cluster # 8144

These datas are free for academic use only, please contact me for any other use.

Oryza sativa
cluster # 8144 cluster # 8144 Sequences # 5 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_8144#0 length = 1953 sequences # 1

consensus_8144#1 length = 705 sequences # 3
consensus_8144#2 length = 695 sequences # 1

consensusID : consensus_8144#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 1953
fasta sequence

                              [CTCCATCTTCGGCCAGCATAGCTCCTGCCTGGCCACCCCCAGGTTTGCTCTCGCGGCTCTTCCCTCACCGGTGCGCCGCACCGTCCACCGCCCGCCGGAGTCGCCGTCGTCGCCGCCGAGAAGAGGGACGCAGCTGCCGTGCGCGGCCGAGTGGATGTGGTGTGAGGCGGTGAGGTGGAGGGAACACGGGGAGCTGGGCGCACGGCGCTTCGAGACCGCCGCCCGGGCGCGCCGCACCGCCTCGCTCGCGCTCTCCAACCGCAAGGAGTTCACCACCCCGCACAACGGCGCCATCAACTCCCTCCAGAGCGGCGGTACCTACTCGCTGGCGCATCGGATGGATCAGCCGCTATATTCGATGTGCAGAATGCAACCGAATACGAAGCCGGGTTCATTGCCAAGCACAGGAGCATTCTGCTTGTGGACAAGCAGCATGAAAATGGCCACAAGTTCGTGGTATCGATGGCCGTATGGTATCCTGTGGACACTGGGCTGTTCGTGACAGCTTCTTTTGATCAGTATGTCAAAGTGTGGGATACTAATTCGACTCAAGTCGTAATGGATTTTAAGATGCCTGGAAAAGTGTATAGCGCAGCAATGTCCCCAATTGCAACAACACATATGCTGATCGCTACTGGAAGTGCGGATGTTCAGGTCCATTTATGTGACATTGCTTCTGGAGCCTTTACCCACACGTTGTCCGGTCATCGTGATGGTATCATGTCTTTGGAGTGGTCTACTTCAAGTGAGTGGATTTTGATGAGCGGTGGTTGTGATGGAGCAATACGATTTTGGGACATAAGACGAGCTGGATGCTTTCTTGTTCTTGATCAGTCACGGTCTCAACTAGGAAGGCGGCCTCCTTTTCTTGAGGGCACCTCAGATAAGATATGGTCACCATTATCCATCACTTACATTTGTTTTCAGAATATTTGGTTGCAATGCTAAAGCTGGACTTCCACTATTATTTTCTGCAAAAGCTTCAAAAATGTTACAGCTTCAAGTAAAAAATTATGGCTGTAATGCTAGATCAATACAGTCAGCCTTCAAGTAAAAGCTGATTTCTGCGGCTATTAATTTATAGGTTTGTCTCACATATTAGTGTCAGTATATAGGTGCTATGGTATGTTTAGTGCTCCAATTCTTACAATATAAGGTCTGCATACATTGTTTCTTGTTGATTGTTGTGTCCTAGAAATGACGCGCAAACTCAGCCTTCCACTCTAGTTGTGCAAATGATCAATGTATTCATTTTTAATTTTGACCAGGATCCTTTGAACTCTTTACAACCTTCATCTTCTTCAAAGATTTACTCTGCACAGCAGAGGACAGGCAAGAGTAAGAAACAGTCACACAAATTGCACAAAAGTCAAATCCCTGGACATGGACATATCCAACAGAGATTGCACCCTGGTTTGTCTTCTAGTCAAAATTGTGCAACGGCACATTATGGTGCTGTTACAGGATTAAGAACAACTACAGATGGGATGTACCTTCTTAGCTCAGGTTCTGATTCTCGCTTAAGACTTTGGGATATTGATTCAGGCTGCAATACTTTGGTCAATTTTGAAGCTATGCGATTACAGACTAGCAAACCGCTACAATTAGCTGTCACTGAGGATCCATCACTTGTATTCATCCCATGCATGGCAAGCATTAAGGCGTACAATTTATGGTCTGGTATGACATTTCAAACATTCCGGGGGCACTATGAACCTGTTAATTGCTGCTACTGTAGTGCACAAGAACAAGAGCTTTATACTGGCAGCAATGACATGCAAATTCTTGTGTGGTCTCCATCAACTCCAGCGTTTACTGAAATGGGGAGCCACGTTTATTACTACTGTACAGTACTTCATCCTGCAGTTTCACCCGAAATATCACTTTGATAAAGACAGCTAAGTGAAATGTAAATATGCCAGATTCTCTCTCCGATAATGAAAATGCTCCTAT]

