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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8155#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 1204 fasta sequence
[TCTCGCCCCGCCGCCATCTGTGTAGTCGCCACCTCCCCACCGTCCCTCTCTTCCAAGTTCTTCCAAGTTTCAGTTCACCGGTGGAGAGATAGCTTCGGCGGAAGACAGGGAAGGAGGTCAATCTGCCGCGACTAATGGAGAATATGGAGAATGAATTTCGTAGGGTCTTCAAACATGTCTCTCCAAGTGTTGTGTTAGTGGAACAAGTCGGACGGATCGACTATTACTGTATTGGTTCGATTATTTTCAGTGATAAAAAAAAACTTTCATACTCANCCAGTCCTCANTTACTTCATCTGCTGCGAATCTGTCTGTCCGTTTCTCCGATGGTTTTAAACAGTCAGCATCCCTCATTTTAAAACAA-GATGTACAAGAAAGTGCAAGCGGACAATGTGAATTATGCATCTTGATGACTGATTATCATTCCAATTCCAAGACGGTGGAGTTCTTTGAAGGTGATGTTGATCATTCATATGCGGTTGCTATCGCCCCTGAGTCAAAATATTCCGTACACAACATGCCCGGTTTTATTATACATAGGTCACTTGAAGCAGCAAGCGATAGCTCTGAAAGTGTGTACAAAGGTTCTGAGGATTATTTCACTTTCGCATGCCGATATGGAGACACAAGTCCGAACCTTGTGAGCAGATTAATCACAGGTCCAGTTTTTAATCTGAATGGGCAAGTTTTAGGGATCGTTGTTGATGATATTGAGTATAAATT-CTGGCCCAAGAAGCCCAGGAAGGAAGATGGTAGTCAAGAGATTATTCATGAAGATCTTTTCTATCGCGCTGGATATTTCTTAAAGGTTGCTATGCGTGTTA-ACAACCTTCAGCAAGACTTGAG-GTCGATGGTAAAAGACAATGACTGGCAGAATGGTCTGAAGAAAATAGCTACTGAAAGAAGAGTGTAACAGCAAAAAGGAGCATGATTCCTGAGATGAACAGTAATAGTTTTTGGTCGCGATCCCTAAACTGTTTCTGCTGTAGTTTAGTTGTCTGCTAAGTACTTTGGCTTGAATCAGTCATATTTAATCGTACTGTAAGACTTTATTTGTCGCAAAGTGTTGGCTCTGCAGACTTTATATGTTTTCATTCGTACCGATCGGTTGTAATTAATTTATCAGACTTGAGGTCTTTTGTTTGGAAAAAGTTCATTTTTGTCTTAATTATCACCAAATTCAAATAAAAAAAAAAAAAAAAAA]
[+] EMBL C91758 [TCTCGCCCCGCCGCCATCTGTGTAGTCGCCACCTCCCCACCGTCCCTCTCTTCCAAGTTCTTCCAAGTTTCAGTTCACCGGTGGAGAGATAGCTTCGGCGGAAGACAGGGAAGGAGGTCAATCTGCCGCGACTAATGGAGAATATGGAGAATGAATTTCGTAGGGTCTTCAAACATGTCTCTCCAAGTGTTGTGTTAGTGGAACAAGTCGGACGGATCGACTATTACTGTATTGGTTCGATTATTTTCAGTGATAAAAAAAAACTTTCATACTCANCCAGTCCTCANTTACTTCATCTGCTGCGAATCTGTCTGTCCGTTTCTCCGATGGTTTTAAACAGTCAGCATCCCTCATTTTAAAACAAGGATGTACAAGAAAGTGCAAGCGGACAATGTGAATTATGCATCTTGATGACTGATTATCATTCCAATTCCAAGACGGg ]
[+] EMBL AK071576 [ GCCACCTCCCCACCGTCCCTCTCTTCCAAGTTCTTCCAAGTTTCAGTTCACCGGTGGAGAGATAGCTTCGGCGGAAGACAGGGAAGGAGGTCAATCTGCCGCGACTAATGGAGAATATGGAGAATGAATTTCGTAGGGTCTTCAAACATGTCTCTCCAAGTGTTGTGTTAGTGGAACAAGTCGGACGGATCGACTATTACTGTATTGGTTCGATTATTTTCAGTGATAAAAAAAAACTTTCATACTCACCCAGTCCTCAATTACTTCATCTGCTGCGAATCTGTCTGTCCGTTTCTCCGATGGTTTTAAACAGTCAGCATCCCTCATTTTAAAACAA GATGTACAAGAAAGTGCAAGCGGACAATGTGAATTATGCATCTTGATGACTGATTATCATTCCAATTCCAAGACGGTGGAGTTCTTTGAAGGTGATGTTGATCATTCATATGCGGTTGCTATCGCCCCTGAGTCAAAATATTCCGTACACAACATGCCCGGTTTTATTATACATAGGTCACTTGAAGCAGCAAGCGATAGCTCTGAAAGTGTGTACAAAGGTTCTGAGGATTATTTCACTTTCGCATGCCGATATGGAGACACAAGTCCGAACCTTGTGAGCAGATTAATCACAGGTCCAGTTTTTAATCTGAATGGGCAAGTTTTAGGGATCGTTGTTGATGATATTGAGTATAAATT