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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8125#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1080 fasta sequence
[GGCCGCCAGGTCGCCCTCCGAGGCGATGCTGCACGGCTTGATCCACTCCGCCATCCATGGGCACCCGGTCCCCGCCGCAACCAAGGCGTTCGTCGCGATGCTCCTCAAGGACTACCCCTCCCGTGACTGCGTCCAGAAGGTGCTCGACGAGGCGTTCCTGTCACGGCTGGAGACTGTCAAGGAGCTCATGGGGAAGTATGCCAGCCCGGATTTCAGGGTCGCGGTGGACAGCGATGAGCGGGACGCGATACAGAGGCTGAACCTGCAGTCCGCGGTATTGAATGTGAGACACTTGCTCTGGCTCATCGAGAGGATGGTCGAAATGAGGGTGGCCGGTAATGCGGTTAAGCTGTGGAGTGAGCAGGCTGCACTGACTGCTGATCTGCAGAAGTTGCTGAATGATGTGGATATGTGGAAGAATATTACTCCTGGGCTTCCTGTGCTTGTTACCAGATGCACGCTCAGGTTCGCCAATTCGGTTGTGAATGGGGAGACAATAGTTCCTCGTCAGGTGAGGACGAAGCTTGTCAGAAGTTGGCTTCCTGTCCTAAACGTCTGCAGGAACATGGTTCAGCCTATGCAGTGTGGATACAAGTCACCAAATTGCCAAGAGCTAGAGGAGACATTTCTTCAGATCATCTCCACCTTGCCTGTCCCAGATGCTCAGGAGTTGCTGCAACAGTGCCTCGGGTTCTCGACTCGCAACGTCGACGACTGCCCGCACTTGATCGCAGCCTTCAAGACATGGTTCAGGCGTGCTGGCCGGGCTCCTCAAGGTGCAGAAAATTGAGATGAGCGCTGCAGCTAGTGTCTGCCAACAGTGGGTGCTGTCTTGTGCGAAATCTCACATCTAGTTCAATGTAGTTCCTAACGCTGTTTCTGTACATTGTTGTACTACCTACCCTATCTATTGCCATGTAAGGTATATGATATGTACATAACAACATTTTTCTGTTCGTGTGAAACATGTTACCCAAGTGCAGATGAATGATGCACTAAACTAACTATTCACGCGTGCAATGTTCTTCCCTTCGGAATGTGAATATAACTTGACGACAAAGTGTATATTCAAAAAAAAGA]
[+] EMBL AK067666 [GGCCGCCAGGTCGCCCTCCGAGGCGATGCTGCACGGCTTGATCCACTCCGCCATCCATGGGCACCCGGTCCCCGCCGCAACCAAGGCGTTCGTCGCGATGCTCCTCAAGGACTACCCCTCCCGTGACTGCGTCCAGAAGGTGCTCGACGAGGCGTTCCTGTCACGGCTGGAGACTGTCAAGGAGCTCATGGGGAAGTATGCCAGCCCGGATTTCAGGGTCGCGGTGGACAGCGATGAGCGGGACGCGATACAGAGGCTGAACCTGCAGTCCGCGGTATTGAATGTGAGACACTTGCTCTGGCTCATCGAGAGGATGGTCGAAATGAGGGTGGCCGGTAATGCGGTTAAGCTGTGGAGTGAGCAGGCTGCACTGACTGCTGATCTGCAGAAGTTGCTGAATGATGTGGATATGTGGAAGAATATTACTCCTGGGCTTCCTGTGCTTGTTACCAGATGCACGCTCAGGTTCGCCAATTCGGTTGTGAATGGGGAGACAATAGTTCCTCGTCAGGTGAGGACGAAGCTTGTCAGAAGTTGGCTTCCTGTCCTAAACGTCTGCAGGAACATGGTTCAGCCTATGCAGTGTGGATACAAGTCACCAAATTGCCAAGAGCTAGAGGAGACATTTCTTCAGATCATCTCCACCTTGCCTGTCCCAGATGCTCAGGAGTTGCTGCAACAGTGCCTCGGGTTCTCGACTCGCAACGTCGACGACTGCCCGCACTTGATCGCAGCCTTCAAGACATGGTTCAGGCGTGCTGGCCGGGCTCCTCAAGGTGCAGAAAATTGAGATGAGCGCTGCAGCTAGTGTCTGCCAACAGTGGGTGCTGTCTTGTGCGAAATCTCACATCTAGTTCAATGTAGTTCCTAACGCTGTTTCTGTACATTGTTGTACTACCTACCCTATCTATTGCCATGTAAGGTATATGATATGTACATAACAACATTTTTCTGTTCGTGTGAAACATGTTACCCAAGTGCAGATGAATGATGCACTAAACTAACTATTCACGCGTGCAATGTTCTTCCCTTCGGAATGTGAATATAACTTGACGACAA ]