[+] EMBL AK111811             [CTCCATCTTCGGCCAGCATAGCTCCTGCCTGGCCACCCCCAGGTTTGCTCTCGCGGCTCTTCCCTCACCGGTGCGCCGCACCGTCCACCGCCCGCCGGAGTCGCCGTCGTCGCCGCCGAGAAGAGGGACGCAGCTGCCGTGCGCGGCCGAGTGGATGTGGTGTGAGGCGGTGAGGTGGAGGGAACACGGGGAGCTGGGCGCACGGCGCTTCGAGACCGCCGCCCGGGCGCGCCGCACCGCCTCGCTCGCGCTCTCCAACCGCAAGGAGTTCACCACCCCGCACAACGGCGCCATCAACTCCCTCCAGAGCGGCGGTACCTACTCGCTGGCGCATCGGATGGATCAGCCGCTATATTCGATGTGCAGAATGCAACCGAATACGAAGCCGGGTTCATTGCCAAGCACAGGAGCATTCTGCTTGTGGACAAGCAGCATGAAAATGGCCACAAGTTCGTGGTATCGATGGCCGTATGGTATCCTGTGGACACTGGGCTGTTCGTGACAGCTTCTTTTGATCAGTATGTCAAAGTGTGGGATACTAATTCGACTCAAGTCGTAATGGATTTTAAGATGCCTGGAAAAGTGTATAGCGCAGCAATGTCCCCAATTGCAACAACACATATGCTGATCGCTACTGGAAGTGCGGATGTTCAGGTCCATTTATGTGACATTGCTTCTGGAGCCTTTACCCACACGTTGTCCGGTCATCGTGATGGTATCATGTCTTTGGAGTGGTCTACTTCAAGTGAGTGGATTTTGATGAGCGGTGGTTGTGATGGAGCAATACGATTTTGGGACATAAGACGAGCTGGATGCTTTCTTGTTCTTGATCAGTCACGGTCTCAACTAGGAAGGCGGCCTCCTTTTCTTGAGGGCACCTCAGATAAGATATGGTCACCATTATCCATCACTTACATTTGTTTTCAGAATATTTGGTTGCAATGCTAAAGCTGGACTTCCACTATTATTTTCTGCAAAAGCTTCAAAAATGTTACAGCTTCAAGTAAAAAATTATGGCTGTAATGCTAGATCAATACAGTCAGCCTTCAAGTAAAAGCTGATTTCTGCGGCTATTAATTTATAGGTTTGTCTCACATATTAGTGTCAGTATATAGGTGCTATGGTATGTTTAGTGCTCCAATTCTTACAATATAAGGTCTGCATACATTGTTTCTTGTTGATTGTTGTGTCCTAGAAATGACGCGCAAACTCAGCCTTCCACTCTAGTTGTGCAAATGATCAATGTATTCATTTTTAATTTTGACCAGGATCCTTTGAACTCTTTACAACCTTCATCTTCTTCAAAGATTTACTCTGCACAGCAGAGGACAGGCAAGAGTAAGAAACAGTCACACAAATTGCACAAAAGTCAAATCCCTGGACATGGACATATCCAACAGAGATTGCACCCTGGTTTGTCTTCTAGTCAAAATTGTGCAACGGCACATTATGGTGCTGTTACAGGATTAAGAACAACTACAGATGGGATGTACCTTCTTAGCTCAGGTTCTGATTCTCGCTTAAGACTTTGGGATATTGATTCAGGCTGCAATACTTTGGTCAATTTTGAAGCTATGCGATTACAGACTAGCAAACCGCTACAATTAGCTGTCACTGAGGATCCATCACTTGTATTCATCCCATGCATGGCAAGCATTAAGGCGTACAATTTATGGTCTGGTATGACATTTCAAACATTCCGGGGGCACTATGAACCTGTTAATTGCTGCTACTGTAGTGCACAAGAACAAGAGCTTTATACTGGCAGCAATGACATGCAAATTCTTGTGTGGTCTCCATCAACTCCAGCGTTTACTGAAATGGGGAGCCACGTTTATTACTACTGTACAGTACTTCATCCTGCAGTTTCACCCGAAATATCACTTTGATAAAGACAGCTAAGTGAAATGTAAATATGCCAGATTCTCTCTCCGATAATGAAAATGCTCCTAT]




