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Oryza sativa
cluster # 8124 cluster # 8124       Sequences # 5       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_8124#0 length = 1009 sequences # 3  
consensus_8124#1 length = 793 sequences # 2  

consensusID : consensus_8124#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 1009
fasta sequence
                              [TCTTTTTTTTACAGAGCCAAATAAATGTCCAGATTATACATTCCAAAATATAAATACAGTCCAAATTACAAGTTGCATTAATACATAGTATGTCATTCCAATTCAATCCCTGCAATATGCAAAAGTTCCTATTGCAACCAGGCTACCTCCCTTCCCTGTCAGCCCAGCTCATCTCACAACAAGTCTGTTTTGCCTCCCTAAGCTCAGAGCTGCAGCCAACCAAGCAACCTCCTCAGCCAAAGTCTGTATTCCCTCCCCAGCCGACCTGGCAGCCACTCATGCTCTCTTTCTCAGCCAACCACCAGAAGTCTATTTTGCCTCCCTCAGAACAGCAGCATGCACAGAACATGTTCGATAAATTGCCCACAAGCCACAACAGGGTTTCACACCCACTTTTGCCGGCACAACACAGAGTCTTGCACCAAACATTCACAGCCATCAAATGCCCTGGAGCCCTCCCCAACAGCAGCAATACATTCACCATGAACCCAATCCACAAAACCCTCCACCAAATACATGCAACCACAGAACCAAGTTCACTGAGAAGGGCAACGCCAAGATCACACCGAAAGGTGGCAAAGCCAAGTACGATGGGCCATGCGTACCTGGTAGTGTGGCGATGTCGACGTTTTGGCACTGCTCCCTGCCCACCCTCACATCGCCTCCCATGCACAGGCAGCCAGCAAACCTATATAAACCCCACCAAAGACAGCAGCAGCTCGGCTCCTCTCCATTTCTTCTCCACCTCCACGCTCGAGCTCTGCCACTGCACTCCTCAGTCCCGTGCACAAGCTGCCATCCCTCCATTTGCTCCGCCGCGGCCGGCTCCGGCTGGGCCTCAGTTGAGCAAGAGGACGGATAGGCTGCCGCACCATTGATCACCCGAGAACGACTAACTTTAACATCTAACCCTTGACTCACTAACCAGCTAACCTTTTTCTTTCTGTTTCACTGACTCTTCCATTTTCAGTTTCGCTAACCTCTGACTCTCTAACTCTTTCTTTTTGGA]