[-] EMBL CB642788 [ ATACAGAGGCTGAACCTGCAGTCCGCGGTATTGAATGTGAGACACTTGCTCTGGCTCATCGAGAGGATGGTCGAAATGAGGGTGGCCGGTAATGCGGTTAAGCTGTGGAGTGAGCAGGCTGCACTGACTGCTGATCTGCAGAAGTTGCTGAATGATGTGGATATGTGGAAGAATATTACTCCTGGGCTTCCTGTGCTTGTTACCAGATGCACGCTCAGGTTCGCCAATTCGGTTGTGAATGGGGAGACAATAGTTCCTCGTCAGGTGAGGACGAAGCTTGTCAGAAGTTGGCTTCCTGTCCTAAACGTCTGCAGGAACATGGTTCAGCCTATGCAGTGTGGATACAAGTCACCAAATTGCCAAGAGCTAGAGGAGACATTTCTTCAGATCATCTCCACCTTGCCTGTCCCAGATGCTCAGGAGTTGCTGCAACAGTGCCTCGGGTTCTCGACTCGCAACGTCGACGACTGCCCGCACTTGATCGCAGCCTTCAAGACATGGTTCAGGCGTGCTGGCCGGGCTCCTCAAGGTGCAGAAAATTGAGATGAGCGCTGCAGCTAGTGTCTGCCAACAGTGGGTGCTGTCTTGTGCGAAATCTCACATCTAGTTCAATGTAGTTCCTAACGCTGTTTCTGTACATTGTTGTACTACCTACCCTATCTATTGCCATGTAAGGTATATGATATGTACATAACAACATTTTTCTGTTCGTGTGAAACATGTTACCCAAGTGCAGATGAATGATGCACTAAACTAACTATTCACGCGTGCAATGTTCTTCCCTTCGGAATGTGAATATAACTTGACGACAAAGTGTATATTCAAAAAAAAGA]
consensusID : consensus_8125#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 987 fasta sequence
[GGCCGCCAGGTCGCCCTCCGAGGCGATGCTGCACGGCTTGATCCACTCCGCCATCCATGGGCACCCGGTCCCCGCCGCAACCAAGGCGTTCGTCGCGATGCTCCTCAAGGACTACCCCTCCCGTGACTGCGTCCAGAAGGTGCTCGACGAGGCGTTCCTGTCACGGCTGGAGACTGTCAAGGAGCTCATGGGGAAGTATGCCAGCCCGGATTTCAGGGTCGCGGTGGACAGCGATGAGCGGGACGCGATACAGAGGCTGAACCTGCAGTCCGCGGTATTGAATGTGAGACACTTGCTCTGGCTCATCGAGAGGATGGTCGAAATGAGGGTGGCCGGTGATGCGGTTAAGCTGTGGAGTGAGCAGGCTGCACTGACTGCTGATCTGCAGAAGTTGCTGAATGATGTGGATATGTGGAAGAATATTACTCCTGGGCTTCCTGTGCCTGTTACCAGATGCACGCTCAGGTTCGCCAATTCGGTTGTGAATGGGGAGACAATAGTTCCTCGTCAGGTGAGGACGAAGCTTGTCAGAAGTTGGCTTCCTGTCCTAAACGTCTGCAGGAACATGGTTCAGCCTATGCAGTGTGGATACAAGTCACCAAATTGCCAAGAGCTAGAGGAGACATTTCTTCAGATCATCTCCACCTTGCCTGTCCCAGATGCTCAGGAGTTGCTGCAACAGTGCCTCGGGTTCTCGACTCGCAACGTCGACGACTGCCCGCACTTGATCGCAGCCTTCAAGACATGGTTCAGGCGTGCTGGCCGGGCTCCTCAAGGTGCAGAAAATTGAGATGAGCGCTGCAGCTAGTGTCTGCCAACAGTGGGTGCTGTCTTGTGCGAAATCTCACATCTAGTTCAATGTAGTTCCTAACGCTGTTTCTGTACATTGTTGTACTACCTACCCTATCTATTGCCATGTAAGGTATATGATATGTACATAACAACATTTTTCTGTTCGTGTGAAAAAAAAAAAAAAAAAGGCCACAT]