>consensus_8144#0
CTCCATCTTCGGCCAGCATAGCTCCTGCCTGGCCACCCCCAGGTTTGCTCTCGCGGCTCT
TCCCTCACCGGTGCGCCGCACCGTCCACCGCCCGCCGGAGTCGCCGTCGTCGCCGCCGAG
AAGAGGGACGCAGCTGCCGTGCGCGGCCGAGTGGATGTGGTGTGAGGCGGTGAGGTGGAG
GGAACACGGGGAGCTGGGCGCACGGCGCTTCGAGACCGCCGCCCGGGCGCGCCGCACCGC
CTCGCTCGCGCTCTCCAACCGCAAGGAGTTCACCACCCCGCACAACGGCGCCATCAACTC
CCTCCAGAGCGGCGGTACCTACTCGCTGGCGCATCGGATGGATCAGCCGCTATATTCGAT
GTGCAGAATGCAACCGAATACGAAGCCGGGTTCATTGCCAAGCACAGGAGCATTCTGCTT
GTGGACAAGCAGCATGAAAATGGCCACAAGTTCGTGGTATCGATGGCCGTATGGTATCCT
GTGGACACTGGGCTGTTCGTGACAGCTTCTTTTGATCAGTATGTCAAAGTGTGGGATACT
AATTCGACTCAAGTCGTAATGGATTTTAAGATGCCTGGAAAAGTGTATAGCGCAGCAATG
TCCCCAATTGCAACAACACATATGCTGATCGCTACTGGAAGTGCGGATGTTCAGGTCCAT
TTATGTGACATTGCTTCTGGAGCCTTTACCCACACGTTGTCCGGTCATCGTGATGGTATC
ATGTCTTTGGAGTGGTCTACTTCAAGTGAGTGGATTTTGATGAGCGGTGGTTGTGATGGA
GCAATACGATTTTGGGACATAAGACGAGCTGGATGCTTTCTTGTTCTTGATCAGTCACGG
TCTCAACTAGGAAGGCGGCCTCCTTTTCTTGAGGGCACCTCAGATAAGATATGGTCACCA
TTATCCATCACTTACATTTGTTTTCAGAATATTTGGTTGCAATGCTAAAGCTGGACTTCC
ACTATTATTTTCTGCAAAAGCTTCAAAAATGTTACAGCTTCAAGTAAAAAATTATGGCTG
TAATGCTAGATCAATACAGTCAGCCTTCAAGTAAAAGCTGATTTCTGCGGCTATTAATTT
ATAGGTTTGTCTCACATATTAGTGTCAGTATATAGGTGCTATGGTATGTTTAGTGCTCCA
ATTCTTACAATATAAGGTCTGCATACATTGTTTCTTGTTGATTGTTGTGTCCTAGAAATG
ACGCGCAAACTCAGCCTTCCACTCTAGTTGTGCAAATGATCAATGTATTCATTTTTAATT
TTGACCAGGATCCTTTGAACTCTTTACAACCTTCATCTTCTTCAAAGATTTACTCTGCAC
AGCAGAGGACAGGCAAGAGTAAGAAACAGTCACACAAATTGCACAAAAGTCAAATCCCTG
GACATGGACATATCCAACAGAGATTGCACCCTGGTTTGTCTTCTAGTCAAAATTGTGCAA
CGGCACATTATGGTGCTGTTACAGGATTAAGAACAACTACAGATGGGATGTACCTTCTTA
GCTCAGGTTCTGATTCTCGCTTAAGACTTTGGGATATTGATTCAGGCTGCAATACTTTGG
TCAATTTTGAAGCTATGCGATTACAGACTAGCAAACCGCTACAATTAGCTGTCACTGAGG
ATCCATCACTTGTATTCATCCCATGCATGGCAAGCATTAAGGCGTACAATTTATGGTCTG
GTATGACATTTCAAACATTCCGGGGGCACTATGAACCTGTTAATTGCTGCTACTGTAGTG
CACAAGAACAAGAGCTTTATACTGGCAGCAATGACATGCAAATTCTTGTGTGGTCTCCAT
CAACTCCAGCGTTTACTGAAATGGGGAGCCACGTTTATTACTACTGTACAGTACTTCATC
CTGCAGTTTCACCCGAAATATCACTTTGATAAAGACAGCTAAGTGAAATGTAAATATGCC
AGATTCTCTCTCCGATAATGAAAATGCTCCTAT

consensusID : consensus_8144#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 705
fasta sequence

