cluster # 8136

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Oryza sativa
cluster # 8136 cluster # 8136 Sequences # 5 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_8136#0 length = 1013 sequences # 1

consensus_8136#1 length = 251 sequences # 4

consensusID : consensus_8136#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 1013
fasta sequence

                              [ACGAGCGGATGAGCCGATAATAATAGACGAGCGCGCGGGCGGCAAATCGATCGGCATCCTAGGATTCTTGGCATGGCGATGGGGAGGAAGAACAAGGCGGCGGAGGGTGCGAGGTGCCGGCGGCACCGGCAGCGTGGCGGCGGCGGCGGCGGCGGCGGCGCGGGGGTCTGCGCGCCCTGCCTGCGGGAGCGCCTGTCCCACCTGATGTCCGCCTCGGCGTCGGCGTCGGTGTCGCTGCCGTCCGTCGTGCGCGGCGAGGAGGAGGAGGCGTCGTCCTGCTGCTCGTCGTCGAGTGAGGCGTCCAGCGACGCTTCATCGTCGGCCGCGTCAGGGTCCAGCAGCCCGTGGGCGGCGCGGTTCCACCGGGAGATGGTGGCGGCCGGCGGCCGCGGCGGCGGGAGGCTGTCGCTTCTGATGAGGAACGAGCGGGTGTTGCTGGACAGCGACGAGGTGGCGAGCGTGGTGAGGCGGATGCGGGAGAGGCGGCGGCAGGCGAGGAGCTTCTGGGCGAAGCTGCTGCACGCGACGGTGGGCGGAGGCGGAGGCAAGAAGGAGGGGTGCTCGATGGCGCACTCCAAGACGCTGGACCAGGAGAGGAGCACCACGGCGGCGGCCAAGTGGATCCTTTTCTGAGGCCGTGCAAATGCATATGCATGCATGCAGCGAAGCGATGATGTCAAGATGATGAGATCGTCAGCGTGCGTCGCTGTAAATTCTTCTTGGCTTTCTAGTTTGGTTGGAACTTGGAAAAGTAGATTTGTTGATGCGGTTTTCTCTTTGGTTGTTTTGGTTCATTTCTTTGTTTGATTTTGGTCTATCCTGTACAGGCCGGTTTGAAGCAAAATGACAGTGATCGACATTCTTTGGTTAGCTCTTGCTGCTGTGTATAGCAAAAAAATGTTTCTGAATATTGTGGCTATTTGTTAACCTGCTTATACATACGACTGTTACGCCTGCACCATTATAGATCATGGACCTGAAGTTAATCATAGCTGATAAGCAAATACCAAAAG]

[+] EMBL AK111266             [ACGAGCGGATGAGCCGATAATAATAGACGAGCGCGCGGGCGGCAAATCGATCGGCATCCTAGGATTCTTGGCATGGCGATGGGGAGGAAGAACAAGGCGGCGGAGGGTGCGAGGTGCCGGCGGCACCGGCAGCGTGGCGGCGGCGGCGGCGGCGGCGGCGCGGGGGTCTGCGCGCCCTGCCTGCGGGAGCGCCTGTCCCACCTGATGTCCGCCTCGGCGTCGGCGTCGGTGTCGCTGCCGTCCGTCGTGCGCGGCGAGGAGGAGGAGGCGTCGTCCTGCTGCTCGTCGTCGAGTGAGGCGTCCAGCGACGCTTCATCGTCGGCCGCGTCAGGGTCCAGCAGCCCGTGGGCGGCGCGGTTCCACCGGGAGATGGTGGCGGCCGGCGGCCGCGGCGGCGGGAGGCTGTCGCTTCTGATGAGGAACGAGCGGGTGTTGCTGGACAGCGACGAGGTGGCGAGCGTGGTGAGGCGGATGCGGGAGAGGCGGCGGCAGGCGAGGAGCTTCTGGGCGAAGCTGCTGCACGCGACGGTGGGCGGAGGCGGAGGCAAGAAGGAGGGGTGCTCGATGGCGCACTCCAAGACGCTGGACCAGGAGAGGAGCACCACGGCGGCGGCCAAGTGGATCCTTTTCTGAGGCCGTGCAAATGCATATGCATGCATGCAGCGAAGCGATGATGTCAAGATGATGAGATCGTCAGCGTGCGTCGCTGTAAATTCTTCTTGGCTTTCTAGTTTGGTTGGAACTTGGAAAAGTAGATTTGTTGATGCGGTTTTCTCTTTGGTTGTTTTGGTTCATTTCTTTGTTTGATTTTGGTCTATCCTGTACAGGCCGGTTTGAAGCAAAATGACAGTGATCGACATTCTTTGGTTAGCTCTTGCTGCTGTGTATAGCAAAAAAATGTTTCTGAATATTGTGGCTATTTGTTAACCTGCTTATACATACGACTGTTACGCCTGCACCATTATAGATCATGGACCTGAAGTTAATCATAGCTGATAAGCAAATACCAAAAG]




