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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8138#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 1599 fasta sequence
[ACATCCACTCTCGCCAGTCGTCACCTCCTCCTCCTCCCCCCTCCGCTCGCCGCCGATGGATCCGGCCGCCGCCGCGCGGGGGCAGGCGGAGCAGTGGATGCGGGTGGCGGAGAAGCTCCTGGTGGCGCGCGACCTGGAGGGATGCAAGGAGTTCGTCTCCCAGGCGCTCGGCACCGACCCCCACGTCCCGGGCGCCAACGACCTCCTCGCCGCCGCCGACGTCCTCCTCGCCGCGCAGCGCCGCCGCATCCCCAACGGTCATCCAGATCCCTACGCCGTCCTCGGCCTCGATCCCTCCACCCCGGCCTCCCGCCGCCCCGACGCCATCCACGCGCAGTACCGTCGCCTCTCCTTCCTCCTCAATCGCTCCCACCCCGACCGCCCTTGCTCGCTCTCCTTCGCCGAGGCCGCCCGCCTCGTGGCCGATTCATGGGCCTT-CCTCTCCGATCCGATACTTAAATCCGCCCTGGATGCTGAACTCGACGCCGCCGCCGCCGCAGCCGCGGCGGCGGCAGCTCGCGCGTACCATCCTCCAGCTCCGATGCAACAGCCGCAGCCGCAGCCTCCGCCACAGCCAACTCCACCGAGGGCGGCTCCCCTGCCAACTCCACCAAGGGCGCCTCCCCAATCAACTCCACCGAGAGCAGCGCCCCAGTCAACTCCACCGCAGCGGGTGGCTCCACAGCCACCCGCCACTGCAGCGGCGCCGCCGATTGAGCCTGTCGCGCCGCCTTCGCCCACGTTCTGGACAGTGTGCATGTCCTGCTGCCACATTCACCAGTACGACCGCCTCTATGAGGCGCGGAAGGTGTTGTGCCCTAGCTGCCGCCAGCCATTTGTAGCCGAGGAAATGGCGGAGCCACCACCCATTGTGCCGGGTACTGACATGTACTACTGCACCTGGGGGTTCTTCCCTGTTGGTTTTCCTGGCTGTCCTGGCTTCGAGAAACTGATCAGTTCGCAGCAGCATGGAACAGATCAGCCGAATACACCTTGGCTTGGAACCACTGGTGGTGCGGAAGCTGATGGTGTGGCTGGTGCTGAGAATGGGGCGCCGGTTAGTGCTGCCGTGGAGGTGCAATCTGTGCCGAAACCAGCGAAACCCGTGAGAGTGAAGGTGGGCGCGAAGAAGCGAGGCCGTCCCAAAGGCAGCAAGAACAAGAAGAATTTGTGAATGATACCAATGAAGGTGATTGGTATGATCATAGATCAGATGGGTTTGTTGGGTTATTCGTTTGATCCTGCTATCATTGTCATCGACTGAAACGTTTATCTGTAGGTTGAATGCTAATTCGTGGTTGACAGGATCCTACATTGAGAAGCACTGCAATGGTGATAGAAACTTAGTTTTTCAGGCAGTCTTGCTCAGTTGCTGGGTTGTACTACCTTGCTGCTCTCATGCTTTAGATGCAGTTAGCTGCTGTATGTTGTCTAATTTCATTGACTTCAGTTGAGCTAGCTGTTCTGATCTAAGATTATTAGGAGATAGCGATTTTAGTACCGTGCATTGTAAATTTTGAAATTTGATGCTACTATAAGCTCTTCTCTGCATAGGATTGCAGACTTGCAGCAATGAATGAGAGTTTTATTTTCCCAGTC]
[+] EMBL CB643741 [ACATCCACTCTCGCCAGTCGTCACCTCCTCCTCCTCCCCCCTCCGCTCGCCGCCGATGGATCCGGCCGCCGCCGCGCGGGGGCAGGCGGAGCAGTGGATGCGGGTGGCGGAGAAGCTCCTGGTGGCGCGCGACCTGGAGGGATGCAAGGAGTTCGTCTCCCAGGCGCTCGGCACCGACCCCCACGTCCCGGGCGCCAACGACCTCCTCGCCGCCGCCGACGTCCTCCTCGCCGCGCAGCGCCGCCGCATCCCCAACGGTCATCCAGATCCCTACGCCGTCCTCGGCCTCGATCCCTCCACCCCGGCCTCCCGCCGCCCCGACGCCATCCACGCGCAGTACCGTCGCCTCTCCTTCCTCCTCAATCGCTCCCACCCCGACCGCCCTTGCTCGCTCTCCTTCGCCGAGGCCGCCCGCCTCGTGGCCGATTCATGGGCCTT CCTCTCCGATCCGATACTTAAATCCGCCCTGGATGCTGAACTCGACGCCGCCGCCGCCGCAGCCGCGGCGGCGGCAGCTCGCGCGTACCATCCTCCAGCTCCGATGCAACAGCCGCAGCCGCAGCCTCCGCCACAGCCAACTCCACCGAGGGCGGCTCCCCTGCCAACTCCACCAAGGGCGCCTCCCCAATCAACTCCACCGAGAGCAGCGCCCCAGTCAACTCCACC ]
