These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8124#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1009 fasta sequence [TCTTTTTTTTACAGAGCCAAATAAATGTCCAGATTATACATTCCAAAATATAAATACAGTCCAAATTACAAGTTGCATTAATACATAGTATGTCATTCCAATTCAATCCCTGCAATATGCAAAAGTTCCTATTGCAACCAGGCTACCTCCCTTCCCTGTCAGCCCAGCTCATCTCACAACAAGTCTGTTTTGCCTCCCTAAGCTCAGAGCTGCAGCCAACCAAGCAACCTCCTCAGCCAAAGTCTGTATTCCCTCCCCAGCCGACCTGGCAGCCACTCATGCTCTCTTTCTCAGCCAACCACCAGAAGTCTATTTTGCCTCCCTCAGAACAGCAGCATGCACAGAACATGTTCGATAAATTGCCCACAAGCCACAACAGGGTTTCACACCCACTTTTGCCGGCACAACACAGAGTCTTGCACCAAACATTCACAGCCATCAAATGCCCTGGAGCCCTCCCCAACAGCAGCAATACATTCACCATGAACCCAATCCACAAAACCCTCCACCAAATACATGCAACCACAGAACCAAGTTCACTGAGAAGGGCAACGCCAAGATCACACCGAAAGGTGGCAAAGCCAAGTACGATGGGCCATGCGTACCTGGTAGTGTGGCGATGTCGACGTTTTGGCACTGCTCCCTGCCCACCCTCACATCGCCTCCCATGCACAGGCAGCCAGCAAACCTATATAAACCCCACCAAAGACAGCAGCAGCTCGGCTCCTCTCCATTTCTTCTCCACCTCCACGCTCGAGCTCTGCCACTGCACTCCTCAGTCCCGTGCACAAGCTGCCATCCCTCCATTTGCTCCGCCGCGGCCGGCTCCGGCTGGGCCTCAGTTGAGCAAGAGGACGGATAGGCTGCCGCACCATTGATCACCCGAGAACGACTAACTTTAACATCTAACCCTTGACTCACTAACCAGCTAACCTTTTTCTTTCTGTTTCACTGACTCTTCCATTTTCAGTTTCGCTAACCTCTGACTCTCTAACTCTTTCTTTTTGGA] [+] EMBL CB674519 [TCTTTTTTTTACAGAGCCAAATAAATGTCCAGATTATACATTCCAAAATATAAATACAGTCCAAATTACAAGTTGCATTAATACATAGTATGTCATTCCAATTCAATCCCTGCAATATGCAAAAGTTCCTATTGCAACCAGGCTACCTCCCTTCCCTGTCAGCCCAGCTCATCTCACAACAAGTCTGTTTTGCCTCCCTAAGCTCAGAGCTGCAGCCAACCAAGCAACCTCCTCAGCCAAAGTCTGTATTCCCTCCCCAGCCGACCTGGCAGCCACTCATGCTCTCTTTCTCAGCCAACCACCAGAAGTCTATTTTGCCTCCCTCAGAACAGCAGCATGCACAGAACATGTTCGATAAATTGCCCACAAGCCACAACAGGGTTTCACACCCACTTTTGCCGGCACAACACAGAGTCTTGCACCAAACATTCACAGCCATCAAATGCCCTGGAGCCCTCCCCAACAGCAGCAATACATTCACCATGAACCCAATCCACAAAACCCTCCACCAAATACATGCAACCACAGAACCAAGTTCACTGAGAAGGGCAACGCCAAGATCACACCGAAAGGTGGCAAAGCCAAGTACGATGGGCCATGCGTACCTGGTAGTGTGGCGATGTCGACGTTTTGGCACTGCTCCCTGCCCACCCTCACATCGCCTCCCATGCACAGGCAGCCAGCAAACCTATATAAACCCCACCAAAGACAGCAGCAGCTCGGCTCCTCTCCATTTCTTCTCCACCTCCACGCTCGAGCTCTGCCACTGCACTCCTCAGTCCCGTGCACAAGCTGCCATCC ] [-] EMBL AK112058 [ ATAAATGTCCAGATTATACATTCCAAAATATAAATACAGTCCAAATTACAAGTTGCATTAATACATAGTATGTCATTCCAATTCAATCCCTGCAATATGCAAAAGTTCCTATTGCAACCAGGCTACCTCCCTTCCCTGTCAGCCCAGCTCATCTCACAACAAGTCTGTTTTGCCTCCCTAAGCTCAGAGCTGCAGCCAACCAAGCAACCTCCTCAGCCAAAGTCTGTATTCCCTCCCCAGCCGACCTGGCAGCCACTCATGCTCTCTTTCTCAGCCAACCACCAGAAGTCTATTTTGCCTCCCTCAGAACAGCAGCATGCACAGAACATGTTCGATAAATTGCCCACAAGCCACAACAGGGTTTCACACCCACTTTTGCCGGCACAACACAGAGTCTTGCACCAAACATTCACAGCCATCAAATGCCCTGGAGCCCTCCCCAACAGCAGCAATACATTCACCATGAACCCAATCCACAAAACCC ] [-] EMBL CB674518 [ CCACTCATGCTCTCTTTCTCAGCCAACCACCAGAAGTCTATTTTGCCTCCCTCAGAACAGCAGCATGCACAGAACATGTTCGATAAATTGCCCACAAGCCACAACAGGGTATCACACCCACTTTTGCCGGCACAACACAGAGTCTTGCACCAAACATTCACAGCCATCAAATGCCCTGGAGCCCTCCCCAACAGCAGCAATACATTCACCATGAACCCAATCCACAAAACCCTCCACCAAATACATGCAACCACAGAACCAAGTTCACTGAGAAGGGCAACGCCAAGATCACACCGAAAGGTGGCAAAGCCAAGTACGATGGGCCATGCGTACCTGGTAGTGTGGCGATGTCGACGTTTTGGCACTGCTCCCTGCCCACCCTCACATCGCCTCCCATGCACAGGCAGCCAGCAAACCTATATAAACCCCACCAAAGACAGCAGCAGCTCGGCTCCTCTCCATTTCTTCTCCACCTCCACGCTCGAGCTCTGCCACTGCACTCCTCAGTCCCGTGCACAAGCTGCCATCCCTCCATTTGCTCCGCCGCGGCCGGCTCCGGCTGGGCCTCAGTTGAGCAAGAGGACGGATAGGCTGCCGCACCATTGATCACCCGAGAACGACTAACTTTAACATCTAACCCTTGACTCACTAACCAGCTAACCTTTTTCTTTCTGTTTCACTGACTCTTCCATTTTCAGTTTCGCTAACCTCTGACTCTCTAACTCTTTCTTTTTGGA] consensusID : consensus_8124#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 793 fasta sequence [TTTCTTTTTTTTTACAGAGCCAAATAAATGTCCAAATTATACATTCCAAAATATAAATACAGTCCAAATTACAAGGTCCATTAATACATATGTCATTCCAATTCAATCCCTGCAATATGCAAAAGTTCCTATTGCAACCAGGCCACCTCCCTTCCCTGTCAACCCAGCTCATCTCACAAAAAGTCTGTTTTGCCTCCCTAACCTCAGAGCTACAGCCACCAAGCAACCTTCTCAGCCAAAGTCTGTTTTCCCTCCCCAGCCGAACCAGCTGCCTGCACAGAAGCTGTTCGATGAATTGCCTACAAGCCGCAACAGGGTTTAGCACCAACTATTGCCGGCTCACAACAGGATTTTGCACCAAAATATGCGGCCATTCAATAACATGGGTCCCTTCCACACAGCAAACCATGCACCCATGCTCCCGGTTCACAAAATTCATTCCCAAAATACAAACAACACAATGAGGAAGATCCACAACACCAAGTTCACACCGAAAATGGCAGAGCCAAGTGCAAGGGGCCATGCATACCTGGTACTGTGGCGATGTCAACATTCAGAGCTGCTCCCCGCCTACCCTCACATTGCCTCCCATACACAGGCAGCCAGCAAACCTATATGAACCCCACCAAAGACAGCAGCAGCTCGGCTCCTCTCCATTTCTTCTCCACCTCCACGCTCGAGCTCTGCCACTGCGCTCCTCAGTCCCGTGCACAAGCTGCCATCCCTCCATTTGCTCCGCCGCGGCCGGCTCCGGCTGGGCCTCAGTTGAGCAAGAGGACGGATAGGCCGCCGC] [+] EMBL CB650067 [TTTCTTTTTTTTTACAGAGCCAAATAAATGTCCAAATTATACATTCCAAAATATAAATACAGTCCAAATTACAAGGTCCATTAATACATATGTCATTCCAATTCAATCCCTGCAATATGCAAAAGTTCCTATTGCAACCAGGCCACCTCCCTTCCCTGTCAACCCAGCTCATCTCACAAAAAGTCTGTTTTGCCTCCCTAACCTCAGAGCTACAGCCACCAAGCAACCTTCTCAGCCAAAGTCTGTTTTCCCTCCCCAGCCGAACCAGCTGCCTGCACAGAAGCTGTTCGATGAATTGCCTACAAGCCGCAACAGGGTTTAGCACCAACTATTGCCGGCTCACAACAGGATTTTGCACCAAAATATGCGGCCATTCAATAACATGGGTCCCTTCCACACAGCAAACCATGCACCCATGCTCCCGGTTCACAAAATTCATTCCCAAAATACAAACAACACAATGAGGAAGATCCACAACACCAAGTTCACACCGAAAATGGCAGAGCCAAGTGCAAGGGGCCATGCATACCTGGTACTGTGGCGATGTCAACATTCAGAGCTGCTCCCCGCCTACCCTCACATTGCCTCCCATACACAGGCAGCCAGCAAACCTATATGAACCCCACCAAAGACAGCAGCAGCTCGGCTCCTCTCCATTTCTTCTCCACCTCCACGCTCGAGCTCTGCCACTGCGCTCCTCAGTCCCGTGCACAAGCTGCCATCCCTCCATTTGCTCCGCCGCGGCCGGCTCCGGCTGGGCCTCAGTTGAGCAAGAGGACGGATAGGCCGCCG ] [-] EMBL AK063227 [ ATAAATGTCCAGATTATACATTCCAAAATATAAATACAGTCCAAATTACAAGTTCCATTAATACATATGTCATTCCAATTCAATCCCTGCAATATGCAAAAGTTCCTATTGCAACCAGGCCACCTCCCTTCCCTGTCAGCCCAGCTCATCTCACAGAAAGTCTGTTTTGCCTCCCTAACCTCAGAGCTACAGCCACCAAGCAACCTTCTCAGCCAAAGTCTGTTTTCCCTCCCCAGCCGAACCAGCTGCCTGCACAGAAGCTGTTCGATGAATTGCCTACAAGCCGCAACAGGGTTTAGCACCAACTATTGCCGGCTCACAACAGGATTTTGCACCAAAATATGCGGCCATTCAATAACATGGGTCCCTTCCACACAGCAAACCATGCACCCATGCTCCCGGTTCACAAAATTCATTCCCAAAATACAAACAACACAATGAGGAAGATCCACAACACCAAGTTCACACCGAAAATGGCAGAGCCAAGTGCAAGGGGCCATGCATACCTGGTACTGTGGCGATGTCGACATTCAGAGCTGCTCCCCGCCTACCCTCACATTGCCTCCCATACACAGGCAGCCAGCAAACCTATATGAACCCCACCAAAGACAGCAGCAGCTCGGCTCCTCTCCATTTCTTCTCCACCTCCACGCTCGAGCTCTGCCACTGCGCTCCTCAGTCCCGTGCACAAGCTGCCATCCCTCCATTTGCTCCGCCGCGGCCGGCTCCGGCTGGGCCTCAGTTGAGCAAGAGGACGGATAGGCCGCCGC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_8124#0 ---TCTTTTTTTTACAGAGCCAAATAAATGTCCAGATTATACATTCCAAAATATAAATAC 57 consensus_8124#1 TTTCTTTTTTTTTACAGAGCCAAATAAATGTCCAAATTATACATTCCAAAATATAAATAC 60 ***************************** ************************* consensus_8124#0 AGTCCAAATTACAAGTTGCATTAATACATAGTATGTCATTCCAATTCAATCCCTGCAATA 117 consensus_8124#1 AGTCCAAATTACAAGGTCCATTAATACATA---TGTCATTCCAATTCAATCCCTGCAATA 117 *************** * ************ *************************** consensus_8124#0 TGCAAAAGTTCCTATTGCAACCAGGCTACCTCCCTTCCCTGTCAGCCCAGCTCATCTCAC 177 consensus_8124#1 TGCAAAAGTTCCTATTGCAACCAGGCCACCTCCCTTCCCTGTCAACCCAGCTCATCTCAC 177 ************************** ***************** *************** consensus_8124#0 AACAAGTCTGTTTTGCCTCCCTAAGCTCAGAGCTGCAGCCAACCAAGCAACCTCCTCAGC 237 consensus_8124#1 AAAAAGTCTGTTTTGCCTCCCTAACCTCAGAGCTACAGCCA-CCAAGCAACCTTCTCAGC 236 ** ********************* ********* ****** *********** ****** consensus_8124#0 CAAAGTCTGTATTCCCTCCCCAGCCGACCTGGCAGCCACTCATGCTCTCTTTCTCAGCCA 297 consensus_8124#1 CAAAGTCTGTTTTCCCTCCCCAGCCGAACCAGCTGCC----------------------- 273 ********** **************** * ** *** consensus_8124#0 ACCACCAGAAGTCTATTTTGCCTCCCTCAGAACAGCAGCATGCACAGAACATGTTCGATA 357 consensus_8124#1 ----------------------------------------TGCACAGAAGCTGTTCGATG 293 ********* ******** consensus_8124#0 AATTGCCCACAAGCCACAACAGGGTTTCACACCCACTTTTGCCGGCACAACACAGAGTCT 417 consensus_8124#1 AATTGCCTACAAGCCGCAACAGGGTTTAGCACCAACTATTGCCGGCTCACAACAGGATTT 353 ******* ******* *********** **** *** ******** ** **** * * consensus_8124#0 TGCACCAAACATTCACAGCCATCAAATGCCCTGGAGCCCTCCCCAACAGCAG-CAATACA 476 consensus_8124#1 TGCACCAAA-ATATGCGGCCATTCAATAACATGGGTCCCTTCCACACAGCAAACCATGCA 412 ********* ** * ***** *** * *** **** ** ****** * ** ** consensus_8124#0 TTCACCATGAACCCAATCCACAAAACCC-TCCACCAAATACATGCAACCACAGAACCAAG 535 consensus_8124#1 C---CCATGCTCCCGGTTCACAAAATTCATTCCCAAAATACA---AACAACACAATGAGG 466 ***** *** * ******* * * * * ******* *** *** ** * * consensus_8124#0 TTCACTGAGAAGGGCAACGCCAAGATCACACCGAAAGGTGGCAAAGCCAAGTACGATGGG 595 consensus_8124#1 ------AAGATCCACAACACCAAGTTCACACCGAAAA-TGGCAGAGCCAAGTGCAAGGGG 519 *** **** ***** *********** ***** ******** * * *** consensus_8124#0 CCATGCGTACCTGGTAGTGTGGCGATGTCGACGTTTTGGCACTGCTCCCTGCCCACCCTC 655 consensus_8124#1 CCATGCATACCTGGTACTGTGGCGATGTCAACATTC-AGAGCTGCTCCCCGCCTACCCTC 578 ****** ********* ************ ** ** * ******** *** ****** consensus_8124#0 ACATCGCCTCCCATGCACAGGCAGCCAGCAAACCTATATAAACCCCACCAAAGACAGCAG 715 consensus_8124#1 ACATTGCCTCCCATACACAGGCAGCCAGCAAACCTATATGAACCCCACCAAAGACAGCAG 638 **** ********* ************************ ******************** consensus_8124#0 CAGCTCGGCTCCTCTCCATTTCTTCTCCACCTCCACGCTCGAGCTCTGCCACTGCACTCC 775 consensus_8124#1 CAGCTCGGCTCCTCTCCATTTCTTCTCCACCTCCACGCTCGAGCTCTGCCACTGCGCTCC 698 ******************************************************* **** consensus_8124#0 TCAGTCCCGTGCACAAGCTGCCATCCCTCCATTTGCTCCGCCGCGGCCGGCTCCGGCTGG 835 consensus_8124#1 TCAGTCCCGTGCACAAGCTGCCATCCCTCCATTTGCTCCGCCGCGGCCGGCTCCGGCTGG 758 ************************************************************ consensus_8124#0 GCCTCAGTTGAGCAAGAGGACGGATAGGCTGCCGCACCATTGATCACCCGAGAACGACTA 895 consensus_8124#1 GCCTCAGTTGAGCAAGAGGACGGATAGGCCGCCGC------------------------- 793 ***************************** ***** consensus_8124#0 ACTTTAACATCTAACCCTTGACTCACTAACCAGCTAACCTTTTTCTTTCTGTTTCACTGA 955 consensus_8124#1 ------------------------------------------------------------ consensus_8124#0 CTCTTCCATTTTCAGTTTCGCTAACCTCTGACTCTCTAACTCTTTCTTTTTGGA 1009 consensus_8124#1 ------------------------------------------------------ |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||