>consensus_8136#0
ACGAGCGGATGAGCCGATAATAATAGACGAGCGCGCGGGCGGCAAATCGATCGGCATCCT
AGGATTCTTGGCATGGCGATGGGGAGGAAGAACAAGGCGGCGGAGGGTGCGAGGTGCCGG
CGGCACCGGCAGCGTGGCGGCGGCGGCGGCGGCGGCGGCGCGGGGGTCTGCGCGCCCTGC
CTGCGGGAGCGCCTGTCCCACCTGATGTCCGCCTCGGCGTCGGCGTCGGTGTCGCTGCCG
TCCGTCGTGCGCGGCGAGGAGGAGGAGGCGTCGTCCTGCTGCTCGTCGTCGAGTGAGGCG
TCCAGCGACGCTTCATCGTCGGCCGCGTCAGGGTCCAGCAGCCCGTGGGCGGCGCGGTTC
CACCGGGAGATGGTGGCGGCCGGCGGCCGCGGCGGCGGGAGGCTGTCGCTTCTGATGAGG
AACGAGCGGGTGTTGCTGGACAGCGACGAGGTGGCGAGCGTGGTGAGGCGGATGCGGGAG
AGGCGGCGGCAGGCGAGGAGCTTCTGGGCGAAGCTGCTGCACGCGACGGTGGGCGGAGGC
GGAGGCAAGAAGGAGGGGTGCTCGATGGCGCACTCCAAGACGCTGGACCAGGAGAGGAGC
ACCACGGCGGCGGCCAAGTGGATCCTTTTCTGAGGCCGTGCAAATGCATATGCATGCATG
CAGCGAAGCGATGATGTCAAGATGATGAGATCGTCAGCGTGCGTCGCTGTAAATTCTTCT
TGGCTTTCTAGTTTGGTTGGAACTTGGAAAAGTAGATTTGTTGATGCGGTTTTCTCTTTG
GTTGTTTTGGTTCATTTCTTTGTTTGATTTTGGTCTATCCTGTACAGGCCGGTTTGAAGC
AAAATGACAGTGATCGACATTCTTTGGTTAGCTCTTGCTGCTGTGTATAGCAAAAAAATG
TTTCTGAATATTGTGGCTATTTGTTAACCTGCTTATACATACGACTGTTACGCCTGCACC
ATTATAGATCATGGACCTGAAGTTAATCATAGCTGATAAGCAAATACCAAAAG

consensusID : consensus_8136#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 251
fasta sequence

                              [GTCAAGATGATGAGATCGTCAGCGTGCGTCGCTGTAAATTCTTCTTGGCTTTCTAGTTTGGTTGGAACTTGGAAAAGTAGATTTGTTGATGCGGTTTTCTCTTTGGTTGTTTTGGTTCATTTCTTTGTTTGATTTTGGTCTATCCTGTACAGGCCGGTTTGAAGCAAAATGACAGTGATCGACATTCTTTGGTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]

[+] EMBL AU101748             [GTCAAGATGATGAGATCGTCAGCGTGCGTCGCTGTAAATTCTTCTTGGCTTTCTAGTTTGGTTGGAACTTGGAAAAGTAGATTTGTTGATGCGGTTTTCTCTTTGGTTGTTTTGGTTCATTTCTTTGTTTGATTTTGGTCTATCCTGTACAGGCCGGTTTGAAGCAAAATGACAGTGATCGACATTCTTTGGTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]
[+] EMBL AU070371             [GTCAAGATGATGAGATCGTCAGCGTGCGTCGCTGTAAATTCTTCTTGGCTTTCTAGTTTGGTTGGAACTTGGAAAAGTAGATTTGTTGATGCGGTTTTCTCTTTGGTTGTTTTGGTTCATTTCTTTGTTTGATTTTNGTCTATCCTGTACAGGCCGGTTTGAAGCAAAATGACAGTGATCGACATTCTTTGGTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAANAAAAAAAAAA         ]
[+] EMBL AU162932             [GTCAAGATGATGAGATCGTCAGCGTGCGTCGCTGTAAATTCTTCTTGGCTTTCTAGTTTGGTTGGAACTTGGAAAAGTAGATTTGTTGATGCGGTTTTCTCTTTGGTTGTTTTGGTTCATTTCTTTGTTTGATTTTGGTCTATCCTGTACAGGCCGGTTTGAAGCAAAATGACAGTGATCGACATTCTTTGGTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA                    ]
[+] EMBL AU162895             [GTCAAGATGATGAGATCGTCAGCGTGCGTCGCTGTAAATTCTTCTTGGCTTTCTAGTTTGGTTGGAACTTGGAAAAGTAGATTTGTTGATGCGGTTTTCTCTTTGGTTGTTTTGGTTCATTTCTTTGTTTGATTTTGGTCTATCCTGTACAGGCCGGTTTGAAGCAAAATGACAGTGATCGACATTCTTTGGTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA                         ]