[+] EMBL AK060708 [ AGTCGTCACCTCCTCCTCCTCCCCCCTCCGCTCGCCGCCGATGGATCCGGCCGCCGCCGCGCGGGGGCAGGCGGAGCAGTGGATGCGGGTGGCGGAGAAGCTCCTGGTGGCGCGCGACCTGGAGGGATGCAAGGAGTTCGTCTCCCAGGCGCTCGGCACCGACCCCCACGTCCCGGGCGCCAACGACCTCCTCGCCGCCGCCGACGTCCTCCTCGCCGCGCAGCGCCGCCGCATCCCCAACGGTCATCCAGATCCCTACGCCGTCCTCGGCCTCGATCCCTCCACCCCGGCCTCCCGCCGCCCCGACGCCATCCACGCGCAGTACCGTCGCCTCTCCTTCCTCCTCAATCGCTCCCACCCCGACCGCCCTTGCTCGCTCTCCTTCGCCGAGGCCGCCCGCCTCGTGGCCGATTCATGGGCCTT CCTCTCCGATCCGATACTTAAATCCGCCCTGGATGCTGAACTCGACGCCGCCGCCGCCGCAGCCGCGGCGGCGGCAGCTCGCGCGTACCATCCTCCAGCTCCGATGCAACAGCCGCAGCCGCAGCCTCCGCCACAGCCAACTCCACCGAGGGCGGCTCCCCTGCCAACTCCACCAAGGGCGCCTCCCCAATCAACTCCACCGAGAGCAGCGCCCCAGTCAACTCCACCGCAGCGGGTGGCTCCACAGCCACCCGCCACTGCAGCGGCGCCGCCGATTGAGCCTGTCGCGCCGCCTTCGCCCACGTTCTGGACAGTGTGCATGTCCTGCTGCCACATTCACCAGTACGACCGCCTCTATGAGGCGCGGAAGGTGTTGTGCCCTAGCTGCCGCCAGCCATTTGTAGCCGAGGAAATGGCGGAGCCACCACCCATTGTGCCGGGTACTGACATGTACTACTGCACCTGGGGGTTCTTCCCTGTTGGTTTTCCTGGCTGTCCTGGCTTCGAGAAACTGATCAGTTCGCAGCAGCATGGAACAGATCAGCCGAATACACCTTGGCTTGGAACCACTGGTGGTGCGGAAGCTGATGGTGTGGCTGGTGCTGAGAATGGGGCGCCGGTTAGTGCTGCCGTGGAGGTGCAATCTGTGCCGAAACCAGCGAAACCCGTGAGAGTGAAGGTGGGCGCGAAGAAGCGAGGCCGTCCCAAAGGCAGCAAGAACAAGAAGAATTTGTGAATGATACCAATGAAGGTGATTGGTATGATCATAGATCAGATGGGTTTGTTGGGTTATTCGTTTGATCCTGCTATCATTGTCATCGACTGAAACGTTTATCTGTAGGTTGAATGCTAATTCGTGGTTGACAGGATCCTACATTGAGAAGCACTGCAATGGTGATAGAAACTTAGTTTTTCAGGCAGTCTTGCTCAGTTGCTGGGTTGTACTACCTTGCTGCTCTCATGCTTTAGATGCAGTTAGCTGCTGTATGTTGTCTAATTTCATTGACTTCAGTTGAGCTAGCTGTTCTGATCTAAGATTATTAGGAGATAGCGATTTTAGTACCGTGCATTGTAAATTTTGAAATTTGATGCTACTATAAGCTCTTCTCTGCATAGGATTGCAGACTTGCAGCAATGAATGAGAGTTTTATTTTCCCAGTC]
[+] EMBL CB657456 [ AGATCCCTACGCCGTCCTCGGCCTCGATCCCTCCACCCCGGCCTCCCGCCGCCCCGACGCCATCCACGCGCAGTACCGTCGCCTCTCCTTCCTCCTCAATCGCTCCCACCCCGACCGCCCTTGCTCGCTCTCCTTCGCCGAGGCCGCCCGCCTCGTGGCCGATTCATGGGCCTTACCTCTCCGATCCGATACTTAAATCCGCCCTGGATGCTGAACTCGACGCCGCCGCCGCCGCAGCCGCGGCGGCGGCAGCTCGCGCGTACCATCCTCCAGCTCCGATGCAACAGCCGCAGCCGCAGCCTCCGCCACAGCCAACTCCACCGAGGGCGGCTCCCCTGCCAACTCCACCAAGGGCGCCTCCCCAATCAACTCCACCGAGAGCAGCGCCCCAGTCAACTCCACCGCAGCGGGTGGATCCACAGCCACCCagct ]
