cluster # 8139

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Oryza sativa
cluster # 8139 cluster # 8139 Sequences # 5 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_8139#0 length = 902 sequences # 4

consensus_8139#1 length = 368 sequences # 1

consensusID : consensus_8139#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 902
fasta sequence

                              [GAACAAGTTTAGTGCAATGTGTCACTAGCTAGCTAGGTCATATTGTTGGATAGTGGCTAGCTTAGCTAGGTCGTGTGTGTTGTGAACTTGTGCTGTCTCGCTAATGTTGTTGGCGTAGTGAGTGCAGTGATCGGAGGTGGTGTTGGTGGAGGCGGCGAGGATGAGCAGGAACAACGGCAAGANTTCCAAGCTGGAGTGCCTGA-GNTGATGAGCCTGTCGAGGGCGCGTGGCGGCGGCGGCGGCGGGCCGTCGGCGACTGTGCGCCCGGGCGGCGACAGCGGC-GGCGTCAACGGCGCGAACACGTCGCC-GCGC-AGGCTGTCGTCCTCGTCGTCGT-CCACCGCGTCGCCGCCGAGCTCGTGCGTGTCGTCGGAGGGCAGCCCGGACGCGGCGGGCGGCGGCGCGGGGCCGCCCATGGTGCTGGCTGGGTGCCCCCGGTGCATGATGTACGTGATGCTGTCCCGGGAGGATCCCCGGTGCCCCCGGTGCCACAGCGCCGTGCTGCTCGACTTCAACGACGACGACCAGCGCCGCCCGCGCCAACGCCGGTGATCCGATCGGCGAGGCTAGCTAGCTGGTGCAACAGCCGGGGGCTCAGTTCTTGCGTTTAGTTCTTCTTCGTCGTCACCGTCGCCGTCGTAGCTTTAATTTAATTACCATCATTCATGATCGATCAGAGTTTACGTGGATCCCGAAAGGAATTATTTCATAGACCTGTTTCTTGCGTGCGGTGCACCCTGTCAAACGGAATTGGTCTAGGTAATAATTTCGCGTTTCAGTAGTATTTCCTGTTCTAGTGTTCAGCTGAGAGCTACGTGCAACAGTGCAAAGACTTTAAGTTTATCATGTCATCAACATTTAAATCATTTAATGGAAGTAATGCTCTTGTCCTGTCAAAAAAAAAA]

