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Oryza sativa
cluster # 8172 cluster # 8172       Sequences # 5       consensus # 1


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_8172#0 length = 2507 sequences # 5  

consensusID : consensus_8172#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 5
consensus length = 2507
fasta sequence
                              [TTTCGCACAACAGAATACCAGCAAAGAATCCAAGATTATCCAGGCATCGCTCATGAAACCATTCATCCACAGAGCAGCTGCTTTGCTATGTCTCGCCGTAGCAACTGCGGTGTGTCTCTCCTCCGTCACAGCGATGTCCTGCCAGAGAAAATGCGGTGACATCGAAGTTCCTTTTCCATTCGGCATAGACGGTGATCAGCCTGGCTGTGCCAAGCCGGGCTTTGAGCTGAGCTGCGGCAACAACACGGAGAGTGGTGTACCGATTCTCCTCCGCAAAGTGCAGCCCCTTAGCAGGAGCGTGGAGGTGCTCGGCATCTCCTTGCCGAAAGGCCAGCTCCGGATGAGGATGCATATGTCCTCTCACTGCTACAACATGACCACTCGTGTCATGGACTGCGTCGACAACGGGTGGATGGACTTGACGGGGAGTCCCTTCACCTTCTCCGACAGCGCGAACAAGTTCACGGCCTTTGGGTGCCAAGTTCTTGCATATCTTGGGGCGGGCGAACAGAGGGACATAGGAAGCAACCTAAGAATTGGCTGCGCGGCCAGTTGTGGCAAGGATGATTCTGCCACTATCGGTGGTGGTAGATGCTCTGGGATAGGCTGCTGCCAGACGGCTATCCCAAAGGGGATAAAGTATTATAAGGCATGGTTTGATGACCGCTTCAACACGTCTTCCATGTACACATGGAACCGTTGTGCCTATGCAGCGCTCGTGGAGGAGTCCAGCTTCAATTTCTCCATGATTTACGATTCATCATCGAAGTTCAACAGCGATACCGTCTCTAGTCAGCCGCCGTTTGTGGTTGACTGGGTTATGGGAAATATATCATGCAAAGAAGCTCGTAAAAATCTAGGTACCTACCCATGCATCAGCAACAACAGCATTTGTTTGGACTCACAGAATGGACCGGGTTACATTTGCAACTGCAGAAAGGGGTTCCAGGGTAACCCTTACAATAAAGGTCTTGACAGCTGCCAAGATATTAATGAGTGTGACGATCCTAAGAAGTACCCCTGCTATGGTAAATGCATTAACAAACTTGGAGGATTTGATTGTTTCTGCCCTGCGGGAATGAGAGGAAATGCATCTGTTGGACCATGCCGGAAAGATTTCCCACTGGGAATTGGTATTGCAATTGGTTTGGGTGTTGGTTTCGGAATTCTCCTACTTAGCTTGTCTGTGGTGTTTCTTATCCGTAAACAGAGAAGCGACATCCAAAGGCAACTACGGAAAAAATATTTTCAGAAAAACAAAGGCCTTCTACTAGAACAACTAATATCTTCTGACGAAAGAGCTAGCGATAGCACAAAAATTTTCTCCCTAGAAGAGCTTAAAGAGGCAACTAATAACTTTGACCCAACACGTGTTCTCGGTAGTGGAGGTCATGGTATGGTTTACAAAGGTATCTTATCTGATCAACGTGTGGTGGCGATAAAAAAACCAAACATCATCAGGGAAGAGGAGATTAGCCAGTTTATCAATGAGGTTGTAATTCTCTCACAAATAAATCATCGCCATATTGTCAAACTCTTTGGATGCTGTCTTGAAACTGAAGTCCCTCTATTAGTGTATGATTTTGTACCTAATGGTTCACTAAATCAAATTATTCATGCTGATAAAAGTAACAGACGTTTCTCATTGTCCTGGGATGATTGTTTGCGAATTGCTACAGAAGCAGCAGGTGCTTTATATTACCTCCACTCTGCAGCATCGGTATCAGTTCTACATCGTGATGTGAAATCATCTAATATACTCTTGGATTCAAACTACACCGCTAAAGTTTCAGATTTTGGAGCTTCAAGATTGATTCCGAATGACCAAACCCATGTTTTCACAAATATACAAGGGACATTTGGATATTTAGATCCTGAGTACTACCATACTGGGCATCTCAATGAGAAAAGTGATGTGTATAGTTTTGGTGTAGTTCTTTTAGAGCTGCTTCTAAGAAGGCAACCTATTTTTGACGATGGCACTGGCACAAAGAAAAATCTATCAATATATTTTCTTTCTGAGATAAAAGGAAAGCCTATTACAGAGATAGTTGCCCCTGAAGTTATTAAGGAAGCAATAGAGGATGAGATTAATATTTTTGCCTCAATTGCACAGGCATGCTTGAGGCTCCGAGGTGAAGAAAGGCCAACAATGAAGCAAGTGGAGATATCATTACAGTCTATAAGAAACAAAGTTTTGAGTTCAGGCAGCGCTAGTTCCGAAAGCAACCATGAGATAGAAACACCCTTATGTGAAAGTTACGTTGATCTGCATCAAACTATGGGTGTTGATATCAATGGCATTGCTAATTTAATATCTTCAAATTGCTATAGCTTAGAGCATGAATTTATGTTATCCGCTAGCTTTGGAAGGTAAATTGTGTTTGTCCCGTTGTTGAAATGTCGATAGATGTTCTTATAGTATCTTTGTGCATTTGCACAATCTATAAGCTTGTCATAAACAGAAATGTTGAATATACATTTGTGATACATCATTAAAAAAAAGG]

[+] EMBL AK111580             [TTTCGCACAACAGAATACCAGCAAAGAATCCAAGATTATCCAGGCATCGCTCATGAAACCATTCATCCACAGAGCAGCTGCTTTGCTATGTCTCGCCGTAGCAACTGCGGTGTGTCTCTCCTCCGTCACAGCGATGTCCTGCCAGAGAAAATGCGGTGACATCGAAGTTCCTTTTCCATTCGGCATAGACGGTGATCAGCCTGGCTGTGCCAAGCCGGGCTTTGAGCTGAGCTGCGGCAACAACACGGAGAGTGGTGTACCGATTCTCCTCCGCAAAGTGCAGCCCCTTAGCAGGAGCGTGGAGGTGCTCGGCATCTCCTTGCCGAAAGGCCAGCTCCGGATGAGGATGCATATGTCCTCTCACTGCTACAACATGACCACTCGTGTCATGGACTGCGTCGACAACGGGTGGATGGACTTGACGGGGAGTCCCTTCACCTTCTCCGACAGCGCGAACAAGTTCACGGCCTTTGGGTGCCAAGTTCTTGCATATCTTGGGGCGGGCGAACAGAGGGACATAGGAAGCAACCTAAGAATTGGCTGCGCGGCCAGTTGTGGCAAGGATGATTCTGCCACTATCGGTGGTGGTAGATGCTCTGGGATAGGCTGCTGCCAGACGGCTATCCCAAAGGGGATAAAGTATTATAAGGCATGGTTTGATGACCGCTTCAACACGTCTTCCATGTACACATGGAACCGTTGTGCCTATGCAGCGCTCGTGGAGGAGTCCAGCTTCAATTTCTCCATGATTTACGATTCATCATCGAAGTTCAACAGCGATACCGTCTCTAGTCAGCCGCCGTTTGTGGTTGACTGGGTTATGGGAAATATATCATGCAAAGAAGCTCGTAAAAATCTAGGTACCTACCCATGCATCAGCAACAACAGCATTTGTTTGGACTCACAGAATGGACCGGGTTACATTTGCAACTGCAGAAAGGGGTTCCAGGGTAACCCTTACAATAAAGGTCTTGACAGCTGCCAAGATATTAATGAGTGTGACGATCCTAAGAAGTACCCCTGCTATGGTAAATGCATTAACAAACTTGGAGGATTTGATTGTTTCTGCCCTGCGGGAATGAGAGGAAATGCATCTGTTGGACCATGCCGGAAAGATTTCCCACTGGGAATTGGTATTGCAATTGGTTTGGGTGTTGGTTTCGGAATTCTCCTACTTAGCTTGTCTGTGGTGTTTCTTATCCGTAAACAGAGAAGCGACATCCAAAGGCAACTACGGAAAAAATATTTTCAGAAAAACAAAGGCCTTCTACTAGAACAACTAATATCTTCTGACGAAAGAGCTAGCGATAGCACAAAAATTTTCTCCCTAGAAGAGCTTAAAGAGGCAACTAATAACTTTGACCCAACACGTGTTCTCGGTAGTGGAGGTCATGGTATGGTTTACAAAGGTATCTTATCTGATCAACGTGTGGTGGCGATAAAAAAACCAAACATCATCAGGGAAGAGGAGATTAGCCAGTTTATCAATGAGGTTGTAATTCTCTCACAAATAAATCATCGCCATATTGTCAAACTCTTTGGATGCTGTCTTGAAACTGAAGTCCCTCTATTAGTGTATGATTTTGTACCTAATGGTTCACTAAATCAAATTATTCATGCTGATAAAAGTAACAGACGTTTCTCATTGTCCTGGGATGATTGTTTGCGAATTGCTACAGAAGCAGCAGGTGCTTTATATTACCTCCACTCTGCAGCATCGGTATCAGTTCTACATCGTGATGTGAAATCATCTAATATACTCTTGGATTCAAACTACACCGCTAAAGTTTCAGATTTTGGAGCTTCAAGATTGATTCCGAATGACCAAACCCATGTTTTCACAAATATACAAGGGACATTTGGATATTTAGATCCTGAGTACTACCATACTGGGCATCTCAATGAGAAAAGTGATGTGTATAGTTTTGGTGTAGTTCTTTTAGAGCTGCTTCTAAGAAGGCAACCTATTTTTGACGATGGCACTGGCACAAAGAAAAATCTATCAATATATTTTCTTTCTGAGATAAAAGGAAAGCCTATTACAGAGATAGTTGCCCCTGAAGTTATTAAGGAAGCAATAGAGGATGAGATTAATATTTTTGCCTCAATTGCACAGGCATGCTTGAGGCTCCGAGGTGAAGAAAGGCCAACAATGAAGCAAGTGGAGATATCATTACAGTCTATAAGAAACAAAGTTTTGAGTTCAGGCAGCGCTAGTTCCGAAAGCAACCATGAGATAGAAACACCCTTATGTGAAAGTTACGTTGATCTGCATCAAACTATGGGTGTTGATATCAATGGCATTGCTAATT                                                                                                                                                                                                   ]
[+] EMBL CB633483             [                               AAGATTCTCCAGACATCGCTCATGAAACCATTCATCCACAGAGCAGCTGCTTTGCTATGTCTCGCCGTAGCAACTGCGGTGTGTCTCTCCTCCGTCACAGCGATGTCCTGCCAGAGAAAATGCGGTGACATCGAAGTTCCTTTTCCATTCGGCATAGACGGTGATCAGCCTGGCTGTGCCAAGCCGGGCTTTGAGCTGAGCTGCGGCAACAACACGGAGAGTGGTGTACCGATTCTCCTCCGCAAAGTGCAGCCCCTTAGCAGGAGCGTGGAGGTGCTCGGCATCTCGTTGCCGAAAGGCCAGCTCCGGATGAGGATGCATATGTCCTCTCACTGCTACAACATGACCACTCGTGTCATGGACTGCGTCGACAACGGGTGGATGGACTTGACGGGGAGTCCCTTCACCTTCTCCGACAGCGCGAACAAGTTCACGGCCTTTGGGTGCCAAGTTCTTGCATATCTTGGGGCGGGTGAACAGAGGGACATAGGAAGCAACCTAAGAATTGGCTGCGCGGCCAGTTGTGGCAAGGATGATTCTGCCACTATCGGTGGTGGTAGATGCTCTGGGATAGGCTGCTGCCAGACGGCTATCCCAAAGGGGATAAAGTATTATAAGGCATGGTTTGATGACCGCTTCAACACGTCTTCCATGTACACATGGAACCGTTGTGCCTATGCAGCGCTCGTGGAGGAGTCCAGCTTCAATTTCTCCATGATTTACGATTCATCATCGAAGTTCAACAGCGATACCGTCTCTAGTCAGCCGCCGTTTGTGGTTGACTGGGTTATGGGAAA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               ]
[-] EMBL CB674990             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               TTCCAGGGTAACCCTTACAATAAAGGTCTTGACAGCTGCCAAGATATTAATGAGTGTGACGATCCTAAGAAGTACCCCTGCTATGGTAAATGCATTAACAAACTTGGAGGATTTGATTGTTTCTGCCCTGCGGGAATGAGAGGAAATGCATCTGTTGGACCATGCCGGAAAGATTTCCCACTGGGAATTGGTATTGCAATTGGTTTGGGTGTTGGTTTCGGAATTCTCCTACTTAGCTTGTCTGTGGTGTTTCTTATCCGTAAACAGAGAAGCGACATCCAAAGGCAACTACGGAAAAAATATTTTCAGAAAAACAAAGGCCTTCTACTAGAACAACTAATATCTTCTGACGAAAGAGCTAGCGATAGCACAAAAATTTTCTCCCTAGAAGAGCTTAAAGAGGCAACTAATAACTTTGACCCAACACGTGTTCTCGGTAGTGGAGGTCATGGTATGGTTTACAAAGGTATCTTATCTGATCAACGTGTGGTGGCGATAAAAAAACCAAACATCATCAGGGAAGAGGAGATTAGCCAGTTTATCAATGAGGTTGTAATTCTCTCACAAATAAATCATCGCCATATTGTCAAACTCTTTGGATGCTGTCTTGAAACTGAAGTCCCTCTATTAGTGTATGATTTTGTACCTAATGGTTCACTAAATCAAATTATTCATGCTGATAAAAGTAACAGACGTTT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  ]
[+] EMBL CB674989             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       TAACCCTTACAATAAAGGTCTTGACAGCTGCCAAGATATTAATGAGTGTGACGATCCTAAGAAGTACCCCTGCTATGGTAAATGCATTAACAAACTTGGAGGATTTGATTGTTTCTGCCCTGCGGGAATGAGAGGAAATGCATCTGTTGGACCATGCCGGAAAGATTTCCCACTGGGAATTGGTATTGCAATTGGTTTGGGTGTTGGTTTCGGAATTCTCCTACTTAGCTTGTCTGTGGTGTTTCTTATCCGTAAACAGAGAAGCGACATCCAAAGGCAACTACGGAAAAAATATTTTCAGAAAAACAAAGGCCTTCTACTAGAACAACTAATATCTTCTGACGAAAGAGCTAGCGATAGCACAAAAATTTTCTCCCTAGAAGAGCTTAAAGAGGCAACTAATAACTTTGACCCAACACGTGTTCTCGGTAGTGGAGGTCATGGTATGGTTTACAAAGGTATCTTATCTGATCAACGTGTGGTGGCGATAAAAAAACCAAACATCATCAGGGAAGAGGAGATTAGCCAGTTTATCAATGAGGTTGTAATTCTCTCACAAATAAATCATCGCCATATTGTCAAACTCTTTGGATGCTGTCTTGAAACTGAAGTCCCTCTATTAGTGTATGATTTTGTACCTAATGGTTCACTAAATCAAATTATTCATGCTGATAAAAGTAACA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                         ]