[-] EMBL CB657457 [ AGGTGTTGTGCCCTAGCTGCCGCCAGCCATTTGTAGCCGAGGAAATGGCGGAGCCACCACCCATTGTGCCGGGTACTGACATGTACTACTGCACCTGGGGGTTCTTCCCTGTTGGTTTTCCTGGCTGTCCTGGCTTCGAGAAACTGATCAGTTCGCAGCAGCATGGAACAGATCAGCCGAATACACCTTGGCTTGGAACCACTGGTGGTGCGGAAGCTGATGGTGTGGCTGGTGCTGAGAATGGGGCGCCGGTTAGTGCTGCCGTGGAGGTGCAATCTGTGCCGAAACCAGCGAAACCCGTGAGAGTGAAGGTGGGCGCGAAGAAGCGAGGCCGTCCCAAAGGCAGCAAGAACAAGAAGAATTTGTGAATGATACCAATGAAGGTGATTGGTATGATCATAGATCAGATGGGTTTGTTGGGTTATTCGTTTGATCCTGCTATCATTGTCATCGACTGAAACGTTTATCTGTAGGTTGAATGCTAATTCGTGGTTGACAGGATCCTACATTGAGAAGCACTGCAATGGTGATAGAAACTTAGTTTTTCAGGCAGTCTTGCTCAGTTGCTGGGTTGTACTACCTTGCTGCTCTCATGCTTTAGATGCAGTTAGCTGCTGTATGTTGTCTAATTTCATTGACTTCAGTTGAGCTAGCTGTTCTGATCTAAGATTATTAGGAGATAGCGATTTTAGTACCGTGCATTGTAAATTTTGAAATTTGATGCTACTATAAGCTCTTCTCTGCATAGGATTGCAGACTTGCAGCAATGAATG ]
consensusID : consensus_8138#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 462 fasta sequence
[CCGGTTAGTGCTCCCGGGGGGGGGCAATTTGTGCCGAAACCAGGGAAACCCCTGAGAGTAAAGGGGGGCGCGAAAAAGGGAGGCCTTCCCAAAGGCCGCAAGACCAAGAAGAATTTGGGAATGATCCCAATGAAGGGGATTGGTATGATCATAGATCAGAGGGGTTTGTGGGGTTATTCGTTTGACCCCGCTATCATTGTCATCGACGGAAACGTTTTTTTGTAGGGGGAATGTTAATTCGGGGTTGCCGGGATCCCCCCTTGAGAAGCCCTCCAATGGGGATAGAAACTTAGTTTTTCAGGCAGTTTTGCCCAGTTGGGGGGTTGTACTCCCTTGCTGCTTTCATGCTTTAGATGCAGTTAGCTGCTGTATGTTTTTTAATTTCATTGACTTCAGTTGGGCTAGCTGTTTTGTTTTAAGATTTTTGGGGGATAGGGATTTTAGTCCCGGCCCTTGTAAATT]
[-] EMBL CB643742 [CCGGTTAGTGCTCCCGGGGGGGGGCAATTTGTGCCGAAACCAGGGAAACCCCTGAGAGTAAAGGGGGGCGCGAAAAAGGGAGGCCTTCCCAAAGGCCGCAAGACCAAGAAGAATTTGGGAATGATCCCAATGAAGGGGATTGGTATGATCATAGATCAGAGGGGTTTGTGGGGTTATTCGTTTGACCCCGCTATCATTGTCATCGACGGAAACGTTTTTTTGTAGGGGGAATGTTAATTCGGGGTTGCCGGGATCCCCCCTTGAGAAGCCCTCCAATGGGGATAGAAACTTAGTTTTTCAGGCAGTTTTGCCCAGTTGGGGGGTTGTACTCCCTTGCTGCTTTCATGCTTTAGATGCAGTTAGCTGCTGTATGTTTTTTAATTTCATTGACTTCAGTTGGGCTAGCTGTTTTGTTTTAAGATTTTTGGGGGATAGGGATTTTAGTCCCGGCCCTTGTAAATT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_8138#0 ACATCCACTCTCGCCAGTCGTCACCTCCTCCTCCTCCCCCCTCCGCTCGCCGCCGATGGA 60
consensus_8138#1 ------------------------------------------------------------
consensus_8138#0 TCCGGCCGCCGCCGCGCGGGGGCAGGCGGAGCAGTGGATGCGGGTGGCGGAGAAGCTCCT 120
consensus_8138#1 ------------------------------------------------------------