                              [GCGCATTATGGTCTGTTTCGGGATTAAGAACACCTACAGATGGGATGTACCTTTTTAGGCCAGGTTTTGATCTCCGCCTAAGCCTTTGGGATATTGATTCAGGCTGTAATACTTTGGTCAATTTTGAAGCTATGCGATTACAGGCTAGCAAACCCCTACAATTAGCTGTCACTGAGGATCCATCACTTGTA-TTCATCCCATGCATGGC--AA-GCATTAAGGCG-TACAATTTATGGTCTGGTATGACATTTCAAACATTCCGTGGGCACTATGAACCTGTTAATTGCTGCTACTATAGTGC-ACA-AG-AACA-AGAGCTTTATACTGGCAGCAATGACAGGCAAATTCTTGTGTGGTCTCC-ATCAACTCC-AGCATTTACTGAAATGGAAGATGATGGCAAGAGGCAAATGGATTTTGTAGTCGATGAGGATAACTGGAGCGACTGAGAATTATGCATGTATAGTTGTATTGTAC-ACTAAGAACATTGACATTAGGGATGTTAACAGGCCATG-TTTTTTTTTCTTTTTTTAAGGGGAGCCACGTTTATTACTATTGTAC-AGTACTTCATCCTGCAGTTTCACCCGAAATATCACTTTGATAAAGACAGCTAAGTGAAATGTAAATATGCCAAATTCTCTCT-CCAATAATGAAAATGCTCCTATATCGTGTTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGCGGGCCNGCC]

[-] EMBL CA760239             [GCGCATTATGGTCTGTTTCGGGATTAAGAACACCTACAGATGGGATGTACCTTTTTAGGCCAGGTTTTGATCTCCGCCTAAGCCTTTGGGATATTGATTCAGGCTGTAATACTTTGGTCAATTTTGAAGCTATGCGATTACAGGCTAGCAAACCCCTACAATTAGCTGTCACTGAGGATCCATCACTTGTA TTCATCCCATGCATGGC  AA GCATTAAGGCG TACAATTTATGGTCTGGTATGACATTTCAAACATTCCGTGGGCACTATGAACCTGTTAATTGCTGCTACTATAGTGC ACA AG AACA AGAGCTTTATACTGGCAGCAATGACAGGCAAATTCTTGTGTGGTTTCC ATCAACTCC AGCATTTACTGAAATGGAAGATGATGGCAAGAGGCAAATGGATTTTGTAGTCGATGAGGATAACTGGAGCGACTGAGAATTATGCATGTATAGTTGTATTGTAC CCTAAGAACATTGCCATTAGGGATGTTAACAGGCCATG TTTTTTTTTCTTTTTTTAAGGGGAGCCACGTTTATTACTATTGTAC AGTACTTCATCCTGCAGTTTCACCCGAAATATCCCTTTGATAAAGACAGCTAAGTGAAATGTAAATATGCCAAATTCTCTCT CCAATAATGAAAATGCTCCTATATCGTGTTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGCGGGCCNGCC]
[-] EMBL CB638984             [                                                                                                 TTCAGGCTGTAATACTTTGGTCAATTTTGAAGCTATGCGATTACAGACTAGCAAACCACTACAATTAGCTGTCACTGAGGATCCATCACTTGTA TTCATCCCATGCATGGC  AA GCATTAAGGCG TACAATTTATGGTCTGGTATGACATTTCAAACATTCCGTGGGCACTATGAACCTGTTAATTGCTGCTACTATAGTGC ACA AG AACA AGAGCTTTATACTGGCAGCAATGACAGGCAAATTCTTGTGTGGTCTCC ATCAACTCC AGCATTTACTGAAATGGAAGATGATGGCAAGAGGCAAATGGATTTTGTAGTCGATGAGGATAACTGGAGCGACTGAGAATTATGCATGTATAGTTGTATTGTAC ACTAAGAACATTGACATTAGGGATGTTAACAGGCCATG TTTTTTTTTCTTTTTTTAAGGGAAGCCACGTTTATTACTATTGTAC AGTACTTCATCCTGCAGTTTCACCCGAAATATCACTTTGATAAAGACAGCTAAGTGAAATGTAAATATGCCAAATTTTTTCTCCCAATAATGAAAATGCTCAAATATCG                                             ]
[+] EMBL BI813725             [                                                                                                                                                                                          TTATACTTCA  CCTTGTGTTGCCAAATTCATGTAGGCGATAC ATTTATGGTCTGGTATGACATTTCAAACATTCCGTGGGCACTATGAACCTGTTAATTGCTGCTACTATAGTGCTACATAGAAACATAGAGCTTTATACTGGCAGCAATGACAGGCAAATTCTTGTGTGGTCTCCTATCAACTCCTAGCATTTACTGAAATGGAAGATGATGGCAAGAGGCAAATGGATTTTGTAGTCGATGAGGATAACTGGAGCGACTGAGAATTATGCATGTATAGTTGTATTGTACTACTAAGAACATTGACATTAGGGATGTTAACAGGCCATGTTTTTTTTTTCTTTTTTTAAGGGGAGCCACGTTTATTACTATTGTACTAGTACTTCATCCTGCAGTTTCACCCGAAATATCACTTTGATAAAGACAGCTAAGTGAAATGTAAATATGCC AATTCTCTCT CCAATAAAAAAA                                                           ]