[+] EMBL AK104988 [GGCCGCCAGGTCGCCCTCCGAGGCGATGCTGCACGGCTTGATCCACTCCGCCATCCATGGGCACCCGGTCCCCGCCGCAACCAAGGCGTTCGTCGCGATGCTCCTCAAGGACTACCCCTCCCGTGACTGCGTCCAGAAGGTGCTCGACGAGGCGTTCCTGTCACGGCTGGAGACTGTCAAGGAGCTCATGGGGAAGTATGCCAGCCCGGATTTCAGGGTCGCGGTGGACAGCGATGAGCGGGACGCGATACAGAGGCTGAACCTGCAGTCCGCGGTATTGAATGTGAGACACTTGCTCTGGCTCATCGAGAGGATGGTCGAAATGAGGGTGGCCGGTGATGCGGTTAAGCTGTGGAGTGAGCAGGCTGCACTGACTGCTGATCTGCAGAAGTTGCTGAATGATGTGGATATGTGGAAGAATATTACTCCTGGGCTTCCTGTGCCTGTTACCAGATGCACGCTCAGGTTCGCCAATTCGGTTGTGAATGGGGAGACAATAGTTCCTCGTCAGGTGAGGACGAAGCTTGTCAGAAGTTGGCTTCCTGTCCTAAACGTCTGCAGGAACATGGTTCAGCCTATGCAGTGTGGATACAAGTCACCAAATTGCCAAGAGCTAGAGGAGACATTTCTTCAGATCATCTCCACCTTGCCTGTCCCAGATGCTCAGGAGTTGCTGCAACAGTGCCTCGGGTTCTCGACTCGCAACGTCGACGACTGCCCGCACTTGATCGCAGCCTTCAAGACATGGTTCAGGCGTGCTGGCCGGGCTCCTCAAGGTGCAGAAAATTGAGATGAGCGCTGCAGCTAGTGTCTGCCAACAGTGGGTGCTGTCTTGTGCGAAATCTCACATCTAGTTCAATGTAGTTCCTAACGCTGTTTCTGTACATTGTTGTACTACCTACCCTATCTATTGCCATGTAAGGTATATGATATGTACATAACAACATTTTTCTGTTCGTGTGAAAAAAAAAAAAAAAAAGGCCACAT]
consensusID : consensus_8125#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 833 fasta sequence
[TATATGCACAAGAATTAAAAAGTAAAGCTCAACTCAAACTATACTATCAAATTATGAACTATCAGAACTGTTCAATTTTCAACCATGGTACAGATAGTTTTGGTTGACATAACATTGATGGTGTGTGGCCTGAGGCTGAGACAGTTTTTTTTGGGACTCAGCTAATCCTCTTGATCTCTGGCATAGCTGAACACACAATTTTATCTGATGATATCCTTGTAGCTCTCTGTCTAGTATTGCCAGATTTTCCATGGAGAGCTCATACTACATTATAATACACGCTTGTAGCTTTGTTCTTGTGTTTAATTGGGTCTGACATATATGACATTTCTGCTTCTCAGGTGAGGACGAAGCTTGTCAGAAGTTGGCTTCCTGTCCTAAACGTCTGCAGGAACATGGTTCAGCCTATGCAGTGTGGATACAAGTCACCAAATTGCCAAGAGCTAGAGGAGACATTTCTTCAGATCATCTCCACCTTGCCTGTCCCAGAT-GCTCAGGAGTTGCT-GCAACAGTGCCTCGGGTTCTCGACTCGCAACGTCGACGACTGCCCGCACTTGATCGCAGCCTTCAAGACATGGTTCAGGCGTGCTGGCCGGGCTCCT-CAAGGTGCAGAAAATTGAGATGAGCGCTGCAGCTAGTGTCTGCCAA-CA-GTGGGTGCTGTCTTGTGCGAAATCTCACATCTAGTTCAATGT-AGTTCCTAACGCTGT-TTCTGTACATTGT-TGT-ACTACCTACCCT-ATCTATTGCCATGTAAGGTATATGATATGTACATAACAACATTTTTCTGTTCGTGTGAAACATGTTACCCAAGTGCAGATGAATGATGCACTAAACTA]