[-] EMBL CB633484             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                             TTATATTACCTCCACTCTGCAGCATCGGTATCAGTTCTACATCGTGATGTGAAATCGTCTAATATACTCTTGGATTCAAACTACACCGCTAAAGTTTCAGATTTTGGAGCTTCAAGATTGATTCCGAATGACCAAACCCATGTTTTCACAAATATACAAGGGACATTTGGATATTTAGATCCTGAGTACTACCATACTGGGCATCTCAATGAGAAAAGTGATGTGTATAGTTTTGGTGTAGTTCTTTTAGAGCTGCTTCTAAGAAAGCAACCTATTTTTGACGATGGCACTGGCACAAAGAAAAATCTATCAATATATTTTCTTTCTGAGATAAAAGGAAAGCCTATTACAGAGATAGTTGCCCCTGAAGTTATTAAGGAAGCAATAGAGGATGAGATTAATATTTTTGCCTCAATTGCACAGGCATGCTTGAGGCTCCGAGGTGAAGAAAGGCCAACAATGAAGCAAGTGGAGATATCATTACAGTCTATAAGAAACAAAGTTTTGAGTTCAGGCAGCGCTAGTTCCGAAAGCAACCATGAGATAGAAACACCCTTATGTGAAAGTTACGTTGATCTGCATCAAACTATGGGTGTTGATATCAATGGCATTGCTAATTTAATATCTTCAAATTGCTATAGCTTAGAGCATGAATTTATGTTATCCGCTAGCTTTGGAAGGTAAATTGTGTTTGTCCCGTTGTTGAAATGTCGATAGATGTTCTTATAGTATCTTTGTGCATTTGCACAATCTATAAGCTTGTCATAAACAGAAATGTTGAATATACATTTGTGATACATCATTAAAAAAAAGG]


>consensus_8172#0 TTTCGCACAACAGAATACCAGCAAAGAATCCAAGATTATCCAGGCATCGCTCATGAAACC ATTCATCCACAGAGCAGCTGCTTTGCTATGTCTCGCCGTAGCAACTGCGGTGTGTCTCTC CTCCGTCACAGCGATGTCCTGCCAGAGAAAATGCGGTGACATCGAAGTTCCTTTTCCATT CGGCATAGACGGTGATCAGCCTGGCTGTGCCAAGCCGGGCTTTGAGCTGAGCTGCGGCAA CAACACGGAGAGTGGTGTACCGATTCTCCTCCGCAAAGTGCAGCCCCTTAGCAGGAGCGT GGAGGTGCTCGGCATCTCCTTGCCGAAAGGCCAGCTCCGGATGAGGATGCATATGTCCTC TCACTGCTACAACATGACCACTCGTGTCATGGACTGCGTCGACAACGGGTGGATGGACTT GACGGGGAGTCCCTTCACCTTCTCCGACAGCGCGAACAAGTTCACGGCCTTTGGGTGCCA AGTTCTTGCATATCTTGGGGCGGGCGAACAGAGGGACATAGGAAGCAACCTAAGAATTGG CTGCGCGGCCAGTTGTGGCAAGGATGATTCTGCCACTATCGGTGGTGGTAGATGCTCTGG GATAGGCTGCTGCCAGACGGCTATCCCAAAGGGGATAAAGTATTATAAGGCATGGTTTGA TGACCGCTTCAACACGTCTTCCATGTACACATGGAACCGTTGTGCCTATGCAGCGCTCGT