>consensus_8144#1
GCGCATTATGGTCTGTTTCGGGATTAAGAACACCTACAGATGGGATGTACCTTTTTAGGC
CAGGTTTTGATCTCCGCCTAAGCCTTTGGGATATTGATTCAGGCTGTAATACTTTGGTCA
ATTTTGAAGCTATGCGATTACAGGCTAGCAAACCCCTACAATTAGCTGTCACTGAGGATC
CATCACTTGTATTCATCCCATGCATGGCAAGCATTAAGGCGTACAATTTATGGTCTGGTA
TGACATTTCAAACATTCCGTGGGCACTATGAACCTGTTAATTGCTGCTACTATAGTGCAC
AAGAACAAGAGCTTTATACTGGCAGCAATGACAGGCAAATTCTTGTGTGGTCTCCATCAA
CTCCAGCATTTACTGAAATGGAAGATGATGGCAAGAGGCAAATGGATTTTGTAGTCGATG
AGGATAACTGGAGCGACTGAGAATTATGCATGTATAGTTGTATTGTACACTAAGAACATT
GACATTAGGGATGTTAACAGGCCATGTTTTTTTTTCTTTTTTTAAGGGGAGCCACGTTTA
TTACTATTGTACAGTACTTCATCCTGCAGTTTCACCCGAAATATCACTTTGATAAAGACA
GCTAAGTGAAATGTAAATATGCCAAATTCTCTCTCCAATAATGAAAATGCTCCTATATCG
TGTTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGCGGGCCNGCC

consensusID : consensus_8144#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 695
fasta sequence

                              [ATCCCTGGACAAGTGCCATATCCAACAGCAGGGTGCCCCGCCGGTTTGTTTTCCTAGTAAAAGTTGTGCAGCGGCCCATTATGGCGTTGGTCCAGGAGTAAGCACANCTGCAGATGGGATGTCCCTTCTTAGCTCAGGGTGTGATTCTCGCCTAAGACTCTGGGATATTGATTCAGGCTGCAATACTTTGGTCAATTTTGAAGCTATGCGATTACAGGCTAGCAAACCGCTACAATTAGCTGTCACTGAGGATCCATCACTGGTATTCATCCCATGCATGGCAAGCATTAAGGCGTACAATTTATGGTCTGGTATGACATTTCAAACATTCCGGGGGCACTATGAACCTGTTAATTGCTGCTACTGTAGTGCACAAGAACAAGAGCTTTATACTGGCAGCAATGACATGCAAATTCTTGTGTGGTCTCCATCAACTCCAGCGTTTACTGAAATGGTTTATTTTCTATTTCTTGTTATCATATATCTTTCTGTAGAATTTTCCTATATCCTATCAAATTCAAATTTTTTAGGAGTAGTCGGGCATATTAGGATATTATCGCATAAGCTTTTTTAGGCATTTGATTGTTAGCACTTCTAAGCCTCTGCAAGAAGATGATGGCAAGAGGCAAACGGATTTTGTAGTCGATGACGATAACTGGAGCGACTGAGAATTATTCATGAGGCAAAAAAAAAAA]

[-] EMBL CA760264             [ATCCCTGGACAAGTGCCATATCCAACAGCAGGGTGCCCCGCCGGTTTGTTTTCCTAGTAAAAGTTGTGCAGCGGCCCATTATGGCGTTGGTCCAGGAGTAAGCACANCTGCAGATGGGATGTCCCTTCTTAGCTCAGGGTGTGATTCTCGCCTAAGACTCTGGGATATTGATTCAGGCTGCAATACTTTGGTCAATTTTGAAGCTATGCGATTACAGGCTAGCAAACCGCTACAATTAGCTGTCACTGAGGATCCATCACTGGTATTCATCCCATGCATGGCAAGCATTAAGGCGTACAATTTATGGTCTGGTATGACATTTCAAACATTCCGGGGGCACTATGAACCTGTTAATTGCTGCTACTGTAGTGCACAAGAACAAGAGCTTTATACTGGCAGCAATGACATGCAAATTCTTGTGTGGTCTCCATCAACTCCAGCGTTTACTGAAATGGTTTATTTTCTATTTCTTGTTATCATATATCTTTCTGTAGAATTTTCCTATATCCTATCAAATTCAAATTTTTTAGGAGTAGTCGGGCATATTAGGATATTATCGCATAAGCTTTTTTAGGCATTTGATTGTTAGCACTTCTAAGCCTCTGCAAGAAGATGATGGCAAGAGGCAAACGGATTTTGTAGTCGATGACGATAACTGGAGCGACTGAGAATTATTCATGAGGCAAAAAAAAAAA]