[+] EMBL CB674519             [TCTTTTTTTTACAGAGCCAAATAAATGTCCAGATTATACATTCCAAAATATAAATACAGTCCAAATTACAAGTTGCATTAATACATAGTATGTCATTCCAATTCAATCCCTGCAATATGCAAAAGTTCCTATTGCAACCAGGCTACCTCCCTTCCCTGTCAGCCCAGCTCATCTCACAACAAGTCTGTTTTGCCTCCCTAAGCTCAGAGCTGCAGCCAACCAAGCAACCTCCTCAGCCAAAGTCTGTATTCCCTCCCCAGCCGACCTGGCAGCCACTCATGCTCTCTTTCTCAGCCAACCACCAGAAGTCTATTTTGCCTCCCTCAGAACAGCAGCATGCACAGAACATGTTCGATAAATTGCCCACAAGCCACAACAGGGTTTCACACCCACTTTTGCCGGCACAACACAGAGTCTTGCACCAAACATTCACAGCCATCAAATGCCCTGGAGCCCTCCCCAACAGCAGCAATACATTCACCATGAACCCAATCCACAAAACCCTCCACCAAATACATGCAACCACAGAACCAAGTTCACTGAGAAGGGCAACGCCAAGATCACACCGAAAGGTGGCAAAGCCAAGTACGATGGGCCATGCGTACCTGGTAGTGTGGCGATGTCGACGTTTTGGCACTGCTCCCTGCCCACCCTCACATCGCCTCCCATGCACAGGCAGCCAGCAAACCTATATAAACCCCACCAAAGACAGCAGCAGCTCGGCTCCTCTCCATTTCTTCTCCACCTCCACGCTCGAGCTCTGCCACTGCACTCCTCAGTCCCGTGCACAAGCTGCCATCC                                                                                                                                                                                                                ]
[-] EMBL AK112058             [                    ATAAATGTCCAGATTATACATTCCAAAATATAAATACAGTCCAAATTACAAGTTGCATTAATACATAGTATGTCATTCCAATTCAATCCCTGCAATATGCAAAAGTTCCTATTGCAACCAGGCTACCTCCCTTCCCTGTCAGCCCAGCTCATCTCACAACAAGTCTGTTTTGCCTCCCTAAGCTCAGAGCTGCAGCCAACCAAGCAACCTCCTCAGCCAAAGTCTGTATTCCCTCCCCAGCCGACCTGGCAGCCACTCATGCTCTCTTTCTCAGCCAACCACCAGAAGTCTATTTTGCCTCCCTCAGAACAGCAGCATGCACAGAACATGTTCGATAAATTGCCCACAAGCCACAACAGGGTTTCACACCCACTTTTGCCGGCACAACACAGAGTCTTGCACCAAACATTCACAGCCATCAAATGCCCTGGAGCCCTCCCCAACAGCAGCAATACATTCACCATGAACCCAATCCACAAAACCC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                         ]
[-] EMBL CB674518             [                                                                                                                                                                                                                                                                                CCACTCATGCTCTCTTTCTCAGCCAACCACCAGAAGTCTATTTTGCCTCCCTCAGAACAGCAGCATGCACAGAACATGTTCGATAAATTGCCCACAAGCCACAACAGGGTATCACACCCACTTTTGCCGGCACAACACAGAGTCTTGCACCAAACATTCACAGCCATCAAATGCCCTGGAGCCCTCCCCAACAGCAGCAATACATTCACCATGAACCCAATCCACAAAACCCTCCACCAAATACATGCAACCACAGAACCAAGTTCACTGAGAAGGGCAACGCCAAGATCACACCGAAAGGTGGCAAAGCCAAGTACGATGGGCCATGCGTACCTGGTAGTGTGGCGATGTCGACGTTTTGGCACTGCTCCCTGCCCACCCTCACATCGCCTCCCATGCACAGGCAGCCAGCAAACCTATATAAACCCCACCAAAGACAGCAGCAGCTCGGCTCCTCTCCATTTCTTCTCCACCTCCACGCTCGAGCTCTGCCACTGCACTCCTCAGTCCCGTGCACAAGCTGCCATCCCTCCATTTGCTCCGCCGCGGCCGGCTCCGGCTGGGCCTCAGTTGAGCAAGAGGACGGATAGGCTGCCGCACCATTGATCACCCGAGAACGACTAACTTTAACATCTAACCCTTGACTCACTAACCAGCTAACCTTTTTCTTTCTGTTTCACTGACTCTTCCATTTTCAGTTTCGCTAACCTCTGACTCTCTAACTCTTTCTTTTTGGA]


>consensus_8124#0 TCTTTTTTTTACAGAGCCAAATAAATGTCCAGATTATACATTCCAAAATATAAATACAGT CCAAATTACAAGTTGCATTAATACATAGTATGTCATTCCAATTCAATCCCTGCAATATGC AAAAGTTCCTATTGCAACCAGGCTACCTCCCTTCCCTGTCAGCCCAGCTCATCTCACAAC AAGTCTGTTTTGCCTCCCTAAGCTCAGAGCTGCAGCCAACCAAGCAACCTCCTCAGCCAA AGTCTGTATTCCCTCCCCAGCCGACCTGGCAGCCACTCATGCTCTCTTTCTCAGCCAACC ACCAGAAGTCTATTTTGCCTCCCTCAGAACAGCAGCATGCACAGAACATGTTCGATAAAT TGCCCACAAGCCACAACAGGGTTTCACACCCACTTTTGCCGGCACAACACAGAGTCTTGC ACCAAACATTCACAGCCATCAAATGCCCTGGAGCCCTCCCCAACAGCAGCAATACATTCA CCATGAACCCAATCCACAAAACCCTCCACCAAATACATGCAACCACAGAACCAAGTTCAC TGAGAAGGGCAACGCCAAGATCACACCGAAAGGTGGCAAAGCCAAGTACGATGGGCCATG CGTACCTGGTAGTGTGGCGATGTCGACGTTTTGGCACTGCTCCCTGCCCACCCTCACATC GCCTCCCATGCACAGGCAGCCAGCAAACCTATATAAACCCCACCAAAGACAGCAGCAGCT CGGCTCCTCTCCATTTCTTCTCCACCTCCACGCTCGAGCTCTGCCACTGCACTCCTCAGT CCCGTGCACAAGCTGCCATCCCTCCATTTGCTCCGCCGCGGCCGGCTCCGGCTGGGCCTC AGTTGAGCAAGAGGACGGATAGGCTGCCGCACCATTGATCACCCGAGAACGACTAACTTT AACATCTAACCCTTGACTCACTAACCAGCTAACCTTTTTCTTTCTGTTTCACTGACTCTT CCATTTTCAGTTTCGCTAACCTCTGACTCTCTAACTCTTTCTTTTTGGA



