These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8158#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 1234 fasta sequence [CGCCCCCCACCCCACTCCGCATATAGCCCTTCTTTTGTTGGTAGCATCGCCGGCGAGGCCAACCGGATTCGCGACGCGAGCGCGAGGCTCATCACCGACGGCGGCGCCCGCAACCGCGGGAGCGATCCCCTCTCCCCCCGCCGCCCGGCCTGCGGAGAGTAGGGACTCCCTCCCTCTCTCTCTCTCCGGAAGTGCACTGGCTGTAGATCGTCAGTCAAGACAACAGTTTATTGGTCAGCGGAGCGGGCTAGAGCAATGTTCTCCCTGGCGTATGGTCTATGGAAGTACATCTTTAACAAGACAGAGTTTCATGTTCTTATTCTAGGTGTTGACAAGGCTGGCAAAACGACTTTGCTCGAAAAGATAAAATCGATTTATCTGAAAGGAGAAGGGCTTACACCTGATCGCATCGTTCCCACTGTTGGACTTAATATTGGCCGTATTGAAGATGCAAATGCAAAGCTTGTTTTCTGGGATCTGGGAGGTCAGGTTGGACTTCGCACAATCTGGGAAAAATATTATCAAGAGGCCCATGCTATAATATATGTTATTGATGCTGCCGCTGCATCATCATTTGAAGATGCCAAATCTGCTCTAGAAAAGGTTCTTCGTCACGAGGATCTTAAAGGGGCACCGCTGCTGATATTTGCAAACAAACAGGATTTGCCAGGGGTCATCACTGATGAAGAATTAGCTAGATATCTGCAGCTTAAAGAGCTAGATGAGAGGCCGTACA-AGTTTCAAGCTGTATCTGCCTATGATGGGAGGGGGAT-CAAATCTGGCATAGATTGGGTGGTGGAACAGATGGAAAGAAGTAAACGCACTGAAGTTCTGAGGGCGCGAGCA-GGCTTTACTGGGCAGATTTAGAATGTTGA-C-CCGCAGTTTTCAACAAAGATTTCGAGG-GAAAAAAAATTCAAGGCATTTGATTGAAAGGGCTTCTGTTACTTATGACAATATGCAGCTTGGCGGATTTCAGCGACTACATGGTTCATCCTTCCAGATGGCACACCAACAAAATTGTTTGCCCTTGTGCGTTGGTGAGTGAGGTGATTCGTTTGGTTTATGAGCATGGTATTCTGCTCTGTATCTAAAGATCCCCTTAGGAGTC--GTTCATATGATTGCTTTTTTTGATACATGGAAAGTGTCCGTATAGAGGAACCAGAGATCGTGCAACCTCTGTAATGTTCTTTGTGAATGGGAAAAAAAAAAGGTAAAGGAATCCATTGTAATTGGA] [+] EMBL AK071779 [CGCCCCCCACCCCACTCCGCATATAGCCCTTCTTTTGTTGGTAGCATCGCCGGCGAGGCCAACCGGATTCGCGACGCGAGCGCGAGGCTCATCACCGACGGCGGCGCCCGCAACCGCGGGAGCGATCCCCTCTCCCCCCGCCGCCCGGCCTGCGGAGAGTAGGGACTCCCTCCCTCTCTCTCTCTCCGGAAGTGCACTGGCTGTAGATCGTCAGTCAAGACAACAGTTTATTGGTCAGCGGAGCGGGCTAGAGCAATGTTCTCCCTGGCGTATGGTCTATGGAAGTACATCTTTAACAAGACAGAGTTTCATGTTCTTATTCTAGGTGTTGACAAGGCTGGCAAAACGACTTTGCTCGAAAAGATAAAATCGATTTATCTGAAAGGAGAAGGGCTTACACCTGATCGCATCGTTCCCACTGTTGGACTTAATATTGGCCGTATTGAAGATGCAAATGCAAAGCTTGTTTTCTGGGATCTGGGAGGTCAGGTTGGACTTCGCACAATCTGGGAAAAATATTATCAAGAGGCCCATGCTATAATATATGTTATTGATGCTGCCGCTGCATCATCATTTGAAGATGCCAAATCTGCTCTAGAAAAGGTTCTTCGTCACGAGGATCTTAAAGGGGCACCGCTGCTGATATTTGCAAACAAACAGGATTTGCCAGGGGTCATCACTGATGAAGAATTAGCTAGATATCTGCAGCTTAAAGAGCTAGATGAGAGGCCGTACA AGTTTCAAGCTGTATCTGCCTATGATGGGAGGGGGAT CAAATCTGGCATAGATTGGGTGGTGGAACAGATGGAAAGAAGTAAACGCACTGAAGTTCTGAGGGCGCGAGCA GGCTTTACTGGGCAGATTTAGAATGTTGA C CCGCAGTTTTCAACAAAGATTTCGAGG GAAAAAAAATTCAAGGCATTTGATTGAAAGGGCTTCTGTTACTTATGACAATATGCAGCTTGGCGGATTTCAGCGACTACATGGTTCATCCTTCCAGATGGCACACCAACAAAATTGTTTGCCCTTGTGCGTTGGTGAGTGAGGTGATTCGTTTGGTTTATGAGCATGGTATTCTGCTCTGTATCTAAAGATCCCCTTAGGAGTC GTTCATATGATTGCTTTTTTTGATACATGGAAAGTGTCCGTATAGAGGAACCAGAGATCGTGCAACCTCTGTAATGTTCTTTGTGAATGGGAAAAAAAAAAGGTAAAGGAATCCATTGTAATTGGA] [+] EMBL