATGTATCGGAAGCCAGCTGCGGAAAAATCTGATAATACTTCTGATGATGATGAGGAACCTGACATTGATATTGGGAAGTTGTTGAAAGATGTA GAGCTTTTCGGTGCATCTACATGGAAGGAACGGAAGCAATTAGAGAACCGTAAAGTAGTTCAGTTGGGTGGAAAGGCCATTAAGAAGCACCGAACGCCGTTAAGTGTATCAAAGCCAGCTATGAAGAACCAAAAGAAAAGAGAAGAGAAGAAAGCGGAAGAGGAAAGACTACTTGGAATATTTAGGAAACGGGATTCCAAGAACAGCAAAGCTCAAAAGACTAGACCTGAGGACCGAGTACTTAGGGCTACCCAAGGGCACTTCAAGAATGGTATACTTGATGTCAAGCATCTTTTGGCACCACCCAAACCATCGGGTCGGGATGCGCCTGAGCAGAAAATGAGAATGGGCAAGAAAAATGGCAAGGGAAAGCAGAAGGGAGGCAGAAGGAAGAGACGTTAGATAAAACACCCTATTAGCTTTTGTATTAAGATGGACTCATCGTCTACTTGTATCTTTCAGTGTAAAGATCGAAAACATTTTGCAGAGGCATGTTTTGTTTCAGTGTCTTATGAGGCTCAGCCTCCGGTTCGATTTGCATGTAGTCTGGCCTCTGCAAAGAAAGCCATTTTGGG]


>consensus_8122#0 CGCGCGCGCGCCGCCGCCGCCGCATCGACCGACGGGAGAGTCAAGCAGGAGGAGGAGGGA AGGAGGGAGAGGATGGTGAAGGGGAGGCCGAAGCCCACACCGGTGAACGCGCCGGCGGAG GTCGTCTTCGACCCGTCCGCGCCCGGTGCCCGGAGGCCCCGCCGCCCTGGGGCGCCTTCG TCGTCGTCGTCGACTGGCGAGTGGCACAACTTCATGGGATCGAGTCTTTCGGATATGTAT CGGAAGCCAGCTGCGGAAAAATCTGATGATACTTCTGATGATGATGAGGAGCCTGACATT GATATTGGGAAGTTGTTGAAAGATGTAGAGCTTTTCGGTGCATCTACATGGAAGGAACGG AAGCAATTAGAGAACCGTAAAGTAGTTCAGTTGGGTGGAAAGGCCATTAAGAAGCACCGA ACGCCGTTAAGTGTATCAAAGCCAGCTATGAAGAACCAAAAGAAAAGAGAAGAGAAGAAA GCGGAAGAGGAAAGACTACTTGGAATATTTAGGAAACGGGATTCCAAGAACAGCAAAGCT CAAAAGACTAGACCTGAGGACCGAGTACTTAGGGCTACCCAAGGGCACTTCAAGAATGGT ATACTTGATGTCAAGCATCTTTTGGCACCACCCAAACCATCGGGTCGGGATGCGCCTGAG CAGAAAATGAGAATGGGCAAGAAAAATGGCAAGGGAAAGCAGAAGGGAGGCAGAAGGAAG AGACGTTAGATAAAACACCCTATTAGCTTTTGTATTAAGATGGACTCATCGTCTACTTGT ATCTTTCAGTGTAAAGATCGAAAACATTTTGCAGAGGCATGTTTTGTTTCAGTGTCTTAT GAGGCTCAGCCTCCGGTTCGATTTGCATGTAGTCTGGCCTCTGCAAAGAAAGCCATTTTG GG



clustalw multiple alignements is not computed in this case


Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)