[-] EMBL CB671172 [TATATGCACAAGAATTAAAAAGTAAAGCTCAACTCAAACTATACTATCAAATTATGAACTATCAGAACTGTTCAATTTTCAACCATGGTACAGATAGTTTTGGTTGACATAACATTGATGGTGTGTGGCCTGAGGCTGAGACAGTTTTTTTTGGGACTCAGCTAATCCTCTTGATCTCTGGCATAGCTGAACACACAATTTTATCTGATGATATCCTTGTAGCTCTCTGTCTAGTATTGCCAGATTTTCCATGGAGAGCTCATACTACATTATAATACACGCTTGTAGCTTTGTTCTTGTGTTTAATTGGGTCTGACATATATGACATTTCTGCTTCTCAGGTGAGGACGAAGCTTGTCAGAAGTTGGCTTCCTGTCCTAAACGTCTGCAGGAACATGGTTCAGCCTATGCAGTGTGGATACAAGTCACCAAATTGCCAAGAGCTAGAGGAGACATTTCTTCAGATCATCTCCACCTTGCCTGTCCCAGAT GCTCAGGAGTTGCT GCAACAGTGCCTCGGGTTCTCGACTCGCAACGTCGACGACTGCCCGCACTTGATCGCAGCCTTCAAGACATGGTTCAGGCGTGCTGGCCGGGCTCCT CAAGGTGCAGAAAATTGAGATGAGCGCTGCAGCTAGTGTCTGCCAA CA GTGGGTGCTGTCTTGTGCGAAATCTCACATCTAGTTCAATGT AGTTCCTAACGCTGT TTCTGTACATTGT TGT ACTACCTACCCT ATCTATTGCCATGTAAGGTATATGATATGTACATAACAACATTTTTCTGTTCGTGTGAAACATGTTACCCAAGTGCAGATGAATGATGCACTAAACTA]
[+] EMBL BI808948 [ atgCCCCCTGGCCTGTCCCAGATGGCTCAGGAGTTGCTGGCAACAGTGCCTCGGGTTTTCGACTCGCAACGTCGACGGCTGCCCGCACTTGATCGCAGCCTTCAAGACCTGGTTCAGGCGTGCTGGCCGGGCTCCTACAAGGTGCAGAAAATTGAGATGAGCGCTGCAGCTAGTGTCTGCCAACCACGTGGGTGCTGTCTTGTGCGAAATCTCACATCTAGTTCAATGTGAGTTCCTAACGCTGTGTTCTGTACCTTGTGTGTGACTACCTACCCTGATCTATTGCCCTGTAAGGTATATGATA ]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_8125#0 GGCCGCCAGGTCGCCCTCCGAGGCGATGCTGCACGGCTTGATCCACTCCGCCATCCATGG 60
consensus_8125#1 GGCCGCCAGGTCGCCCTCCGAGGCGATGCTGCACGGCTTGATCCACTCCGCCATCCATGG 60
consensus_8125#2 ------------------------------------------------------------
consensus_8125#0 GCACCCGGTCCCCGCCGCAACCAAGGCGTTCGTCGCGATGCTCCTCAAGGACTACCCCTC 120
consensus_8125#1 GCACCCGGTCCCCGCCGCAACCAAGGCGTTCGTCGCGATGCTCCTCAAGGACTACCCCTC 120
consensus_8125#2 ------------------------------------------------------------
consensus_8125#0 CCGTGACTGCGTCCAGAAGGTGCTCGACGAGGCGTTCCTGTCACGGCTGGAGACTGTCAA 180
consensus_8125#1 CCGTGACTGCGTCCAGAAGGTGCTCGACGAGGCGTTCCTGTCACGGCTGGAGACTGTCAA 180
consensus_8125#2 -------TATATGCACAAGAATTAAAAAGTAAAGCTCAACTCA-AACT--ATACTATCAA 50
* * ** *** * * * ** *** ** * *** ****
consensus_8125#0 GGAGCTCATGGGGAAGTATGCCAGCCCGGATTTCAGGGTCGCGGTGGACAGCGATGAGCG 240
consensus_8125#1 GGAGCTCATGGGGAAGTATGCCAGCCCGGATTTCAGGGTCGCGGTGGACAGCGATGAGCG 240