[+] EMBL OS1321865            [GAACAAGTTTAGTGCAATGTGTCACTAGCTAGCTAGGTCATATTGTTGGATAGTGGCTAGCTTAGCTAGGTCGTGTGTGTTGTGAACTTGTGCTGTCTCGCTAATGTTGTTGGCGTAGTGAGTGCAGTGATCGGAGGTGGTGTTGGTGGAGGCGGCGAGGATGAGCAGGAACAACGGCAAGANTTCCAAGCTGGAGTGCCTGA GNTGATGAGCCT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   ]
[+] EMBL AK111023             [                                                                                                                             AGTGATCGGAGGTGGTGTTGGTGGAGGCGGCGAGGATGAGCAGGAACAACGGCAAGAGTTCCAAGCTGGAGTGCCTGAGGCTGATGAGCCTGTCGAGGGCGCGTGGCGGCGGCGGCGGCGGGCCGTCGGCGACTGTGCGCCCGGGCGGCGACAGCGGC GGCGTCAACGGCGCGAACACGTCGCC GCGC AGGCTGTCGTCCTCGTCGTCGT CCACCGCGTCGCCGCCGAGCTCGTGCGTGTCGTCGGAGGGCAGCCCGGACGCGGCGGGCGGCGGCGCGGGGCCGCCCATGGTGCTGGCTGGGTGCCCCCGGTGCATGATGTACGTGATGCTGTCCCGGGAGGATCCCCGGTGCCCCCGGTGCCACAGCGCCGTGCTGCTCGACTTCAACGACGACGACCAGCGCCGCCCGCGCCAACGCCGGTGATCCGATCGGCGAGGCTAGCTAGCTGGTGCAACAGCCGGGGGCTCAGTTCTTGCGTTTAGTTCTTCTTCGTCGTCACCGTCGCCGTCGTAGCTTTAATTTAATTACCATCATTCATGATCGATCAGAGTTTACGTGGATCCCGAAAGGAATTATTTCATAGACCTGTTTCTTGCGTGCGGTGCACCCTGTCAAACGGAATTGGTCTAGGTAATAATTTCGCGTTTCAGTAGTATTTCCTGTTCTAGTGTTCAGCTGAGAGCTACGTGCAACAGTGCAAAGACTTTAAGTTTATCATGTCATCAACATTTAAATCATTTAATGGAAGTAATGCTC                    ]
[+] EMBL AU082992             [                                                                                                                                                                                                                                                                      gGCCCGGACGGCGACAGCGACGGGCGTCAACGGCGCGAACACGTCGCCGGCGCAAGGCTGTCGTCCTNGTCGTCGTCCCACCGCGTCGCCGCCGAGCTCGTGCGTGTCGTCGGAGGGCAGCCCGGACGCGGCGGGCGACGGCGCGGGGCCGCCCATGGTGCTGGCTGGGTGCCCCCGGTGCATGATGTACGTGATGCTGTCCCGGGAGGATCCCCGGTGCCCCCGGTGCCACAGCGCCGTGCTGCTCGACTTCAACGACGACGACCAGCGCCGCCCGCGCCAACGCCGGTGATCCGATCGGCGAGGCTAGCTAGCTGGTGCAACAGCCGGGGGCTCAGTTCTTGCGTTTAGTTCTTCTTCGTCGTCACCGTCGCCGTCGTAGCTTTAATTTAATTACCATCATTCATGATCGATCAGAGTTTACGTGGATCCCGAAAGGAATTATTTCATAGACCTGTTTCTTGCGTGCGGTGCACCCTGTCAAACGGAATTGGTCTAGGTAATAATTTCGCGTTTCAGTAGTATTTCCTGTTCTAGTGTTCAGCTGAGAGCTACGTGCAACAGTGCAAAGACTTTAAGTTTATCATGTCATCAACATTT AATCATTTAATGGAAGTAATGCTCTTGTCCTGTCAAAAAAAAAA]
[+] EMBL AU174397             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    AGGATCCCCGGTGCCCCCGGTGCCACAGCGCCGTGCTGCTCGACTTCAACGACGACGACCAGCGCCGCCCGCGCCAACGCCGGTGATCCGATCGGCGAGGCTAGCTAGCTGGTGCAACAGCCGGGGGCTCAGTTCTTGCGTTTAGTTNTTNTTCGTCGTCACCGTCGCCGTCGTAGCTTTAATTTAATTACCATCATTCATGATCGATCAGAGTTTACGTGGATCCCGAAAGGAATTATTTCATAGACCTGTTTNTTGCGTGCGGTGCACCCTGTCAAACGGAATTGGTCTAGGTAATAATTTCGCGTTTCAGTAGTATTTCCTGTTCTAGTGTTCAGCTGAGAGCTACGTGCAACAGTGCAAAGACTTTAAGTTTATCATGTCATCAACATTTAAATCATTTAATGGAAGTAATGCTCTTGTCCTGTCAAAAA     ]