consensusID : consensus_8124#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 793
fasta sequence
                              [TTTCTTTTTTTTTACAGAGCCAAATAAATGTCCAAATTATACATTCCAAAATATAAATACAGTCCAAATTACAAGGTCCATTAATACATATGTCATTCCAATTCAATCCCTGCAATATGCAAAAGTTCCTATTGCAACCAGGCCACCTCCCTTCCCTGTCAACCCAGCTCATCTCACAAAAAGTCTGTTTTGCCTCCCTAACCTCAGAGCTACAGCCACCAAGCAACCTTCTCAGCCAAAGTCTGTTTTCCCTCCCCAGCCGAACCAGCTGCCTGCACAGAAGCTGTTCGATGAATTGCCTACAAGCCGCAACAGGGTTTAGCACCAACTATTGCCGGCTCACAACAGGATTTTGCACCAAAATATGCGGCCATTCAATAACATGGGTCCCTTCCACACAGCAAACCATGCACCCATGCTCCCGGTTCACAAAATTCATTCCCAAAATACAAACAACACAATGAGGAAGATCCACAACACCAAGTTCACACCGAAAATGGCAGAGCCAAGTGCAAGGGGCCATGCATACCTGGTACTGTGGCGATGTCAACATTCAGAGCTGCTCCCCGCCTACCCTCACATTGCCTCCCATACACAGGCAGCCAGCAAACCTATATGAACCCCACCAAAGACAGCAGCAGCTCGGCTCCTCTCCATTTCTTCTCCACCTCCACGCTCGAGCTCTGCCACTGCGCTCCTCAGTCCCGTGCACAAGCTGCCATCCCTCCATTTGCTCCGCCGCGGCCGGCTCCGGCTGGGCCTCAGTTGAGCAAGAGGACGGATAGGCCGCCGC]

[+] EMBL CB650067             [TTTCTTTTTTTTTACAGAGCCAAATAAATGTCCAAATTATACATTCCAAAATATAAATACAGTCCAAATTACAAGGTCCATTAATACATATGTCATTCCAATTCAATCCCTGCAATATGCAAAAGTTCCTATTGCAACCAGGCCACCTCCCTTCCCTGTCAACCCAGCTCATCTCACAAAAAGTCTGTTTTGCCTCCCTAACCTCAGAGCTACAGCCACCAAGCAACCTTCTCAGCCAAAGTCTGTTTTCCCTCCCCAGCCGAACCAGCTGCCTGCACAGAAGCTGTTCGATGAATTGCCTACAAGCCGCAACAGGGTTTAGCACCAACTATTGCCGGCTCACAACAGGATTTTGCACCAAAATATGCGGCCATTCAATAACATGGGTCCCTTCCACACAGCAAACCATGCACCCATGCTCCCGGTTCACAAAATTCATTCCCAAAATACAAACAACACAATGAGGAAGATCCACAACACCAAGTTCACACCGAAAATGGCAGAGCCAAGTGCAAGGGGCCATGCATACCTGGTACTGTGGCGATGTCAACATTCAGAGCTGCTCCCCGCCTACCCTCACATTGCCTCCCATACACAGGCAGCCAGCAAACCTATATGAACCCCACCAAAGACAGCAGCAGCTCGGCTCCTCTCCATTTCTTCTCCACCTCCACGCTCGAGCTCTGCCACTGCGCTCCTCAGTCCCGTGCACAAGCTGCCATCCCTCCATTTGCTCCGCCGCGGCCGGCTCCGGCTGGGCCTCAGTTGAGCAAGAGGACGGATAGGCCGCCG ]
[-] EMBL AK063227             [                       ATAAATGTCCAGATTATACATTCCAAAATATAAATACAGTCCAAATTACAAGTTCCATTAATACATATGTCATTCCAATTCAATCCCTGCAATATGCAAAAGTTCCTATTGCAACCAGGCCACCTCCCTTCCCTGTCAGCCCAGCTCATCTCACAGAAAGTCTGTTTTGCCTCCCTAACCTCAGAGCTACAGCCACCAAGCAACCTTCTCAGCCAAAGTCTGTTTTCCCTCCCCAGCCGAACCAGCTGCCTGCACAGAAGCTGTTCGATGAATTGCCTACAAGCCGCAACAGGGTTTAGCACCAACTATTGCCGGCTCACAACAGGATTTTGCACCAAAATATGCGGCCATTCAATAACATGGGTCCCTTCCACACAGCAAACCATGCACCCATGCTCCCGGTTCACAAAATTCATTCCCAAAATACAAACAACACAATGAGGAAGATCCACAACACCAAGTTCACACCGAAAATGGCAGAGCCAAGTGCAAGGGGCCATGCATACCTGGTACTGTGGCGATGTCGACATTCAGAGCTGCTCCCCGCCTACCCTCACATTGCCTCCCATACACAGGCAGCCAGCAAACCTATATGAACCCCACCAAAGACAGCAGCAGCTCGGCTCCTCTCCATTTCTTCTCCACCTCCACGCTCGAGCTCTGCCACTGCGCTCCTCAGTCCCGTGCACAAGCTGCCATCCCTCCATTTGCTCCGCCGCGGCCGGCTCCGGCTGGGCCTCAGTTGAGCAAGAGGACGGATAGGCCGCCGC]