>consensus_8144#2
ATCCCTGGACAAGTGCCATATCCAACAGCAGGGTGCCCCGCCGGTTTGTTTTCCTAGTAA
AAGTTGTGCAGCGGCCCATTATGGCGTTGGTCCAGGAGTAAGCACANCTGCAGATGGGAT
GTCCCTTCTTAGCTCAGGGTGTGATTCTCGCCTAAGACTCTGGGATATTGATTCAGGCTG
CAATACTTTGGTCAATTTTGAAGCTATGCGATTACAGGCTAGCAAACCGCTACAATTAGC
TGTCACTGAGGATCCATCACTGGTATTCATCCCATGCATGGCAAGCATTAAGGCGTACAA
TTTATGGTCTGGTATGACATTTCAAACATTCCGGGGGCACTATGAACCTGTTAATTGCTG
CTACTGTAGTGCACAAGAACAAGAGCTTTATACTGGCAGCAATGACATGCAAATTCTTGT
GTGGTCTCCATCAACTCCAGCGTTTACTGAAATGGTTTATTTTCTATTTCTTGTTATCAT
ATATCTTTCTGTAGAATTTTCCTATATCCTATCAAATTCAAATTTTTTAGGAGTAGTCGG
GCATATTAGGATATTATCGCATAAGCTTTTTTAGGCATTTGATTGTTAGCACTTCTAAGC
CTCTGCAAGAAGATGATGGCAAGAGGCAAACGGATTTTGTAGTCGATGACGATAACTGGA
GCGACTGAGAATTATTCATGAGGCAAAAAAAAAAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_8144#0      CTCCATCTTCGGCCAGCATAGCTCCTGCCTGGCCACCCCCAGGTTTGCTCTCGCGGCTCT 60
consensus_8144#1      ------------------------------------------------------------
consensus_8144#2      ------------------------------------------------------------
                                                                                  

consensus_8144#0      TCCCTCACCGGTGCGCCGCACCGTCCACCGCCCGCCGGAGTCGCCGTCGTCGCCGCCGAG 120
consensus_8144#1      ------------------------------------------------------------
consensus_8144#2      ------------------------------------------------------------
                                                                                  

consensus_8144#0      AAGAGGGACGCAGCTGCCGTGCGCGGCCGAGTGGATGTGGTGTGAGGCGGTGAGGTGGAG 180
consensus_8144#1      ------------------------------------------------------------
consensus_8144#2      ------------------------------------------------------------
                                                                                  

consensus_8144#0      GGAACACGGGGAGCTGGGCGCACGGCGCTTCGAGACCGCCGCCCGGGCGCGCCGCACCGC 240
consensus_8144#1      ------------------------------------------------------------
consensus_8144#2      ------------------------------------------------------------
                                                                                  

consensus_8144#0      CTCGCTCGCGCTCTCCAACCGCAAGGAGTTCACCACCCCGCACAACGGCGCCATCAACTC 300
consensus_8144#1      ------------------------------------------------------------
consensus_8144#2      ------------------------------------------------------------
                                                                                  

consensus_8144#0      CCTCCAGAGCGGCGGTACCTACTCGCTGGCGCATCGGATGGATCAGCCGCTATATTCGAT 360
consensus_8144#1      ------------------------------------------------------------
consensus_8144#2      ------------------------------------------------------------
                                                                                  

consensus_8144#0      GTGCAGAATGCAACCGAATACGAAGCCGGGTTCATTGCCAAGCACAGGAGCATTCTGCTT 420
consensus_8144#1      ------------------------------------------------------------
consensus_8144#2      ------------------------------------------------------------
                                                                                  

consensus_8144#0      GTGGACAAGCAGCATGAAAATGGCCACAAGTTCGTGGTATCGATGGCCGTATGGTATCCT 480
consensus_8144#1      ------------------------------------------------------------
consensus_8144#2      ------------------------------------------------------------
                                                                                  

consensus_8144#0      GTGGACACTGGGCTGTTCGTGACAGCTTCTTTTGATCAGTATGTCAAAGTGTGGGATACT 540
consensus_8144#1      ------------------------------------------------------------
consensus_8144#2      ------------------------------------------------------------
                                                                                  

consensus_8144#0      AATTCGACTCAAGTCGTAATGGATTTTAAGATGCCTGGAAAAGTGTATAGCGCAGCAATG 600
consensus_8144#1      ------------------------------------------------------------
consensus_8144#2      ------------------------------------------------------------
                                                                                  

consensus_8144#0      TCCCCAATTGCAACAACACATATGCTGATCGCTACTGGAAGTGCGGATGTTCAGGTCCAT 660
consensus_8144#1      ------------------------------------------------------------
consensus_8144#2      ------------------------------------------------------------
                                                                                  