>consensus_8139#0
GAACAAGTTTAGTGCAATGTGTCACTAGCTAGCTAGGTCATATTGTTGGATAGTGGCTAG
CTTAGCTAGGTCGTGTGTGTTGTGAACTTGTGCTGTCTCGCTAATGTTGTTGGCGTAGTG
AGTGCAGTGATCGGAGGTGGTGTTGGTGGAGGCGGCGAGGATGAGCAGGAACAACGGCAA
GANTTCCAAGCTGGAGTGCCTGAGNTGATGAGCCTGTCGAGGGCGCGTGGCGGCGGCGGC
GGCGGGCCGTCGGCGACTGTGCGCCCGGGCGGCGACAGCGGCGGCGTCAACGGCGCGAAC
ACGTCGCCGCGCAGGCTGTCGTCCTCGTCGTCGTCCACCGCGTCGCCGCCGAGCTCGTGC
GTGTCGTCGGAGGGCAGCCCGGACGCGGCGGGCGGCGGCGCGGGGCCGCCCATGGTGCTG
GCTGGGTGCCCCCGGTGCATGATGTACGTGATGCTGTCCCGGGAGGATCCCCGGTGCCCC
CGGTGCCACAGCGCCGTGCTGCTCGACTTCAACGACGACGACCAGCGCCGCCCGCGCCAA
CGCCGGTGATCCGATCGGCGAGGCTAGCTAGCTGGTGCAACAGCCGGGGGCTCAGTTCTT
GCGTTTAGTTCTTCTTCGTCGTCACCGTCGCCGTCGTAGCTTTAATTTAATTACCATCAT
TCATGATCGATCAGAGTTTACGTGGATCCCGAAAGGAATTATTTCATAGACCTGTTTCTT
GCGTGCGGTGCACCCTGTCAAACGGAATTGGTCTAGGTAATAATTTCGCGTTTCAGTAGT
ATTTCCTGTTCTAGTGTTCAGCTGAGAGCTACGTGCAACAGTGCAAAGACTTTAAGTTTA
TCATGTCATCAACATTTAAATCATTTAATGGAAGTAATGCTCTTGTCCTGTCAAAAAAAA
AA

consensusID : consensus_8139#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 368
fasta sequence

                              [ACCAACACGTCGAACTGCTCCCTATATTAGAATCCGAGTGATCGGAGGTGGTGTTGGTGGAGGCGGCGAGGATGAGCAGGAACAACGGCAAGAGTTCCAAGCTGGAGTGCCTGAGGCTGATGAGCCTGTCGAGGGCGCGTNGCGGCGGCGGCGGCGGGCCGTCGGCGACTGTNCGCCCGGGCGGCGACACGGCGGCGTCAACGGCGCGAACACGTNGCCGCGCAGGCTGTCGTCCTCGTCGTCGTCCACNGCGTCGCCGCCGAGCTCGTGCGTTTNGTCGGAGGGCAGCNCGGACGCGGCGGGCNGCGGCGCGGGGNCNCCAATGGTGCTGGCTTGGTGCCCCGGTGCATGATGTACGTAATGCTGTT]

[+] EMBL C74200               [ACCAACACGTCGAACTGCTCCCTATATTAGAATCCGAGTGATCGGAGGTGGTGTTGGTGGAGGCGGCGAGGATGAGCAGGAACAACGGCAAGAGTTCCAAGCTGGAGTGCCTGAGGCTGATGAGCCTGTCGAGGGCGCGTNGCGGCGGCGGCGGCGGGCCGTCGGCGACTGTNCGCCCGGGCGGCGACACGGCGGCGTCAACGGCGCGAACACGTNGCCGCGCAGGCTGTCGTCCTCGTCGTCGTCCACNGCGTCGCCGCCGAGCTCGTGCGTTTNGTCGGAGGGCAGCNCGGACGCGGCGGGCNGCGGCGCGGGGNCNCCAATGGTGCTGGCTTGGTGCCCCGGTGCATGATGTACGTAATGCTGTT]




>consensus_8139#1
ACCAACACGTCGAACTGCTCCCTATATTAGAATCCGAGTGATCGGAGGTGGTGTTGGTGG
AGGCGGCGAGGATGAGCAGGAACAACGGCAAGAGTTCCAAGCTGGAGTGCCTGAGGCTGA
TGAGCCTGTCGAGGGCGCGTNGCGGCGGCGGCGGCGGGCCGTCGGCGACTGTNCGCCCGG
GCGGCGACACGGCGGCGTCAACGGCGCGAACACGTNGCCGCGCAGGCTGTCGTCCTCGTC
GTCGTCCACNGCGTCGCCGCCGAGCTCGTGCGTTTNGTCGGAGGGCAGCNCGGACGCGGC
GGGCNGCGGCGCGGGGNCNCCAATGGTGCTGGCTTGGTGCCCCGGTGCATGATGTACGTA
ATGCTGTT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_8139#0      GAACAAGTTTAGTGCAATGTGTCACTAGCTAGCTAGGTCATATTGTTGGATAGTGGCTAG 60
consensus_8139#1      ------------------------------------------------------------
                                                                                  