consensus_8125#2 A----TTATGAACTATCAGAACTGTTCAATTTTCAA--CCATGGTACAGATAGTTTTGGT 104
* *** * * * * * ***** * *** * * * * *
consensus_8125#0 GGACGCGATACAGAGGCTGAACCTGCAGTCCGCGGTATTGAATGTGAGACACTTGCTCTG 300
consensus_8125#1 GGACGCGATACAGAGGCTGAACCTGCAGTCCGCGGTATTGAATGTGAGACACTTGCTCTG 300
consensus_8125#2 TGACATAACATTGATGGTG----TGTGGCCTGAGGC--------TGAGACAGTTTTTTTT 152
*** * * ** * ** ** * * * ** ******* ** * *
consensus_8125#0 GCTCATCGAGAGGATGGTCGAAATGAGGGTGGCCGGTAATGCGGTTAAGCTGTGGAGTGA 360
consensus_8125#1 GCTCATCGAGAGGATGGTCGAAATGAGGGTGGCCGGTGATGCGGTTAAGCTGTGGAGTGA 360
consensus_8125#2 GGGACTC-AGCTAATCCTCT---------TGATCTCTGGCATAGCTGAACACACAATTTT 202
* ** ** ** ** ** * * * * * * * *
consensus_8125#0 GCAGGCTGCACTGACTGCTGATCTGCAGAAGTTGCTGAATGATGTGGATATGTGGAAGAA 420
consensus_8125#1 GCAGGCTGCACTGACTGCTGATCTGCAGAAGTTGCTGAATGATGTGGATATGTGGAAGAA 420
consensus_8125#2 ATCTGATGATATCCTTGTAGCTCTCTGTCTAGTATTGCCAGATTT---TCCATGGAGAGC 259
* ** * ** * *** * ** *** * * ****
consensus_8125#0 TATTACTCCTGGGCTTCCTGTGCTTGTTACCAGATGCACGCTCAGGTTCGCCAATTCGGT 480
consensus_8125#1 TATTACTCCTGGGCTTCCTGTGCCTGTTACCAGATGCACGCTCAGGTTCGCCAATTCGGT 480
consensus_8125#2 TCATACTAC----ATTATAATACACGCTTGTAGCTTTGTTCTTGTGTTT---AATTGGGT 312
* **** * ** * * * * ** * ** *** **** ***
consensus_8125#0 TGTGAATGGGGAGACAATAGTTCCTCGTCAGGTGAGGACGAAGCTTGTCAGAAGTTGGCT 540
consensus_8125#1 TGTGAATGGGGAGACAATAGTTCCTCGTCAGGTGAGGACGAAGCTTGTCAGAAGTTGGCT 540
consensus_8125#2 C-TGACATATATGACATTTCTGCTTC-TCAGGTGAGGACGAAGCTTGTCAGAAGTTGGCT 370
*** **** * * * ** *********************************
consensus_8125#0 TCCTGTCCTAAACGTCTGCAGGAACATGGTTCAGCCTATGCAGTGTGGATACAAGTCACC 600
consensus_8125#1 TCCTGTCCTAAACGTCTGCAGGAACATGGTTCAGCCTATGCAGTGTGGATACAAGTCACC 600
consensus_8125#2 TCCTGTCCTAAACGTCTGCAGGAACATGGTTCAGCCTATGCAGTGTGGATACAAGTCACC 430
************************************************************
consensus_8125#0 AAATTGCCAAGAGCTAGAGGAGACATTTCTTCAGATCATCTCCACCTTGCCTGTCCCAGA 660
consensus_8125#1 AAATTGCCAAGAGCTAGAGGAGACATTTCTTCAGATCATCTCCACCTTGCCTGTCCCAGA 660
consensus_8125#2 AAATTGCCAAGAGCTAGAGGAGACATTTCTTCAGATCATCTCCACCTTGCCTGTCCCAGA 490