>consensus_8124#1 TTTCTTTTTTTTTACAGAGCCAAATAAATGTCCAAATTATACATTCCAAAATATAAATAC AGTCCAAATTACAAGGTCCATTAATACATATGTCATTCCAATTCAATCCCTGCAATATGC AAAAGTTCCTATTGCAACCAGGCCACCTCCCTTCCCTGTCAACCCAGCTCATCTCACAAA AAGTCTGTTTTGCCTCCCTAACCTCAGAGCTACAGCCACCAAGCAACCTTCTCAGCCAAA GTCTGTTTTCCCTCCCCAGCCGAACCAGCTGCCTGCACAGAAGCTGTTCGATGAATTGCC TACAAGCCGCAACAGGGTTTAGCACCAACTATTGCCGGCTCACAACAGGATTTTGCACCA AAATATGCGGCCATTCAATAACATGGGTCCCTTCCACACAGCAAACCATGCACCCATGCT CCCGGTTCACAAAATTCATTCCCAAAATACAAACAACACAATGAGGAAGATCCACAACAC CAAGTTCACACCGAAAATGGCAGAGCCAAGTGCAAGGGGCCATGCATACCTGGTACTGTG GCGATGTCAACATTCAGAGCTGCTCCCCGCCTACCCTCACATTGCCTCCCATACACAGGC AGCCAGCAAACCTATATGAACCCCACCAAAGACAGCAGCAGCTCGGCTCCTCTCCATTTC TTCTCCACCTCCACGCTCGAGCTCTGCCACTGCGCTCCTCAGTCCCGTGCACAAGCTGCC ATCCCTCCATTTGCTCCGCCGCGGCCGGCTCCGGCTGGGCCTCAGTTGAGCAAGAGGACG GATAGGCCGCCGC



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_8124#0      ---TCTTTTTTTTACAGAGCCAAATAAATGTCCAGATTATACATTCCAAAATATAAATAC 57
consensus_8124#1      TTTCTTTTTTTTTACAGAGCCAAATAAATGTCCAAATTATACATTCCAAAATATAAATAC 60
                           ***************************** *************************

consensus_8124#0      AGTCCAAATTACAAGTTGCATTAATACATAGTATGTCATTCCAATTCAATCCCTGCAATA 117
consensus_8124#1      AGTCCAAATTACAAGGTCCATTAATACATA---TGTCATTCCAATTCAATCCCTGCAATA 117
                      *************** * ************   ***************************

consensus_8124#0      TGCAAAAGTTCCTATTGCAACCAGGCTACCTCCCTTCCCTGTCAGCCCAGCTCATCTCAC 177
consensus_8124#1      TGCAAAAGTTCCTATTGCAACCAGGCCACCTCCCTTCCCTGTCAACCCAGCTCATCTCAC 177
                      ************************** ***************** ***************

consensus_8124#0      AACAAGTCTGTTTTGCCTCCCTAAGCTCAGAGCTGCAGCCAACCAAGCAACCTCCTCAGC 237
consensus_8124#1      AAAAAGTCTGTTTTGCCTCCCTAACCTCAGAGCTACAGCCA-CCAAGCAACCTTCTCAGC 236
                      ** ********************* ********* ****** *********** ******

consensus_8124#0      CAAAGTCTGTATTCCCTCCCCAGCCGACCTGGCAGCCACTCATGCTCTCTTTCTCAGCCA 297
consensus_8124#1      CAAAGTCTGTTTTCCCTCCCCAGCCGAACCAGCTGCC----------------------- 273
                      ********** **************** *  ** ***                       

consensus_8124#0      ACCACCAGAAGTCTATTTTGCCTCCCTCAGAACAGCAGCATGCACAGAACATGTTCGATA 357
consensus_8124#1      ----------------------------------------TGCACAGAAGCTGTTCGATG 293
                                                              *********  ******** 

consensus_8124#0      AATTGCCCACAAGCCACAACAGGGTTTCACACCCACTTTTGCCGGCACAACACAGAGTCT 417
consensus_8124#1      AATTGCCTACAAGCCGCAACAGGGTTTAGCACCAACTATTGCCGGCTCACAACAGGATTT 353
                      ******* ******* ***********  **** *** ******** **  ****  * *

consensus_8124#0      TGCACCAAACATTCACAGCCATCAAATGCCCTGGAGCCCTCCCCAACAGCAG-CAATACA 476
consensus_8124#1      TGCACCAAA-ATATGCGGCCATTCAATAACATGGGTCCCTTCCACACAGCAAACCATGCA 412
                      ********* **   * *****  ***  * ***  **** **  ******  * ** **

consensus_8124#0      TTCACCATGAACCCAATCCACAAAACCC-TCCACCAAATACATGCAACCACAGAACCAAG 535
consensus_8124#1      C---CCATGCTCCCGGTTCACAAAATTCATTCCCAAAATACA---AACAACACAATGAGG 466
                          *****  ***  * *******  * * * * *******   *** *** **  * *

consensus_8124#0      TTCACTGAGAAGGGCAACGCCAAGATCACACCGAAAGGTGGCAAAGCCAAGTACGATGGG 595
consensus_8124#1      ------AAGATCCACAACACCAAGTTCACACCGAAAA-TGGCAGAGCCAAGTGCAAGGGG 519
                             ***    **** ***** ***********  ***** ******** * * ***

consensus_8124#0      CCATGCGTACCTGGTAGTGTGGCGATGTCGACGTTTTGGCACTGCTCCCTGCCCACCCTC 655
consensus_8124#1      CCATGCATACCTGGTACTGTGGCGATGTCAACATTC-AGAGCTGCTCCCCGCCTACCCTC 578
                      ****** ********* ************ ** **   *  ******** *** ******

consensus_8124#0      ACATCGCCTCCCATGCACAGGCAGCCAGCAAACCTATATAAACCCCACCAAAGACAGCAG 715
consensus_8124#1      ACATTGCCTCCCATACACAGGCAGCCAGCAAACCTATATGAACCCCACCAAAGACAGCAG 638
                      **** ********* ************************ ********************

consensus_8124#0      CAGCTCGGCTCCTCTCCATTTCTTCTCCACCTCCACGCTCGAGCTCTGCCACTGCACTCC 775
consensus_8124#1      CAGCTCGGCTCCTCTCCATTTCTTCTCCACCTCCACGCTCGAGCTCTGCCACTGCGCTCC 698
                      ******************************************************* ****

consensus_8124#0      TCAGTCCCGTGCACAAGCTGCCATCCCTCCATTTGCTCCGCCGCGGCCGGCTCCGGCTGG 835
consensus_8124#1      TCAGTCCCGTGCACAAGCTGCCATCCCTCCATTTGCTCCGCCGCGGCCGGCTCCGGCTGG 758
                      ************************************************************

consensus_8124#0      GCCTCAGTTGAGCAAGAGGACGGATAGGCTGCCGCACCATTGATCACCCGAGAACGACTA 895
consensus_8124#1      GCCTCAGTTGAGCAAGAGGACGGATAGGCCGCCGC------------------------- 793
                      ***************************** *****                         

consensus_8124#0      ACTTTAACATCTAACCCTTGACTCACTAACCAGCTAACCTTTTTCTTTCTGTTTCACTGA 955
consensus_8124#1      ------------------------------------------------------------
                                                                                  

consensus_8124#0      CTCTTCCATTTTCAGTTTCGCTAACCTCTGACTCTCTAACTCTTTCTTTTTGGA 1009
consensus_8124#1      ------------------------------------------------------
                                                                            




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)