consensus_8139#0      CTTAGCTAGGTCGTGTGTGTTGTGAACTTGTGCTGTCTCGCTAA--TGTTGTTGGCGTAG 118
consensus_8139#1      -------------------------------ACCAACACGTCGAACTGCTCCCTATATTA 29
                                                      *   * **   *  ** *       *  

consensus_8139#0      TGAGTGCAGTGATCGGAGGTGGTGTTGGTGGAGGCGGCGAGGATGAGCAGGAACAACGGC 178
consensus_8139#1      GAATCCGAGTGATCGGAGGTGGTGTTGGTGGAGGCGGCGAGGATGAGCAGGAACAACGGC 89
                        *    *****************************************************

consensus_8139#0      AAGANTTCCAAGCTGGAGTGCCTGAGN-TGATGAGCCTGTCGAGGGCGCGTGGCGGCGGC 237
consensus_8139#1      AAGAGTTCCAAGCTGGAGTGCCTGAGGCTGATGAGCCTGTCGAGGGCGCGTNGCGGCGGC 149
                      **** *********************  *********************** ********

consensus_8139#0      GGCGGCGGGCCGTCGGCGACTGTGCGCCCGGGCGGCGACAGCGGCGGCGTCAACGGCGCG 297
consensus_8139#1      GGCGGCGGGCCGTCGGCGACTGTNCGCCCGGGCGGCGACA-CGGCGGCGTCAACGGCGCG 208
                      *********************** **************** *******************

consensus_8139#0      AACACGTCGCCGCGCAGGCTGTCGTCCTCGTCGTCGTCCACCGCGTCGCCGCCGAGCTCG 357
consensus_8139#1      AACACGTNGCCGCGCAGGCTGTCGTCCTCGTCGTCGTCCACNGCGTCGCCGCCGAGCTCG 268
                      ******* ********************************* ******************

consensus_8139#0      TGCGTGTCGTCGGAGGGCAGCCCGGACGCGGCGGGCGGCGGCGCGGGGCCGCCCATGGTG 417
consensus_8139#1      TGCGTTTNGTCGGAGGGCAGCNCGGACGCGGCGGGCNGCGGCGCGGGGNCNCCAATGGTG 328
                      ***** * ************* ************** *********** * ** ******

consensus_8139#0      CTGGCTGGGTGCCCCCGGTGCATGATGTACGTGATGCTGTCCCGGGAGGATCCCCGGTGC 477
consensus_8139#1      CTGGCTTGGTGCCCC-GGTGCATGATGTACGTAATGCTGTT------------------- 368
                      ****** ******** **************** *******                    

consensus_8139#0      CCCCGGTGCCACAGCGCCGTGCTGCTCGACTTCAACGACGACGACCAGCGCCGCCCGCGC 537
consensus_8139#1      ------------------------------------------------------------
                                                                                  

consensus_8139#0      CAACGCCGGTGATCCGATCGGCGAGGCTAGCTAGCTGGTGCAACAGCCGGGGGCTCAGTT 597
consensus_8139#1      ------------------------------------------------------------
                                                                                  

consensus_8139#0      CTTGCGTTTAGTTCTTCTTCGTCGTCACCGTCGCCGTCGTAGCTTTAATTTAATTACCAT 657
consensus_8139#1      ------------------------------------------------------------
                                                                                  

consensus_8139#0      CATTCATGATCGATCAGAGTTTACGTGGATCCCGAAAGGAATTATTTCATAGACCTGTTT 717
consensus_8139#1      ------------------------------------------------------------
                                                                                  

consensus_8139#0      CTTGCGTGCGGTGCACCCTGTCAAACGGAATTGGTCTAGGTAATAATTTCGCGTTTCAGT 777
consensus_8139#1      ------------------------------------------------------------
                                                                                  

consensus_8139#0      AGTATTTCCTGTTCTAGTGTTCAGCTGAGAGCTACGTGCAACAGTGCAAAGACTTTAAGT 837
consensus_8139#1      ------------------------------------------------------------
                                                                                  

consensus_8139#0      TTATCATGTCATCAACATTTAAATCATTTAATGGAAGTAATGCTCTTGTCCTGTCAAAAA 897
consensus_8139#1      ------------------------------------------------------------
                                                                                  

consensus_8139#0      AAAAA 902
consensus_8139#1      -----