CB663853 [ CCTCTCCCCCCGCCGCCCGGCCTGCGGAGAGTAGGGACTCCCTCCCTCTCTCTCTCTCCGGAAGTGCACTGGCTGTAGATCGTCAGTCAAGACAACAGTTTATTGGTCAGCGGAGCGGGCTAGAGCAATGTTCTCCCTGGCGTATGGTCTATGGAAGTACATCTTTAACAAGACAGAGTTTCATGTTCTTATTCTAGGTGTTGACAAGGCTGGCAAAACGACTTTGCTCGAAAAGATAAAATCGATTTATCTGAAAGGAGAAGGGCTTACACCTGATCGCATCGTTCCCACTGTTGGACTTAATATTGGCCGTATTGAAGATGCAAATGCAAAGCTTGTTTTCTGGGATCTGGGAGGTCAGGTTGGACTTCGCACAATCTGGGAAAAATATTATCAAGAGGCCCATGCTATAATATATGTTATTGATGCTGCCGCTGCATCATCATTTGAAGATGCCAAATCTGCTCTAGAAAAGGTTCTTCGTCACGAGGATCTTAAAGGGGCACCGCTGCTGATATTTGCAAACAAACAAGATTTGCCAGGGGTCATCACTGATGAAGAATTAGCTA ] [-] EMBL CB663854 [ ACTTCGCACAATCTGGGAAAAATATTATCAAGAGGCCCATGCTATAATATATGTTATTGATGCTGCCGCTGCATCATCATTTGAAGATGCCAAATCTGCTCTAGAAAAGGTTCTTCGTCACGAGGATCTTAAAGGGGCACCGCTGCTGATATTTGCAAACAAACAGGATTTGCCAGGGGTCATCACTGATGAAGAATTAGCTAGATATCTGCAGCTTAAAGAGCTAGATGAGAGGCCGTACA AGTTTCAAGCTGTATCTGCCTATGATGGGAGGGGGAT CAAATCTGGCATAGATTGGGTGGTGGAACAGATGGAAAGAAGTAAACGCACTGAAGTTCTGAGGGCGCGAGCA GGCTTTACTGGGCAGATTTAGAATGTTGA C CCGCAGTTTTCAACAAAGATTTCGAGG GAAAAAAAATTCAAGGCATTTGATTGAAAGGGCTTCTGTTACTTATGACAATATGCAGCTTGGCGGATTTCAGCGACTACATGGTTCATCCTTCCAGATGGCACACCAACAAAATTGTTTGCCCTTGTGCGTTGGTGAGTGAGGTGATTCGTTTGGTTTATGAGCATGGTATTCTGCTCTGTATCTAAAGATCCCCTTAGGAGTC GTTCATATGATTGCTTTTTTTGATACATGGAAAGTGTCCGTATAGAGGAACCAGAGATCGTGCAACCTCTGTA ] [-] EMBL CB645427 [ ATCAAGAGGCCCATGCTATAATATATGTTATTGATGCTGCCGCTGCATCATCATTTGAAGATGCCAAATCTGCTCTAGAAAAGGTTCTTCGTCACGAGGATCTTAAAGGGGCACCGCTGCTGATATTTGCAAACAAACAGGATTTGCCAGGGGTCATCATTGATGAAGAATTAGCTAGATATCTGCAGCTTAAAGAGCTAGATGAGAGGCCGTCCA AGTTTCAAGCTGTATCTGCCTATGATGGGAGGGGGAT CAAATCTGGCATAGATTGGGTGGTGGAACAGATGGAAAGAAGTAAATGCACTGAAGTTTTGAGGGCGCGAGCA GGCTTTACTGGGCAGATTTAGAATGTTGA CGCCGCAGTTTTCACCAAAGATTTTGAGG GAAAAAAAATTCAAGGCATTTGATTGAAAGGGCTTTTGTTACTTATGACAATATGCAGCTTGGCGGATTTCAGCGAATACATGGTTCATCCTTCCAGATGGCACCCCAACAAAATTGTTTTCCCTCATGCGTTGGTGAGTGAGGTGATTCGTT ] [+] EMBL BI805061 [ AGATGAGAGCCCGTACACAGTTTCACACTGTATCTGCCTATGATGGGAGGGGGATCCAAATCTGGCATAGATTGGGTGGTGGAACAGATGGAAAGAAGTAAACGC CTGAAGTTCTGAGGGCGCGA CACGGCTTAACTGGGCAGATTTAGAATGTTGACC CCGCAGTTTTCCACCAAGATTTCGAGGAAAAAAAAAATTCAAGGCATTTGATTGAAAGGGCTTCTGTTACTTATGACCATATGCAGCTTGGCGGATTTCAGCGACTACATGGTTCATCCTTCCAGATGGCACACC AC AAATTGTTTGCCCTTGTGCGTTGGTGAGTGAGGTGATTCGTTTGGTTTATGAGCATGGTATTCTTCTCTGTATCTAAAGATCCCCTTAGGAGTCGTGTTCATATGATTGCTTTTTTTGATACATGGAAAGTGTCCGTATAGAGGAACCAGAGATCGTGC ACCTCTGTAATGTTCTTTGTGAATGGGAAAAAAAAAAGGTAAAGGAATCCTTTGTAAaaa ] clustalw multiple alignements is not computed in this case |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||