consensus_8138#0 GGTGGCGCGCGACCTGGAGGGATGCAAGGAGTTCGTCTCCCAGGCGCTCGGCACCGACCC 180
consensus_8138#1 ------------------------------------------------------------
consensus_8138#0 CCACGTCCCGGGCGCCAACGACCTCCTCGCCGCCGCCGACGTCCTCCTCGCCGCGCAGCG 240
consensus_8138#1 ------------------------------------------------------------
consensus_8138#0 CCGCCGCATCCCCAACGGTCATCCAGATCCCTACGCCGTCCTCGGCCTCGATCCCTCCAC 300
consensus_8138#1 ------------------------------------------------------------
consensus_8138#0 CCCGGCCTCCCGCCGCCCCGACGCCATCCACGCGCAGTACCGTCGCCTCTCCTTCCTCCT 360
consensus_8138#1 ------------------------------------------------------------
consensus_8138#0 CAATCGCTCCCACCCCGACCGCCCTTGCTCGCTCTCCTTCGCCGAGGCCGCCCGCCTCGT 420
consensus_8138#1 ------------------------------------------------------------
consensus_8138#0 GGCCGATTCATGGGCCTTCCTCTCCGATCCGATACTTAAATCCGCCCTGGATGCTGAACT 480
consensus_8138#1 ------------------------------------------------------------
consensus_8138#0 CGACGCCGCCGCCGCCGCAGCCGCGGCGGCGGCAGCTCGCGCGTACCATCCTCCAGCTCC 540
consensus_8138#1 ------------------------------------------------------------
consensus_8138#0 GATGCAACAGCCGCAGCCGCAGCCTCCGCCACAGCCAACTCCACCGAGGGCGGCTCCCCT 600
consensus_8138#1 ------------------------------------------------------------
consensus_8138#0 GCCAACTCCACCAAGGGCGCCTCCCCAATCAACTCCACCGAGAGCAGCGCCCCAGTCAAC 660
consensus_8138#1 ------------------------------------------------------------
consensus_8138#0 TCCACCGCAGCGGGTGGCTCCACAGCCACCCGCCACTGCAGCGGCGCCGCCGATTGAGCC 720
consensus_8138#1 ------------------------------------------------------------
consensus_8138#0 TGTCGCGCCGCCTTCGCCCACGTTCTGGACAGTGTGCATGTCCTGCTGCCACATTCACCA 780
consensus_8138#1 ------------------------------------------------------------
consensus_8138#0 GTACGACCGCCTCTATGAGGCGCGGAAGGTGTTGTGCCCTAGCTGCCGCCAGCCATTTGT 840
consensus_8138#1 ------------------------------------------------------------
consensus_8138#0 AGCCGAGGAAATGGCGGAGCCACCACCCATTGTGCCGGGTACTGACATGTACTACTGCAC 900
consensus_8138#1 ------------------------------------------------------------
consensus_8138#0 CTGGGGGTTCTTCCCTGTTGGTTTTCCTGGCTGTCCTGGCTTCGAGAAACTGATCAGTTC 960
consensus_8138#1 ------------------------------------------------------------