************************************************************
consensus_8125#0 TGCTCAGGAGTTGCTGCAACAGTGCCTCGGGTTCTCGACTCGCAACGTCGACGACTGCCC 720
consensus_8125#1 TGCTCAGGAGTTGCTGCAACAGTGCCTCGGGTTCTCGACTCGCAACGTCGACGACTGCCC 720
consensus_8125#2 TGCTCAGGAGTTGCTGCAACAGTGCCTCGGGTTCTCGACTCGCAACGTCGACGACTGCCC 550
************************************************************
consensus_8125#0 GCACTTGATCGCAGCCTTCAAGACATGGTTCAGGCGTGCTGGCCGGGCTCCTCAAGGTGC 780
consensus_8125#1 GCACTTGATCGCAGCCTTCAAGACATGGTTCAGGCGTGCTGGCCGGGCTCCTCAAGGTGC 780
consensus_8125#2 GCACTTGATCGCAGCCTTCAAGACATGGTTCAGGCGTGCTGGCCGGGCTCCTCAAGGTGC 610
************************************************************
consensus_8125#0 AGAAAATTGAGATGAGCGCTGCAGCTAGTGTCTGCCAACAGTGGGTGCTGTCTTGTGCGA 840
consensus_8125#1 AGAAAATTGAGATGAGCGCTGCAGCTAGTGTCTGCCAACAGTGGGTGCTGTCTTGTGCGA 840
consensus_8125#2 AGAAAATTGAGATGAGCGCTGCAGCTAGTGTCTGCCAACAGTGGGTGCTGTCTTGTGCGA 670
************************************************************
consensus_8125#0 AATCTCACATCTAGTTCAATGTAGTTCCTAACGCTGTTTCTGTACATTGTTGTACTACCT 900
consensus_8125#1 AATCTCACATCTAGTTCAATGTAGTTCCTAACGCTGTTTCTGTACATTGTTGTACTACCT 900
consensus_8125#2 AATCTCACATCTAGTTCAATGTAGTTCCTAACGCTGTTTCTGTACATTGTTGTACTACCT 730
************************************************************
consensus_8125#0 ACCCTATCTATTGCCATGTAAGGTATATGATATGTACATAACAACATTTTTCTGTTCGTG 960
consensus_8125#1 ACCCTATCTATTGCCATGTAAGGTATATGATATGTACATAACAACATTTTTCTGTTCGTG 960
consensus_8125#2 ACCCTATCTATTGCCATGTAAGGTATATGATATGTACATAACAACATTTTTCTGTTCGTG 790
************************************************************
consensus_8125#0 TGAAACATGTTACCCAAGTGCAGATGAATGATGCACTAAACTAACTATTCACGCGTGCAA 1020
consensus_8125#1 TGAAAAAAAAAAAAAAAAAGGCCACAT--------------------------------- 987
consensus_8125#2 TGAAACATGTTACCCAAGTGCAGATGAATGATGCACTAAACTA----------------- 833
***** * * ** * *
consensus_8125#0 TGTTCTTCCCTTCGGAATGTGAATATAACTTGACGACAAAGTGTATATTCAAAAAAAAGA 1080
consensus_8125#1 ------------------------------------------------------------
consensus_8125#2 ------------------------------------------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||