GGAGGAGTCCAGCTTCAATTTCTCCATGATTTACGATTCATCATCGAAGTTCAACAGCGA TACCGTCTCTAGTCAGCCGCCGTTTGTGGTTGACTGGGTTATGGGAAATATATCATGCAA AGAAGCTCGTAAAAATCTAGGTACCTACCCATGCATCAGCAACAACAGCATTTGTTTGGA CTCACAGAATGGACCGGGTTACATTTGCAACTGCAGAAAGGGGTTCCAGGGTAACCCTTA CAATAAAGGTCTTGACAGCTGCCAAGATATTAATGAGTGTGACGATCCTAAGAAGTACCC CTGCTATGGTAAATGCATTAACAAACTTGGAGGATTTGATTGTTTCTGCCCTGCGGGAAT GAGAGGAAATGCATCTGTTGGACCATGCCGGAAAGATTTCCCACTGGGAATTGGTATTGC AATTGGTTTGGGTGTTGGTTTCGGAATTCTCCTACTTAGCTTGTCTGTGGTGTTTCTTAT CCGTAAACAGAGAAGCGACATCCAAAGGCAACTACGGAAAAAATATTTTCAGAAAAACAA AGGCCTTCTACTAGAACAACTAATATCTTCTGACGAAAGAGCTAGCGATAGCACAAAAAT TTTCTCCCTAGAAGAGCTTAAAGAGGCAACTAATAACTTTGACCCAACACGTGTTCTCGG TAGTGGAGGTCATGGTATGGTTTACAAAGGTATCTTATCTGATCAACGTGTGGTGGCGAT AAAAAAACCAAACATCATCAGGGAAGAGGAGATTAGCCAGTTTATCAATGAGGTTGTAAT TCTCTCACAAATAAATCATCGCCATATTGTCAAACTCTTTGGATGCTGTCTTGAAACTGA AGTCCCTCTATTAGTGTATGATTTTGTACCTAATGGTTCACTAAATCAAATTATTCATGC TGATAAAAGTAACAGACGTTTCTCATTGTCCTGGGATGATTGTTTGCGAATTGCTACAGA AGCAGCAGGTGCTTTATATTACCTCCACTCTGCAGCATCGGTATCAGTTCTACATCGTGA TGTGAAATCATCTAATATACTCTTGGATTCAAACTACACCGCTAAAGTTTCAGATTTTGG AGCTTCAAGATTGATTCCGAATGACCAAACCCATGTTTTCACAAATATACAAGGGACATT TGGATATTTAGATCCTGAGTACTACCATACTGGGCATCTCAATGAGAAAAGTGATGTGTA TAGTTTTGGTGTAGTTCTTTTAGAGCTGCTTCTAAGAAGGCAACCTATTTTTGACGATGG CACTGGCACAAAGAAAAATCTATCAATATATTTTCTTTCTGAGATAAAAGGAAAGCCTAT TACAGAGATAGTTGCCCCTGAAGTTATTAAGGAAGCAATAGAGGATGAGATTAATATTTT TGCCTCAATTGCACAGGCATGCTTGAGGCTCCGAGGTGAAGAAAGGCCAACAATGAAGCA AGTGGAGATATCATTACAGTCTATAAGAAACAAAGTTTTGAGTTCAGGCAGCGCTAGTTC CGAAAGCAACCATGAGATAGAAACACCCTTATGTGAAAGTTACGTTGATCTGCATCAAAC TATGGGTGTTGATATCAATGGCATTGCTAATTTAATATCTTCAAATTGCTATAGCTTAGA GCATGAATTTATGTTATCCGCTAGCTTTGGAAGGTAAATTGTGTTTGTCCCGTTGTTGAA ATGTCGATAGATGTTCTTATAGTATCTTTGTGCATTTGCACAATCTATAAGCTTGTCATA AACAGAAATGTTGAATATACATTTGTGATACATCATTAAAAAAAAGG



clustalw multiple alignements is not computed in this case


Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)