consensus_8144#0      TTATGTGACATTGCTTCTGGAGCCTTTACCCACACGTTGTCCGGTCATCGTGATGGTATC 720
consensus_8144#1      ------------------------------------------------------------
consensus_8144#2      ------------------------------------------------------------
                                                                                  

consensus_8144#0      ATGTCTTTGGAGTGGTCTACTTCAAGTGAGTGGATTTTGATGAGCGGTGGTTGTGATGGA 780
consensus_8144#1      ------------------------------------------------------------
consensus_8144#2      ------------------------------------------------------------
                                                                                  

consensus_8144#0      GCAATACGATTTTGGGACATAAGACGAGCTGGATGCTTTCTTGTTCTTGATCAGTCACGG 840
consensus_8144#1      ------------------------------------------------------------
consensus_8144#2      ------------------------------------------------------------
                                                                                  

consensus_8144#0      TCTCAACTAGGAAGGCGGCCTCCTTTTCTTGAGGGCACCTCAGATAAGATATGGTCACCA 900
consensus_8144#1      ------------------------------------------------------------
consensus_8144#2      ------------------------------------------------------------
                                                                                  

consensus_8144#0      TTATCCATCACTTACATTTGTTTTCAGAATATTTGGTTGCAATGCTAAAGCTGGACTTCC 960
consensus_8144#1      ------------------------------------------------------------
consensus_8144#2      ------------------------------------------------------------
                                                                                  

consensus_8144#0      ACTATTATTTTCTGCAAAAGCTTCAAAAATGTTACAGCTTCAAGTAAAAAATTATGGCTG 1020
consensus_8144#1      ------------------------------------------------------------
consensus_8144#2      ------------------------------------------------------------
                                                                                  

consensus_8144#0      TAATGCTAGATCAATACAGTCAGCCTTCAAGTAAAAGCTGATTTCTGCGGCTATTAATTT 1080
consensus_8144#1      ------------------------------------------------------------
consensus_8144#2      ------------------------------------------------------------
                                                                                  

consensus_8144#0      ATAGGTTTGTCTCACATATTAGTGTCAGTATATAGGTGCTATGGTATGTTTAGTGCTCCA 1140
consensus_8144#1      ------------------------------------------------------------
consensus_8144#2      ------------------------------------------------------------
                                                                                  

consensus_8144#0      ATTCTTACAATATAAGGTCTGCATACATTGTTTCTTGTTGATTGTTGTGTCCTAGAAATG 1200
consensus_8144#1      ------------------------------------------------------------
consensus_8144#2      ------------------------------------------------------------
                                                                                  

consensus_8144#0      ACGCGCAAACTCAGCCTTCCACTCTAGTTGTGCAAATGATCAATGTATTCATTTTTAATT 1260
consensus_8144#1      ------------------------------------------------------------
consensus_8144#2      ------------------------------------------------------------
                                                                                  

consensus_8144#0      TTGACCAGGATCCTTTGAACTCTTTACAACCTTCATCTTCTTCAAAGATTTACTCTGCAC 1320
consensus_8144#1      ------------------------------------------------------------
consensus_8144#2      ------------------------------------------------------------
                                                                                  

consensus_8144#0      AGCAGAGGACAGGCAAGAGTAAGAAACAGTCACACAAATTGCACAAAAGTCAAATCCCTG 1380
consensus_8144#1      ------------------------------------------------------------
consensus_8144#2      -----------------------------------------------------ATCCCTG 7
                                                                                  

consensus_8144#0      GACATG-GACATATCCAACAG--AGATTGCACCCTGGTTTGTCTTC-TAGTCAAAATTGT 1436
consensus_8144#1      ------------------------------------------------------------
consensus_8144#2      GACAAGTGCCATATCCAACAGCAGGGTGCCCCGCCGGTTTGTTTTCCTAGTAAAAGTTGT 67
                                                                                  

consensus_8144#0      GCAACGGCACATTATGGTGCTGTTACAGGATTAAGAACAACTACAGATGGGATGTACCTT 1496
consensus_8144#1      ------GCGCATTATGGT-CTGTTTCGGGATTAAGAACACCTACAGATGGGATGTACCTT 53
consensus_8144#2      GCAGCGGCCCATTATGGCGTTGGTCCAGGAGTAAGCACANCTGCAGATGGGATGTCCCTT 127
                            ** ********   ** * * *** **** *** ** ************ ****

consensus_8144#0      CTTAGCTCAGGTTCTGATTCTCGCTTAAGACTTTGGGATATTGATTCAGGCTGCAATACT 1556
consensus_8144#1      TTTAGGCCAGGTTTTGATCTCCGCCTAAGCCTTTGGGATATTGATTCAGGCTGTAATACT 113
consensus_8144#2      CTTAGCTCAGGGTGTGATTCTCGCCTAAGACTCTGGGATATTGATTCAGGCTGCAATACT 187
                       ****  **** * ****   *** **** ** ******************** ******