>consensus_8136#1
GTCAAGATGATGAGATCGTCAGCGTGCGTCGCTGTAAATTCTTCTTGGCTTTCTAGTTTG
GTTGGAACTTGGAAAAGTAGATTTGTTGATGCGGTTTTCTCTTTGGTTGTTTTGGTTCAT
TTCTTTGTTTGATTTTGGTCTATCCTGTACAGGCCGGTTTGAAGCAAAATGACAGTGATC
GACATTCTTTGGTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_8136#0      ACGAGCGGATGAGCCGATAATAATAGACGAGCGCGCGGGCGGCAAATCGATCGGCATCCT 60
consensus_8136#1      ------------------------------------------------------------
                                                                                  

consensus_8136#0      AGGATTCTTGGCATGGCGATGGGGAGGAAGAACAAGGCGGCGGAGGGTGCGAGGTGCCGG 120
consensus_8136#1      ------------------------------------------------------------
                                                                                  

consensus_8136#0      CGGCACCGGCAGCGTGGCGGCGGCGGCGGCGGCGGCGGCGCGGGGGTCTGCGCGCCCTGC 180
consensus_8136#1      ------------------------------------------------------------
                                                                                  

consensus_8136#0      CTGCGGGAGCGCCTGTCCCACCTGATGTCCGCCTCGGCGTCGGCGTCGGTGTCGCTGCCG 240
consensus_8136#1      ------------------------------------------------------------
                                                                                  

consensus_8136#0      TCCGTCGTGCGCGGCGAGGAGGAGGAGGCGTCGTCCTGCTGCTCGTCGTCGAGTGAGGCG 300
consensus_8136#1      ------------------------------------------------------------
                                                                                  

consensus_8136#0      TCCAGCGACGCTTCATCGTCGGCCGCGTCAGGGTCCAGCAGCCCGTGGGCGGCGCGGTTC 360
consensus_8136#1      ------------------------------------------------------------
                                                                                  

consensus_8136#0      CACCGGGAGATGGTGGCGGCCGGCGGCCGCGGCGGCGGGAGGCTGTCGCTTCTGATGAGG 420
consensus_8136#1      ------------------------------------------------------------
                                                                                  

consensus_8136#0      AACGAGCGGGTGTTGCTGGACAGCGACGAGGTGGCGAGCGTGGTGAGGCGGATGCGGGAG 480
consensus_8136#1      ------------------------------------------------------------
                                                                                  

consensus_8136#0      AGGCGGCGGCAGGCGAGGAGCTTCTGGGCGAAGCTGCTGCACGCGACGGTGGGCGGAGGC 540
consensus_8136#1      ------------------------------------------------------------
                                                                                  

consensus_8136#0      GGAGGCAAGAAGGAGGGGTGCTCGATGGCGCACTCCAAGACGCTGGACCAGGAGAGGAGC 600
consensus_8136#1      ------------------------------------------------------------
                                                                                  

consensus_8136#0      ACCACGGCGGCGGCCAAGTGGATCCTTTTCTGAGGCCGTGCAAATGCATATGCATGCATG 660
consensus_8136#1      ------------------------------------------------------------
                                                                                  

consensus_8136#0      CAGCGAAGCGATGATGTCAAGATGATGAGATCGTCAGCGTGCGTCGCTGTAAATTCTTCT 720
consensus_8136#1      ---------------GTCAAGATGATGAGATCGTCAGCGTGCGTCGCTGTAAATTCTTCT 45
                                     *********************************************

consensus_8136#0      TGGCTTTCTAGTTTGGTTGGAACTTGGAAAAGTAGATTTGTTGATGCGGTTTTCTCTTTG 780
consensus_8136#1      TGGCTTTCTAGTTTGGTTGGAACTTGGAAAAGTAGATTTGTTGATGCGGTTTTCTCTTTG 105
                      ************************************************************

consensus_8136#0      GTTGTTTTGGTTCATTTCTTTGTTTGATTTTGGTCTATCCTGTACAGGCCGGTTTGAAGC 840
consensus_8136#1      GTTGTTTTGGTTCATTTCTTTGTTTGATTTTGGTCTATCCTGTACAGGCCGGTTTGAAGC 165
                      ************************************************************

consensus_8136#0      AAAATGACAGTGATCGACATTCTTTGGTTAGCTCTTGCTGCTGTGTATAGCAAAAAAATG 900
consensus_8136#1      AAAATGACAGTGATCGACATTCTTTGGTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 225
                      ******************************                * *  *******  

consensus_8136#0      TTTCTGAATATTGTGGCTATTTGTTAACCTGCTTATACATACGACTGTTACGCCTGCACC 960
consensus_8136#1      AAAAAAAAAAAAAAAAAAAAAAAAAA---------------------------------- 251
                            ** *        *      *                                  

consensus_8136#0      ATTATAGATCATGGACCTGAAGTTAATCATAGCTGATAAGCAAATACCAAAAG 1013
consensus_8136#1      -----------------------------------------------------