|
These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8123#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1003 fasta sequence
[GGTGACTTCTATGCCCTCAGAGTACCTAAGGCAAGGGGAAGCTGAGATGATAGTTCCTTTATGGCTCAACGTACTTCATGATGCAGCCTCAGACTATCTTCACAGTAGGACTGGTGATAATGTCAGAAACAACCATGCTTACATGCAAGGGAAAGGCGGAAGAACCCTTAAGCGTATAGTCAGGGACTTTGCAGAAAGCCATCGGAATGCCCCCATGCCCTGCCCTTCGTAACGTGTTTGATGAAACTACCTCGTGCGGATGGAACTGCCGCGATTAATAGTGTTGATTTTGGAGCTGTCAATGATCCCGGAGAGCTCACTGCTCACATGAGGATCTAAAGAGAGACCGTGTGGAGCTTCTGTCTGGCGTTACGGGTATGTCACAATGCTGATCCCAAAGGCTTGATCTCCACATATTCCATCCGTTATCTTTTAGCGGGATTAGGAGGTCGTTTGGTGCCTATTATGCAAAAGACCTGGCTGCAAGGGACAAGGTCACTCTGCAGACTAGTGGCTGCTCTGAGATTTGAGTGGGTCAGGATCCTTGAGGCCAATGACCGTTCCTCAAGTTGGAGTTTGCTATGCTATACTCTTGGAAACACATGGTTTAGCTGTCGCATACTCCACATCTTCTGTTTTTTGGGAAGCTGGGAACGAAGAGGTCAGAGGTGAATTTTATAGCTCTCTACACCCTCTTTTCACAACCCGTGCGATGTACAAAACATTCATCTGTATTCTGTCTCAAATTTTGAGTTCATTACCTAAGTTATATGTGGGCATGTCCGCATGTGATCAAAGCCATCAGCATGTCAAGTGAAATTTTGAGGGGGAAGATTTTGAGAAATGTATATATAATTGCTAGCTCATGAATCTCCCCTTTAAAACTGAATGGGGTTTAAAAGACTTGTATAGATATTTATGTGGCCTCATTCGGATCAGATCTTGCATGCGATTTTCATGTTAAGTGAGAAATGTGTAGTTAGTGTTGACAACCAACCTTAAA]
[+] EMBL CB621071 [GGTGACTTCTATGCCCTCAGAGTACCTAAGGCAAGGGGAAGCTGAGATGATAGTTCCTTTATGGCTCAACGTACTTCATGATGCAGCCTCAGACTATCTTCACAGTAGGACTGGTGATAATGTCAGAAACAACCATGCTTACATGCAAGGGAAAGGCGGAAGAACCCTTAAGCGTATAGTCAGGGACTTTGCAGAAAGCCATCGGAATGCCCCCATGCCCTGCCCTTCGTAACGTGTTTGATGAAACTACCTCGTGCGGATGGAACTGCCGCGATTAATAGTGTTGATTTTGGAGCTGTCAATGATCCCGGAGAGCTCACTGCTCACATGAGGATCTAAAGAGAGACCGTGTGGAGCTTCTGTCTGGCGTTACGGGTATGTCACAATGCTGATCCCAAAGGCTTGATCTCCACATATTCCATCCGTTATCTTTTAGCGGGATTAGGAGGTCGTTTGGTGCCTATTATGCAAAAGACCTGGCTGCAAGGGACAAGGTCACTCTGCAGACTAGTGGCTGCTCTGAGATTTGAGTGGGTCAGGATCCTTGAGGCCAATGACCGTTCCTCAAGTTGGAGTTTGCTATGCTATACTCTTGGAAACACATGGTTTAGCTGTCGCATACTCCACATCTTCTGTTTTTTGGGAAGCTGGGAACGAAGAGGTCAGAGGTGAATTTTATAGCTCTCTACACCCTCTTTTCACAACCCGTGCGATGTACAAGACATTCATCTGTATTCTGTCTCAAATTTTGAGTTCATTACCTAAGTTATATGTGGGCATGTCC ]
[-] EMBL CB627612 [ CCTCAGACT TCTTCACAGTAGGACTGGTGATAATGTCAGAAACAACCATGCTTACATGCAAGGGAAAGGCGGAAGAACCCTTAAGCGTATAGTCAGGGACTTTGCAGAAAGCCATCGGAATGCCCCCATGCCCTGCCCTTCGTAACGTGTTTGATGAAACTACCTCATGCGGATGGAACTGCCGCGATTAATAGTGTTGATTTTGGAGCTGTCAATGATCCCGGAGAGCTCACTGCTCACATGAGGATCTAAAGAGAGACCGTGTGGAGCTTCTGTCTGGCGTTACGGGTATGTCACAATGCTGATCCCAAAGGCTTGATCTCCACATATTCCATCCGTTATCTTTTAGCGGGATTAGGAGGTCGTTTGGTGCCTATTATGCAAAAGACCTGGCTGCAAGGGACAAGGTCACTCTGCAGACTAGTGGCTGCTCTGAGATTTGAGTGGGTCAGGATCCTTGAGGCCAATGACCGTTCCTCAAGTTGGAGTTTGCTATGCTATACTCTTGGAAACACATGGTTTAGCTGTCGCATACTCCACATCTTCTGTTTTTTGGGAAGCTGGGAACGAAGAGGTCAGAGGTGAATTTTATAGCTCTCTACACCCTCTTTTCACAACCCGTGCGATGTACAAAACATTCATCTGTATTCTGTCTCAAATTTTGAGTTCATTACCTAAGTTATATGTGGGCATGTCCGCATGTGATCAAAGCCATCAGCATGTCAAGTGAAATTTTGAGGGGGAAGATTTTGAGAAATGTATATATAATTGCTAGCTCATGAATCTCCCCTTTAAAACTGAATGGGGTTTAAAAGACT ]