consensus_8144#0      TTGGTCAATTTTGAAGCTATGCGATTACAGACTAGCAAACCGCTACAATTAGCTGTCACT 1616
consensus_8144#1      TTGGTCAATTTTGAAGCTATGCGATTACAGGCTAGCAAACCCCTACAATTAGCTGTCACT 173
consensus_8144#2      TTGGTCAATTTTGAAGCTATGCGATTACAGGCTAGCAAACCGCTACAATTAGCTGTCACT 247
                      ****************************** ********** ******************

consensus_8144#0      GAGGATCCATCACTTGTATTCATCCCATGCATGGCAAGCATTAAGGCGTACAATTTATGG 1676
consensus_8144#1      GAGGATCCATCACTTGTATTCATCCCATGCATGGCAAGCATTAAGGCGTACAATTTATGG 233
consensus_8144#2      GAGGATCCATCACTGGTATTCATCCCATGCATGGCAAGCATTAAGGCGTACAATTTATGG 307
                      ************** *********************************************

consensus_8144#0      TCTGGTATGACATTTCAAACATTCCGGGGGCACTATGAACCTGTTAATTGCTGCTACTGT 1736
consensus_8144#1      TCTGGTATGACATTTCAAACATTCCGTGGGCACTATGAACCTGTTAATTGCTGCTACTAT 293
consensus_8144#2      TCTGGTATGACATTTCAAACATTCCGGGGGCACTATGAACCTGTTAATTGCTGCTACTGT 367
                      ************************** ******************************* *

consensus_8144#0      AGTGCACAAGAACAAGAGCTTTATACTGGCAGCAATGACATGCAAATTCTTGTGTGGTCT 1796
consensus_8144#1      AGTGCACAAGAACAAGAGCTTTATACTGGCAGCAATGACAGGCAAATTCTTGTGTGGTCT 353
consensus_8144#2      AGTGCACAAGAACAAGAGCTTTATACTGGCAGCAATGACATGCAAATTCTTGTGTGGTCT 427
                      **************************************** *******************

consensus_8144#0      CCATCAACTCCAGCGTTTACTGAAATGG-------------------------------- 1824
consensus_8144#1      CCATCAACTCCAGCATTTACTGAAATGGAAGATGATGGCAAGAGGCAAATGGATTTTGTA 413
consensus_8144#2      CCATCAACTCCAGCGTTTACTGAAATGGTTTAT--------------------------- 460
                      ************** *************                                

consensus_8144#0      ------------------------------------------------------------
consensus_8144#1      GTCGATGAGGATAACTGGAGCGACTGAGAATTATGCATGTATAGTTGTATTGTACACTAA 473
consensus_8144#2      -------------------------------TTTCTATTTCTTGTTATCATATATCTT-- 487
                                                                                  

consensus_8144#0      ------------------------------------------------------GGAGCC 1830
consensus_8144#1      GAACATTGACATTAGGGATGTTAACAGGCCATGTTTTTTTTTCTTTTTTTAAGGGGAGCC 533
consensus_8144#2      ---------TCTGTAGAATTTTCCTATATCCTATCAAATTCAAATTTTTTAGGAGTAGTC 538
                                                                            * ** *

consensus_8144#0      ACGTTTATTACTACTGTACAGTACTTCATCCTGCAGTTTCACCCGAAATATCACTTTGAT 1890
consensus_8144#1      ACGTTTATTACTATTGTACAGTACTTCATCCTGCAGTTTCACCCGAAATATCACTTTGAT 593
consensus_8144#2      GGGCATATTAGGATATTATCGCATAAGCTTTTTTAGGCATTTGATTGTTAGCACTTCTA- 597
                        *  *****  *   **  * *     *  *  **            ** *****  * 

consensus_8144#0      AAAGACAGCTAAGTGA-AATGTAAATATGC---CAGATTCTCTCTCCGATAATGAAAAT- 1945
consensus_8144#1      AAAGACAGCTAAGTGA-AATGTAAATATGC---CAAATTCTCTCTCCAATAATGAAAAT- 648
consensus_8144#2      AGCCTCTGCAAGAAGATGATGGCAAGAGGCAAACGGATTTTGTAGTCGATGACGATAACT 657
                      *    * ** *   **  ***  ** * **   *  *** * *   * ** * ** **  

consensus_8144#0      ---GCTCCTAT------------------------------------------------- 1953
consensus_8144#1      ---GCTCCTATATCGTGTTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGCGGGCCNGCC 705
consensus_8144#2      GGAGCGACTGAGAATTATTCATGAGGCAAAAAAAAAAA---------------------- 695
                         **  **