CTGGCCCAAGAAGCCCAGGAAGGAAGATGGTAGTCAAGAGATTATTCATGAAGATCTTTTCTATCGCGCAGGATATTTCTTAAAGGTTGCTATGCGTGTTA ACAACCTTCAGCAAGACTTGAG GTCGATGGTAAAGGACAATGACTGGCAGAATGGTCTGAAGAAAATAGCTACTGAAAGAAGAGTGTAACAGCAAAAAGGAGCATGATTCCTGAGATGAACAGTAATAGTTTTTGGTCGCGATCCCTAAACTGTTTCTGCTGTAGTTTAGTTGTCTGCTAAGTACTTTGGCTTGAATCAGTCATATTTAATCGTACTGTAAGACTTTATTTGTCGCAAAGTGTTGGCTCTGCAGACTTTATATGTTTTCATTCGTACCGATCGGTTGTAATTAATTTATCAGACTTGAGGTC ]
[-] EMBL CB646687 [ TCATTTTAAAACAA GATGTACAAGAAAGTGCAAGCGGACAATGTGAATTATGCATCTTGATGACTGATTATCATTCCAATTCCAAGACGGTGGAGTTCTTTGAAGGTGATGTTGATCATTCATATGCGGTTGCTATCGCCCCTGAGTCAAAATATTCCGTACACAACATGCCCGGTTTTATTATACATAGGTCACTTGAAGCAGCAAGCGATAGCTCTGAAAGTGTGTACAAAGGTTCTGAGGATTATTTCACTTTCGCATGCCGATATGGAGACACAAGTCCGAACCTTGTGAGCAGATTAATCACAGGTCCAGTTTTTAATCTGAATGGGCAAGTTTTAGGGATCGTTGTTGATGATATTGAGTATAAATT CTGGCCCAAGAAGCCCAGGAAGGAAGATGGTAGTCAAGAGATTATTCATGAAGATCTTTTCTATCGCGCTGGATATTTCTTAAAGGTTGCTATGCGTGTTA ACAACCTTCAGCAAGACTTGAG GTCGATGGTAAAAGACAATGACTGGCAGAATGGTCTGAAGAAAATAGCTACTGAAAGAAGAGTGTAACAGCAAAAAGGAGCATGATTCCTGAGATGACCAGTAATAGTTTTTGGTCGCGATCCCTAAACTGTTTCTGCTGTAGTTTAGTTGTCTGCTAAGTACTTTGGCTTGAATCAGTCATATTTAATCGTACTGTAAGACTTTATTTGTCGCAAAGTGTTGGCTCTGCAGACTTTA ]
[+] EMBL AU029769 [ TATTGAGTATAAATTCCTGGCCCAAGAAGCCCAGGAAGGAAGATGGTAGTCAAGAGATTATTCATGAAGATCTTTTCTATCGCGNTGGATATTTCTTAAAGGTTGCTATGCGTGTTACACAACCTTCGGCATGACTTGAGNGTCGATGGTAAAAGACAATGACTGGCAGAATGGTCTGAAGAAANTAGCTACTGAAAGAAGAGTGTNACAGCAAAAAGGNGCATGATTCCTGAGATGAACAGTAATAGTTTTTGGTCGCGATCCCTAAACTGTTTCTGCTGTAGTTTAGTTNTCTGCTAAGTACTTTGGCTTGAATCAGTCATATTTAATCGTACTGTAAGACTTTATTTGTCGCAAAGTGTTGGCTCTGCAGACTTTATATGTTTTCATTCGTACCGATCGGTTGTAATTAATTTATCAGACTTGAGGTCTTTTGTTTGGAAAAAGTTCATTTTTGTCTTAATTATCACCAAATTCAAATAAAAAAAAAAAAAAAAAA]
consensusID : consensus_8155#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 763 fasta sequence
[CTCTCTTCCAAGTTCTTCCAAGTTTCAGTTCACCGGTGGAGAGATAGCTTCGGCGGAAGACAGGGAAGGAGGTCAATCTGCCGCGCACCTGCCGGATGCGGCGAGCTGCGGTGCGCCTTGTAGTGTTCTTTGTTCAAGGGCTGGGGTTGGGACTTGGGACTCCGCGAGCTCAAAGAGAGCACCTTATCTTCTGTTTTGTTTGTATAGGACTAATATATAATATTGCTTTTGGGATAAATTGCTATTGTGTTGTTAGTTTATGAGATAATTAGTTGATATGATTTTCTGTTTTGTATAGGACTAATGGAGAATATGGAGAATGAATTTCGTAGGGTCTTCAAACATGTCTCTCCAAGTGTTGTGTTAGTGGAACAAGTCGGACGGATCGACTATTACTGTATTGGTTCGATTATTTTCAGTGATAAAAAAAAACTTTCATACTCACCCAGTCCTCAATTACTTCATCTGCTGCGAATCTGTCTGTCCGTTTCTCCGATGGTTTTAAACAGTCAGCATCCCTCATTTTAAAACAAGATGTACAAGAAAGTGCAAGCGGACAATGTGAATTATGCATCTTGATGACTGATTATCATTCCAATTCCAAGACGGTGGAGTTCTTTGAAGGTGATGTTGATCATTCATATGCGGTTGCTATCGCCCCTGAGTCAAAATATTCCGTACACAACATGCCCGGTTTTATTATACATAGGTCACTTGAAGCAGCAAGCGATAGCTCTGAGAGTGTGTACAAAGGTTCTGAGGA]