[-] EMBL CB621072 [ TTGATTTTGGAGCTGTCAATGATCCCGGAGAGCTCACTGCTCACATGAGGATCTAAAGAGAGACCGTGTGGAGCTTCTGTCTGGCGTTACGGGTATGTCACAATGCTGATCCCAAAGGCTTGATCTCCACATATTCCATCCGTTATCTTTTAGCGGGATTAGGAGGTCGTTTGGTGCCTATTATGCAAAAGACCTGGCTGCAAGGGACAAGGTCACTCTGCAGACTAGTGGCTGCTCTGAGATTTGAGTGGGTCAGGATCCTTGAGGCCAATGACCGTTCCTCAAGTTGGAGTTTGCTATGCTATACTCTTGGAAACACATGGTTTAGCTGTCGCATACTCCACATCTTCTGTTTTTTGGGAAGCTGGGAACGAAGAGGTCAGAGGTGAATTTTATAGCTCTCTACACCCTCTTTTCACAACCCGTGCGATGTACAAAACATTCATCTGTATTCTGTCTCAAATTTTGAGTTCATTACCTAAGTTATATGTGGGCATGTCCGCATGTGATCAAAGCCATCAGCATGTCAAGTGAAATTTTGAGGGGGAAGATTTTGAGAAATGTATATATAATTGCTAGCTCATGAATCTCCCCTTTAAAACTAAATGGGGTTTAAAAGACTTGTATAGATATTTATGTGGCCTCATTCGGATCAGATCTTGCATGCGATTTTCATGTTAAGTGAGAAATGTGTAGTTAGTGTTGACAACCAACCTTAAA]
consensusID : consensus_8123#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 953 fasta sequence
[AATCTATGCCCTCAGAGTACCTAAGGCAAGGGGAAGCTGAGATGATAGTTCCTTTATGGCTCAGCGTACTTCATGATGCAGCCTCAGACTATCTTCACAGTAGGACTGGTGATAATGTCAGAAACAACCATGCTTACATGCAAGGGAAAGGCGGAAGAACCCTTAAGCGTATTGCCAGGGACTTTGCAGAAAGCCATCGGAATGCCCCCATGCCCTGCCCTTCATAACGTGTTTGATGAAACTACCTCATGCGGATGGAACTGCCGCGATTAATAGTGTTGATTTTGGAGCTGTCAATGATCCCGGAGAGCTCACTGCTCACATGAGGATCTAAAGAGAGACCGTGTGGAGCTTCTGTCTGGCGTTACGGGTATATCACAATGCTGATACCAAAGGTTTGATCTCCACATATTCCATCCGTTATCTTTTAGCGGGATTAGGAGGTCGTTTGGTGCCTATTATGCAAAAGACCTGGTTTGGAGTCTGTTTCTCCTTTTGCATAGCGGCTGCAAGGGACAAGGTCACTCTGCAGACTAGTAGCTGCTCAGATTTGAGTGGGTCAGTATCCTCGAGGCCAATGACCGTTCTTCAAGTTGGAGTTTGCTATGCTATACTCTTGGAAACACATGGTTTAGCTGTGGCATACTCCAACATCTTCTGGTTTTTTGGGAAGCTGGGAACGAAGAGGTCAGAGGTGAATTTTATAGCTCTCTACACCCTCTTTTCACAACCCGTGCGATGTACAAAACATTCATCTGTATTCTGTCTCAAATTTTGAGTTCATTACCTAAGTTATATGTGGGCATGTCCGCATGTGATCAAAGCCATCAGCATGTCAAGTGAAATTTTGAGGGGTAAGATTTTGAGAAATGTATATATAATTGCTAGCTCATGAATCTCCCCTTTAAAACTAAATGGGGTTTGAAAGACTCATATAGATATTTATGTGGCCT]