consensus_8138#0 GCAGCAGCATGGAACAGATCAGCCGAATACACCTTGGCTTGGAACCACTGGTGGTGCGGA 1020
consensus_8138#1 ------------------------------------------------------------
consensus_8138#0 AGCTGATGGTGTGGCTGGTGCTGAGAATGGGGCGCCGGTTAGTGCTGCCGTGGAGGTGCA 1080
consensus_8138#1 ----------------------------------CCGGTTAGTGCTCCCGGGGGGGGGCA 26
************ *** ** ** ***
consensus_8138#0 ATCTGTGCCGAAACCAGCGAAACCCGTGAGAGTGAAGGTGGGCGCGAAGAAGCGAGGCCG 1140
consensus_8138#1 ATTTGTGCCGAAACCAGGGAAACCCCTGAGAGTAAAGGGGGGCGCGAAAAAGGGAGGCCT 86
** ************** ******* ******* **** ********* *** ******
consensus_8138#0 TCCCAAAGGCAGCAAGAACAAGAAGAATTTGTGAATGATACCAATGAAGGTGATTGGTAT 1200
consensus_8138#1 TCCCAAAGGCCGCAAGACCAAGAAGAATTTGGGAATGATCCCAATGAAGGGGATTGGTAT 146
********** ****** ************* ******* ********** *********
consensus_8138#0 GATCATAGATCAGATGGGTTTGTTGGGTTATTCGTTTGATCCTGCTATCATTGTCATCGA 1260
consensus_8138#1 GATCATAGATCAGAGGGGTTTGTGGGGTTATTCGTTTGACCCCGCTATCATTGTCATCGA 206
************** ******** *************** ** *****************
consensus_8138#0 CTGAAACGTTTATCTGTAGGTTGAATGCTAATTCGTGGTTGACAGGATCCTACATTGAGA 1320
consensus_8138#1 CGGAAACGTTTTTTTGTAGGGGGAATGTTAATTCGGGGTTGCCGGGATCCCCCCTTGAGA 266
* ********* * ****** ***** ******* ***** * ****** * ******
consensus_8138#0 AGCACTGCAATGGTGATAGAAACTTAGTTTTTCAGGCAGTCTTGCTCAGTTGCTGGGTTG 1380
consensus_8138#1 AGCCCTCCAATGGGGATAGAAACTTAGTTTTTCAGGCAGTTTTGCCCAGTTGGGGGGTTG 326
*** ** ****** ************************** **** ****** ******
consensus_8138#0 TACTACCTTGCTGCTCTCATGCTTTAGATGCAGTTAGCTGCTGTATGTTGTCTAATTTCA 1440
consensus_8138#1 TACTCCCTTGCTGCTTTCATGCTTTAGATGCAGTTAGCTGCTGTATGTTTTTTAATTTCA 386
**** ********** ********************************* * ********
consensus_8138#0 TTGACTTCAGTTGAGCTAGCTGTTCTGATCTAAGATTATTAGGAGATAGCGATTTTAGTA 1500
consensus_8138#1 TTGACTTCAGTTGGGCTAGCTGTTTTGTTTTAAGATTTTTGGGGGATAGGGATTTTAGTC 446
************* ********** ** * ******* ** ** ***** *********
consensus_8138#0 CCGTGCATTGTAAATTTTGAAATTTGATGCTACTATAAGCTCTTCTCTGCATAGGATTGC 1560
consensus_8138#1 CCGGCCCTTGTAAATT-------------------------------------------- 462
*** * *********
consensus_8138#0 AGACTTGCAGCAATGAATGAGAGTTTTATTTTCCCAGTC 1599
consensus_8138#1 ---------------------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||