[+] EMBL CB646686 [CTCTCTTCCAAGTTCTTCCAAGTTTCAGTTCACCGGTGGAGAGATAGCTTCGGCGGAAGACAGGGAAGGAGGTCAATCTGCCGCGCACCTGCCGGATGCGGCGAGCTGCGGTGCGCCTTGTAGTGTTCTTTGTTCAAGGGCTGGGGTTGGGACTTGGGACTCCGCGAGCTCAAAGAGAGCACCTTATCTTCTGTTTTGTTTGTATAGGACTAATATATAATATTGCTTTTGGGATAAATTGCTATTGTGTTGTTAGTTTATGAGATAATTAGTTGATATGATTTTCTGTTTTGTATAGGACTAATGGAGAATATGGAGAATGAATTTCGTAGGGTCTTCAAACATGTCTCTCCAAGTGTTGTGTTAGTGGAACAAGTCGGACGGATCGACTATTACTGTATTGGTTCGATTATTTTCAGTGATAAAAAAAAACTTTCATACTCACCCAGTCCTCAATTACTTCATCTGCTGCGAATCTGTCTGTCCGTTTCTCCGATGGTTTTAAACAGTCAGCATCCCTCATTTTAAAACAAGATGTACAAGAAAGTGCAAGCGGACAATGTGAATTATGCATCTTGATGACTGATTATCATTCCAATTCCAAGACGGTGGAGTTCTTTGAAGGTGATGTTGATCATTCATATGCGGTTGCTATCGCCCCTGAGTCAAAATATTCCGTACACAACATGCCCGGTTTTATTATACATAGGTCACTTGAAGCAGCAAGCGATAGCTCTGAGAGTGTGTACAAAGGTTCTGAGGA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_8155#0 ------------------------------------------------------------
consensus_8155#1 CTCTCTTCCAAGTTCTTCCAAGTTTCAGTTCACCGGTGGAGAGATAGCTTCGGCGGAAGA 60
consensus_8155#0 ------------------------------------------------------------
consensus_8155#1 CAGGGAAGGAGGTCAATCTGCCGCGCACCTGCCGGATGCGGCGAGCTGCGGTGCGCCTTG 120
consensus_8155#0 -------------------------------TCTCGCCCCGCCGCCATCTGTGTAGTCGC 29
consensus_8155#1 TAGTGTTCTTTGTTCAAGGGCTGGGGTTGGGACTTGGGACTCCGCGAGCTCAAAGAGAGC 180
** * * **** * ** **
consensus_8155#0 CACCTCCCCACCGTCCCTCTCTTCCAAGTTC--TTCCAAGTTTCAGTTCACCGGTGGAGA 87
consensus_8155#1 ACCTTATCTTCTGTTTTGTTTGTATAGGACTAATATATAATATTGCTTTTGGGATAAATT 240
* * * * ** * * * * * * * * ** * * *
consensus_8155#0 GATA--GCTTCGGCGGAAGACAGGGAAGGAGGTCAATCTG-----CCGC---------GA 131
consensus_8155#1 GCTATTGTGTTGTTAGTTTATGAGATAATTAGTTGATATGATTTTCTGTTTTGTATAGGA 300
* ** * * * * * * * ** ** ** * * **
consensus_8155#0 CTAATGGAGAATATGGAGAATGAATTTCGTAGGGTCTTCAAACATGTCTCTCCAAGTGTT 191
consensus_8155#1 CTAATGGAGAATATGGAGAATGAATTTCGTAGGGTCTTCAAACATGTCTCTCCAAGTGTT 360
************************************************************
consensus_8155#0 GTGTTAGTGGAACAAGTCGGACGGATCGACTATTACTGTATTGGTTCGATTATTTTCAGT 251
consensus_8155#1 GTGTTAGTGGAACAAGTCGGACGGATCGACTATTACTGTATTGGTTCGATTATTTTCAGT 420
************************************************************
consensus_8155#0 GATAAAAAAAAACTTTCATACTCANCCAGTCCTCANTTACTTCATCTGCTGCGAATCTGT 311
consensus_8155#1 GATAAAAAAAAACTTTCATACTCACCCAGTCCTCAATTACTTCATCTGCTGCGAATCTGT 480
************************ ********** ************************
consensus_8155#0 CTGTCCGTTTCTCCGATGGTTTTAAACAGTCAGCATCCCTCATTTTAAAACAAGATGTAC 371
consensus_8155#1 CTGTCCGTTTCTCCGATGGTTTTAAACAGTCAGCATCCCTCATTTTAAAACAAGATGTAC 540