[+] EMBL AK058944 [AATCTATGCCCTCAGAGTACCTAAGGCAAGGGGAAGCTGAGATGATAGTTCCTTTATGGCTCAGCGTACTTCATGATGCAGCCTCAGACTATCTTCACAGTAGGACTGGTGATAATGTCAGAAACAACCATGCTTACATGCAAGGGAAAGGCGGAAGAACCCTTAAGCGTATTGCCAGGGACTTTGCAGAAAGCCATCGGAATGCCCCCATGCCCTGCCCTTCATAACGTGTTTGATGAAACTACCTCATGCGGATGGAACTGCCGCGATTAATAGTGTTGATTTTGGAGCTGTCAATGATCCCGGAGAGCTCACTGCTCACATGAGGATCTAAAGAGAGACCGTGTGGAGCTTCTGTCTGGCGTTACGGGTATATCACAATGCTGATACCAAAGGTTTGATCTCCACATATTCCATCCGTTATCTTTTAGCGGGATTAGGAGGTCGTTTGGTGCCTATTATGCAAAAGACCTGGTTTGGAGTCTGTTTCTCCTTTTGCATAGCGGCTGCAAGGGACAAGGTCACTCTGCAGACTAGTAGCTGCTCAGATTTGAGTGGGTCAGTATCCTCGAGGCCAATGACCGTTCTTCAAGTTGGAGTTTGCTATGCTATACTCTTGGAAACACATGGTTTAGCTGTGGCATACTCCAACATCTTCTGGTTTTTTGGGAAGCTGGGAACGAAGAGGTCAGAGGTGAATTTTATAGCTCTCTACACCCTCTTTTCACAACCCGTGCGATGTACAAAACATTCATCTGTATTCTGTCTCAAATTTTGAGTTCATTACCTAAGTTATATGTGGGCATGTCCGCATGTGATCAAAGCCATCAGCATGTCAAGTGAAATTTTGAGGGGTAAGATTTTGAGAAATGTATATATAATTGCTAGCTCATGAATCTCCCCTTTAAAACTAAATGGGGTTTGAAAGACTCATATAGATATTTATGTGGCCT]
[+] EMBL OSR3341A [ CCTCAGAGTACCTAAGGCAAGGGGAAGCTGAGATGATAGTTCCTTTATGGCTCAGCGTACTTCATGATGCAGCCTCAGACTATCTTCACAGTAGGACTGGTGATAATGTCAGAAACAACCATGCTTACATGCAAGGGAAAGGCGGAAGAACCCTTAAGCGTATTGTCAGGGACTTTGCAGAAAGCCATCGGAATGCCCCCATGCCCTGCCCTTCATAACGTGTTTGATGAAACTACCTCATGCGGATGGAACTGCCGCGATTAATAGTGTTGATTTTGGAGCTGTCAATGATCCCGGAGAGCTCACTGCTCACATGAGGATCTAAAGA ]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_8123#0 GGTGACTTCTATGCCCTCAGAGTACCTAAGGCAAGGGGAAGCTGAGATGATAGTTCCTTT 60
consensus_8123#1 -----AATCTATGCCCTCAGAGTACCTAAGGCAAGGGGAAGCTGAGATGATAGTTCCTTT 55
*****************************************************
consensus_8123#0 ATGGCTCAACGTACTTCATGATGCAGCCTCAGACTATCTTCACAGTAGGACTGGTGATAA 120
consensus_8123#1 ATGGCTCAGCGTACTTCATGATGCAGCCTCAGACTATCTTCACAGTAGGACTGGTGATAA 115
******** ***************************************************
consensus_8123#0 TGTCAGAAACAACCATGCTTACATGCAAGGGAAAGGCGGAAGAACCCTTAAGCGTATAGT 180
consensus_8123#1 TGTCAGAAACAACCATGCTTACATGCAAGGGAAAGGCGGAAGAACCCTTAAGCGTATTGC 175
********************************************************* *
consensus_8123#0 CAGGGACTTTGCAGAAAGCCATCGGAATGCCCCCATGCCCTGCCCTTCGTAACGTGTTTG 240
consensus_8123#1 CAGGGACTTTGCAGAAAGCCATCGGAATGCCCCCATGCCCTGCCCTTCATAACGTGTTTG 235
************************************************ ***********
consensus_8123#0 ATGAAACTACCTCGTGCGGATGGAACTGCCGCGATTAATAGTGTTGATTTTGGAGCTGTC 300
consensus_8123#1 ATGAAACTACCTCATGCGGATGGAACTGCCGCGATTAATAGTGTTGATTTTGGAGCTGTC 295
************* **********************************************
consensus_8123#0 AATGATCCCGGAGAGCTCACTGCTCACATGAGGATCTAAAGAGAGACCGTGTGGAGCTTC 360
consensus_8123#1 AATGATCCCGGAGAGCTCACTGCTCACATGAGGATCTAAAGAGAGACCGTGTGGAGCTTC 355
************************************************************
consensus_8123#0 TGTCTGGCGTTACGGGTATGTCACAATGCTGATCCCAAAGGCTTGATCTCCACATATTCC 420