************************************************************
consensus_8155#0 AAGAAAGTGCAAGCGGACAATGTGAATTATGCATCTTGATGACTGATTATCATTCCAATT 431
consensus_8155#1 AAGAAAGTGCAAGCGGACAATGTGAATTATGCATCTTGATGACTGATTATCATTCCAATT 600
************************************************************
consensus_8155#0 CCAAGACGGTGGAGTTCTTTGAAGGTGATGTTGATCATTCATATGCGGTTGCTATCGCCC 491
consensus_8155#1 CCAAGACGGTGGAGTTCTTTGAAGGTGATGTTGATCATTCATATGCGGTTGCTATCGCCC 660
************************************************************
consensus_8155#0 CTGAGTCAAAATATTCCGTACACAACATGCCCGGTTTTATTATACATAGGTCACTTGAAG 551
consensus_8155#1 CTGAGTCAAAATATTCCGTACACAACATGCCCGGTTTTATTATACATAGGTCACTTGAAG 720
************************************************************
consensus_8155#0 CAGCAAGCGATAGCTCTGAAAGTGTGTACAAAGGTTCTGAGGATTATTTCACTTTCGCAT 611
consensus_8155#1 CAGCAAGCGATAGCTCTGAGAGTGTGTACAAAGGTTCTGAGGA----------------- 763
******************* ***********************
consensus_8155#0 GCCGATATGGAGACACAAGTCCGAACCTTGTGAGCAGATTAATCACAGGTCCAGTTTTTA 671
consensus_8155#1 ------------------------------------------------------------
consensus_8155#0 ATCTGAATGGGCAAGTTTTAGGGATCGTTGTTGATGATATTGAGTATAAATTCTGGCCCA 731
consensus_8155#1 ------------------------------------------------------------
consensus_8155#0 AGAAGCCCAGGAAGGAAGATGGTAGTCAAGAGATTATTCATGAAGATCTTTTCTATCGCG 791
consensus_8155#1 ------------------------------------------------------------
consensus_8155#0 CTGGATATTTCTTAAAGGTTGCTATGCGTGTTAACAACCTTCAGCAAGACTTGAGGTCGA 851
consensus_8155#1 ------------------------------------------------------------
consensus_8155#0 TGGTAAAAGACAATGACTGGCAGAATGGTCTGAAGAAAATAGCTACTGAAAGAAGAGTGT 911
consensus_8155#1 ------------------------------------------------------------
consensus_8155#0 AACAGCAAAAAGGAGCATGATTCCTGAGATGAACAGTAATAGTTTTTGGTCGCGATCCCT 971
consensus_8155#1 ------------------------------------------------------------
consensus_8155#0 AAACTGTTTCTGCTGTAGTTTAGTTGTCTGCTAAGTACTTTGGCTTGAATCAGTCATATT 1031
consensus_8155#1 ------------------------------------------------------------
consensus_8155#0 TAATCGTACTGTAAGACTTTATTTGTCGCAAAGTGTTGGCTCTGCAGACTTTATATGTTT 1091
consensus_8155#1 ------------------------------------------------------------
consensus_8155#0 TCATTCGTACCGATCGGTTGTAATTAATTTATCAGACTTGAGGTCTTTTGTTTGGAAAAA 1151
consensus_8155#1 ------------------------------------------------------------
consensus_8155#0 GTTCATTTTTGTCTTAATTATCACCAAATTCAAATAAAAAAAAAAAAAAAAAA 1204
consensus_8155#1 -----------------------------------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||