consensus_8123#1 TGTCTGGCGTTACGGGTATATCACAATGCTGATACCAAAGGTTTGATCTCCACATATTCC 415
******************* ************* ******* ******************
consensus_8123#0 ATCCGTTATCTTTTAGCGGGATTAGGAGGTCGTTTGGTGCCTATTATGCAAAAGACCTGG 480
consensus_8123#1 ATCCGTTATCTTTTAGCGGGATTAGGAGGTCGTTTGGTGCCTATTATGCAAAAGACCTGG 475
************************************************************
consensus_8123#0 -------------------------------CTGCAAGGGACAAGGTCACTCTGCAGACT 509
consensus_8123#1 TTTGGAGTCTGTTTCTCCTTTTGCATAGCGGCTGCAAGGGACAAGGTCACTCTGCAGACT 535
*****************************
consensus_8123#0 AGTGGCTGCTCTGAGATTTGAGTGGGTCAGGATCCTTGAGGCCAATGACCGTTCCTCAAG 569
consensus_8123#1 AGTAGCTGCTC--AGATTTGAGTGGGTCAGTATCCTCGAGGCCAATGACCGTTCTTCAAG 593
*** ******* ***************** ***** ***************** *****
consensus_8123#0 TTGGAGTTTGCTATGCTATACTCTTGGAAACACATGGTTTAGCTGTCGCATACTCCA-CA 628
consensus_8123#1 TTGGAGTTTGCTATGCTATACTCTTGGAAACACATGGTTTAGCTGTGGCATACTCCAACA 653
********************************************** ********** **
consensus_8123#0 TCTTCTG-TTTTTTGGGAAGCTGGGAACGAAGAGGTCAGAGGTGAATTTTATAGCTCTCT 687
consensus_8123#1 TCTTCTGGTTTTTTGGGAAGCTGGGAACGAAGAGGTCAGAGGTGAATTTTATAGCTCTCT 713
******* ****************************************************
consensus_8123#0 ACACCCTCTTTTCACAACCCGTGCGATGTACAAAACATTCATCTGTATTCTGTCTCAAAT 747
consensus_8123#1 ACACCCTCTTTTCACAACCCGTGCGATGTACAAAACATTCATCTGTATTCTGTCTCAAAT 773
************************************************************
consensus_8123#0 TTTGAGTTCATTACCTAAGTTATATGTGGGCATGTCCGCATGTGATCAAAGCCATCAGCA 807
consensus_8123#1 TTTGAGTTCATTACCTAAGTTATATGTGGGCATGTCCGCATGTGATCAAAGCCATCAGCA 833
************************************************************
consensus_8123#0 TGTCAAGTGAAATTTTGAGGGGGAAGATTTTGAGAAATGTATATATAATTGCTAGCTCAT 867
consensus_8123#1 TGTCAAGTGAAATTTTGAGGGGTAAGATTTTGAGAAATGTATATATAATTGCTAGCTCAT 893
********************** *************************************
consensus_8123#0 GAATCTCCCCTTTAAAACTGAATGGGGTTTAAAAGACTTGTATAGATATTTATGTGGCCT 927
consensus_8123#1 GAATCTCCCCTTTAAAACTAAATGGGGTTTGAAAGACTCATATAGATATTTATGTGGCCT 953
******************* ********** ******* ********************
consensus_8123#0 CATTCGGATCAGATCTTGCATGCGATTTTCATGTTAAGTGAGAAATGTGTAGTTAGTGTT 987
consensus_8123#1 ------------------------------------------------------------
consensus_8123#0 GACAACCAACCTTAAA 1003
consensus_8123#1 ----------------
|
| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||