These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8180#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 1591 fasta sequence [ATAAAGAAAAATTCATTCTTCTTCTCCTTCTCCTTCTTCTCTTCTTGGAGGATATTTCTTCCCCCTCCGTCTCCGGCGCCGATCTGCATCCACCCGCCGAGCAGAGACCAGCGCCGCCGCCGCCGCCGTCCGTTCCTCCTGTATCGCGTCCTGAAATTTCTTTTTTTCTGGGATGTCCGACGTTGGAGACGCCCCTGTGCAGCGCCGCTCTTGTTCGAATCCGGCCGGTGGTCTGTAGGATTGGGCGGCTGCGGCGGCGGCGAGATGGACGACGACGCCAGCATGAGCATAAGATGGGGGGGATTCTTCGAGTCGCCGGCGAGGAACCTCGGCCTGCAGCTCATGTCGTCGGTGCCTGCTGAGCGTGACACCAAGCAGCTGCTCTCTGGTAGCCCCTTCCTGCATCATCAGCATCAGCAGCATGTCCCGCACCACCACCATCAGCCCCATCACCCGCGTGACTGCGGCGCCAATGGCAATGCCAATGGTGGTGCTATGCCTCCTCCTCCTGCCACGGAGGCTCCCCCTTCAATGCCGATGAACTTCGCGCGCAGTGACATGTGGATGCACCCGCAACAGCAGCAGCAACATCATCATCCCCGCGAGCACAAGGCTCTTCACAATCTCACTGTTGGCCATGGTTCTTCGCACATTGCGCATCATGACCCAGTGGGCTATGGGATGATCCCCGGTACGCATACCCTGCAGATGATGCAGCAGCAAACAGAGCCTCAACTGCAACCCCCACCACCGCCTCAGCAGCCAAAAGAGGAATGCATTTCCTCGCCATTGATCGAGGAAAATGTACCTGTTATTGATGAGCCACCACCTCCCAAGAAGCGGCAGCAGGGCCGCCAACCCAAGGTACCAAGGGCTAAGAAGCCCAAGAAGTCTGCTGCTCCTCGTGAGGATGGCGCACCACCCAATGCACCAGCACCACGGAGAAGGGGTCCCAGGAAGAATATAGGGATGGTAATTAATGGTATTGATTTGGACCTCTCAAGGATACCAACGCCCATTTGTTCTTGCACGGGCGCACCACAGCAGTGCTATCGGTGGGGTGCAGGTGGTTGGCAATCTGCGTGCTGCACAACCACCATCTCAACGTACCCACTGCCAATGAGTACGAAGCGCCGTGGTGCACGAATCGCAGGCAGGAAGATGAGCCATGGTGCGTTCAAGAAAGTACTTGAGAAGCTTGCTGGTGAAGGTTATAATCTTAATAATCCGATTGACCTGAAGACCTTCTGGGCGAAGCATGGAACAAACAAGTTTGTTACCATAAGGTAAAAGACAATGAAATTCTAAAATTTGTTGGCTTTGTAGGTTGCTCTGCAGCTGTTTGGTCTGAGTAATTGTCTGTATGTACTCTAGATTACAAACTGCAGAATCCTTTTAGGTGTAGGTTTTAGGCATGTCCTGTCCCTTTGCAGTAGTTTACATGCCTCATCTGTGACCTGGGTGCTGACCTGTATGGTGGCTATCTGCATGTATCTTTGTCATTATCTTTACAAGTAGCAGTGTAATGCGACAATCTCTAATTTAGGTGGCATGAAAGTTAATCTGTTCAACGTTTCTCATTAAAAAAAAA] [+] EMBL AK063643 [ATAAAGAAAAATTCATTCTTCTTCTCCTTCTCCTTCTTCTCTTCTTGGAGGATATTTCTTCCCCCTCCGTCTCCGGCGCCGATCTGCATCCACCCGCCGAGCAGAGACCAGCGCCGCCGCCGCCGCCGTCCGTTCCTCCTGTATCGCGTCCTGAAATTTCTTTTTTTCTGGGATGTCCGACGTTGGAGACGCCCCTGTGCAGCGCCGCTCTTGTTCGAATCCGGCCGGTGGTCTGTAGGATTGGGCGGCTGCGGCGGCGGCGAGATGGACGACGACGCCAGCATGAGCATAAGATGGGGGGGATTCTTCGAGTCGCCGGCGAGGAACCTCGGCCTGCAGCTCATGTCGTCGGTGCCTGCTGAGCGTGACACCAAGCAGCTGCTCTCTGGTAGCCCCTTCCTGCATCATCAGCATCAGCAGCATGTCCCGCACCACCACCATCAGCCCCATCACCCGCGTGACTGCGGCGCCAATGGCAATGCCAATGGTGGTGCTATGCCTCCTCCTCCTGCCACGGAGGCTCCCCCTTCAATGCCGATGAACTTCGCGCGCAGTGACATGTGGATGCACCCGCAACAGCAGCAGCAACATCATCATCCCCGCGAGCACAAGGCTCTTCACAATCTCACTGTTGGCCATGGTTCTTCGCACATTGCGCATCATGACCCAGTGGGCTATGGGATGATCCCCGGTACGCATACCCTGCAGATGATGCAGCAGCAAACAGAGCCTCAACTGCAACCCCCACCACCGCCTCAGCAGCCAAAAGAGGAATGCATTTCCTCGCCATTGATCGAGGAAAATGTACCTGTTATTGATGAGCCACCACCTCCCAAGAAGCGGCAGCAGGGCCGCCAACCCAAGGTACCAAGGGCTAAGAAGCCCAAGAAGTCTGCTGCTCCTCGTGAGGATGGCGCACCACCCAATGCACCAGCACCACGGAGAAGGGGTCCCAGGAAGAATATAGGGATGGTAATTAATGGTATTGATTTGGACCTCTCAAGGATACCAACGCCCATTTGTTCTTGCACGGGCGCACCACAGCAGTGCTATCGGTGGGGTGCAGGTGGTTGGCAATCTGCGTGCTGCACAACCACCATCTCAACGTACCCACTGCCAATGAGTACGAAGCGCCGTGGTGCACGAATCGCAGGCAGGAAGATGAGCCATGGTGCGTTCAAGAAAGTACTTGAGAAGCTTGCTGGTGAAGGTTATAATCTTAATAATCCGATTGACCTGAAGACCTTCTGGGCGAAGCATGGAACAAACAAGTTTGTTACCATAAGGTAAAAGACAATGAAATTCTAAAATTTGTTGGCTTTGTAGGTTGCTCTGCAGCTGTTTGGTCTGAGTAATTGTCTGTATGTACTCTAGATTACAAACTGCAGAATCCTTTTAGGTGTAGGTTTTAGGCATGTCCTGTCCCTTTGCAGTAGTTTACATGCCTCATCTGTGACCTGGGTGCTGACCTGTATGGTGGCTATCTGCATGTATCTTTGTCATTATCTTTACAAGTAGCAGTGTAATGCGACAATCTCTAATTTAGGTGGCATGAAAGTTAATCTGTTCAAC ] [+] EMBL CA764737 [ AGAATATAGGGATGGTAATTAATGGTATTGATTTGGACCTCTCAAGGATACCAACGCCCATTTGTTCTTGCACGGGCGCACCACAGCAGTGCTATCGGTGGGGTGCAGGTGGTTGGCAATCTGCGTGCTGCACAACCACCATCTCAACGTACCCACTGCCAATGAGTACGAAGCGCCGTGGTGCACGAATCGCAGGCAGGAAGATGAGCCATGGTGCGTTCAAGAAGGTACTTGAGAAGCTTGCTGGTGAAGGTTATAATCTTAATAATCCGATTGACCTGAAGACCTTCTGGGCGAAGCATGGAACAAACAAGTTTGTTACCATAAGGTAAAAGACAATGAAATTATAAAATTTGTTGGCTTTGTAGGTTGCTCTGCAGCTGTTTGGTCTGAGTAATTGTCTGTATGTACTCTAGATTACAAACTGCAGAATCCTTTTAGGTGTAGGTTTTAGCCATGTCCTGTCCCTTCGCAGTAGTATACATGCCTCATCTGTGACCTGGGTGCTGACCTGTATGGTGGCTATCTGCATGTATCTTTATCATTATCTTTACAAGTAGCAGTGTAATGCGACAATCTCTAATTTAGGTGGCATGAAAGTTAATCTGNTC ] [+] EMBL AU032589 [ GGAACAAACAAGTTTGTTACCATAAGGTAAAAGACAATGAAATTCTAAAATTTGTTGGCTTTGTAGGTTGCTCTGCAGCTGTTTGGTCTGAGTAATTGTCTGTATGTACTCTAGATTACAAACTGCAGAATCCTTTTAGGTGTAGGTTTTAGGCATGTCCTGTCCCTTTGCAGTAGTTTACATGCCTCATCTGTGACCTGGGTGCTGACCTGTATGGTGGCTATCTGCATGTATCTTTGTCATTATCTTTACAAGTAGCAGTGTAATGCGACAATCTCTAATTTAGGTGGCATGAAAGTTAATCTGTTCAACGTTTCTCATTAAAAAAAAA] [+] EMBL OSS10906A [ nGAACAAACAAGTTTGTTACCATAAGGTAAAAGACAATGAAATTCTAAAATTTGTTGGCTTTGTAGGTTGCTCTGCAGCTGTTTGGTCTGAGTAATTGTCTGTATGTACTCTAGATTACAAACTGCAGAATCCTTTTAGGTGTAGGTTTTAGGCATGTCCTGTCCCTTTGCAGTAGTTTACATGCCTCATCTGTGACCTGGGTGCTGACCTGTATGGTGGCTATCTGCATGTATCTTTGTCATTATCTTTACAAGTAGCAGTGTAATGCGACAATCTCTAATTTAGGTGGCATGAAAGTTAATCTGTTCAAC ] consensusID : consensus_8180#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 687 fasta sequence [CATAAGCCTGGTTAGGTGAGCCAGAGGGCGAGCCAAGGGGTCCCATGAAGAATATAGGGATGGTGATTAATGGTATTGATTTGGCCCTCTCAAGGATACCAACACCCATTTGTACCTACACAGGCGCACCGCAGCAGTGCTATCGGTGGGGTGCTGGTGGTTGGCAATNTGCGTGNTGCNCAACCACCGTTCTCAACATACCCACTGCCAATGAATACAAAGCGTCATGGTGCACGAATCGCAGGCAGGAAGATGAGCCATGGAGCGTTCAAGAAAGTCCTTGAGAAGCTTGCTGGCAAAGGCTACAATCTTAATAATCCGATTGACCTAAAGACCTTCTGGGCGAAGCATGGAACAAACAAGTTTGTTACCATAATATAAGGTAAGAGACTAAAAGAAATTCTAAATTTGTTGGCTTTGTAGGTTCCTCTGCTGCTGTTTGGTCTGAGTAATTGTCTGTATGTACTCTAGATGACAAACTGCAGAATCCTTTTAGGTGTAGGTTTTATCCATGTCCTGTCCCTTTTGCAGTAGTTTACATGCCTCATCTGTGACCTAGGAACTTACCTGTATGGTGGCTATCTGCATGTATCTTTATCATTGTCTTCCCAAGTAGCAATGTAATGCGACAGTCTCTAATTTAAGTTGCAAAGTTAATCATTTGAATGTTAAAAAAAAAAAAAAAAA] [-] EMBL CA759113 [CATAAGCCTGGTTAGGTGAGCCAGAGGGCGAGCCAAGGGGTCCCATGAAGAATATAGGGATGGTGATTAATGGTATTGATTTGGCCCTCTCAAGGATACCAACACCCATTTGTACCTACACAGGCGCACCGCAGCAGTGCTATCGGTGGGGTGCTGGTGGTTGGCAATNTGCGTGNTGCNCAACCACCGTTCTCAACATACCCACTGCCAATGAATACAAAGCGTCATGGTGCACGAATCGCAGGCAGGAAGATGAGCCATGGAGCGTTCAAGAAAGTCCTTGAGAAGCTTGCTGGCAAAGGCTACAATCTTAATAATCCGATTGACCTAAAGACCTTCTGGGCGAAGCATGGAACAAACAAGTTTGTTACCATAATATAAGGTAAGAGACTAAAAGAAATTCTAAATTTGTTGGCTTTGTAGGTTCCTCTGCTGCTGTTTGGTCTGAGTAATTGTCTGTATGTACTCTAGATGACAAACTGCAGAATCCTTTTAGGTGTAGGTTTTATCCATGTCCTGTCCCTTTTGCAGTAGTTTACATGCCTCATCTGTGACCTAGGAACTTACCTGTATGGTGGCTATCTGCATGTATCTTTATCATTGTCTTCCCAAGTAGCAATGTAATGCGACAGTCTCTAATTTAAGTTGCAAAGTTAATCATTTGAATGTTAAAAAAAAAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_8180#0 ATAAAGAAAAATTCATTCTTCTTCTCCTTCTCCTTCTTCTCTTCTTGGAGGATATTTCTT 60 consensus_8180#1 ------------------------------------------------------------ consensus_8180#0 CCCCCTCCGTCTCCGGCGCCGATCTGCATCCACCCGCCGAGCAGAGACCAGCGCCGCCGC 120 consensus_8180#1 ------------------------------------------------------------ consensus_8180#0 CGCCGCCGTCCGTTCCTCCTGTATCGCGTCCTGAAATTTCTTTTTTTCTGGGATGTCCGA 180 consensus_8180#1 ------------------------------------------------------------ consensus_8180#0 CGTTGGAGACGCCCCTGTGCAGCGCCGCTCTTGTTCGAATCCGGCCGGTGGTCTGTAGGA 240 consensus_8180#1 ------------------------------------------------------------ consensus_8180#0 TTGGGCGGCTGCGGCGGCGGCGAGATGGACGACGACGCCAGCATGAGCATAAGATGGGGG 300 consensus_8180#1 ------------------------------------------------------------ consensus_8180#0 GGATTCTTCGAGTCGCCGGCGAGGAACCTCGGCCTGCAGCTCATGTCGTCGGTGCCTGCT 360 consensus_8180#1 ------------------------------------------------------------ consensus_8180#0 GAGCGTGACACCAAGCAGCTGCTCTCTGGTAGCCCCTTCCTGCATCATCAGCATCAGCAG 420 consensus_8180#1 ------------------------------------------------------------ consensus_8180#0 CATGTCCCGCACCACCACCATCAGCCCCATCACCCGCGTGACTGCGGCGCCAATGGCAAT 480 consensus_8180#1 ------------------------------------------------------------ consensus_8180#0 GCCAATGGTGGTGCTATGCCTCCTCCTCCTGCCACGGAGGCTCCCCCTTCAATGCCGATG 540 consensus_8180#1 ------------------------------------------------------------ consensus_8180#0 AACTTCGCGCGCAGTGACATGTGGATGCACCCGCAACAGCAGCAGCAACATCATCATCCC 600 consensus_8180#1 ------------------------------------------------------------ consensus_8180#0 CGCGAGCACAAGGCTCTTCACAATCTCACTGTTGGCCATGGTTCTTCGCACATTGCGCAT 660 consensus_8180#1 ------------------------------------------------------------ consensus_8180#0 CATGACCCAGTGGGCTATGGGATGATCCCCGGTACGCATACCCTGCAGATGATGCAGCAG 720 consensus_8180#1 ------------------------------------------------------------ consensus_8180#0 CAAACAGAGCCTCAACTGCAACCCCCACCACCGCCTCAGCAGCCAAAAGAGGAATGCATT 780 consensus_8180#1 ------------------------------------------------------------ consensus_8180#0 TCCTCGCCATTGATCGAGGAAAATGTACCTGTTATTGATGAGCCACCACCTCCCAAGAAG 840 consensus_8180#1 ------------------------------------------------------------ consensus_8180#0 CGGCAGCAGGGCCGCCAACCCAAGGTACCAAGGGCTAAGAAGCCCAAGAAGTCTGCTGCT 900 consensus_8180#1 ------------------------------------------------------------ consensus_8180#0 CCTCGTGAGGATGGCGCACCACCCAATGCACCAGCACCACGGAGAAGGGGTCCCAGGAAG 960 consensus_8180#1 ---------CATAA-GCCTGGTTAGGTGAGCCAGAGGGCGAGCCAAGGGGTCCCATGAAG 50 ** ** ** **** * *********** **** consensus_8180#0 AATATAGGGATGGTAATTAATGGTATTGATTTGGACCTCTCAAGGATACCAACGCCCATT 1020 consensus_8180#1 AATATAGGGATGGTGATTAATGGTATTGATTTGGCCCTCTCAAGGATACCAACACCCATT 110 ************** ******************* ****************** ****** consensus_8180#0 TGTTCTTGCACGGGCGCACCACAGCAGTGCTATCGGTGGGGTGCAGGTGGTTGGCAATCT 1080 consensus_8180#1 TGTACCTACACAGGCGCACCGCAGCAGTGCTATCGGTGGGGTGCTGGTGGTTGGCAATNT 170 *** * * *** ******** *********************** ************* * consensus_8180#0 GCGTGCTGCACAACCACCAT-CTCAACGTACCCACTGCCAATGAGTACGAAGCGCCGTGG 1139 consensus_8180#1 GCGTGNTGCNCAACCACCGTTCTCAACATACCCACTGCCAATGAATACAAAGCGTCATGG 230 ***** *** ******** * ****** **************** *** ***** * *** consensus_8180#0 TGCACGAATCGCAGGCAGGAAGATGAGCCATGGTGCGTTCAAGAAAGTACTTGAGAAGCT 1199 consensus_8180#1 TGCACGAATCGCAGGCAGGAAGATGAGCCATGGAGCGTTCAAGAAAGTCCTTGAGAAGCT 290 ********************************* ************** *********** consensus_8180#0 TGCTGGTGAAGGTTATAATCTTAATAATCCGATTGACCTGAAGACCTTCTGGGCGAAGCA 1259 consensus_8180#1 TGCTGGCAAAGGCTACAATCTTAATAATCCGATTGACCTAAAGACCTTCTGGGCGAAGCA 350 ****** **** ** *********************** ******************** consensus_8180#0 TGGAACAAACAAGTTTGTTACCATAA-----GGTAAAAGAC--AATGAAATTCTAAAATT 1312 consensus_8180#1 TGGAACAAACAAGTTTGTTACCATAATATAAGGTAAGAGACTAAAAGAAATTCTAAA-TT 409 ************************** ***** **** ** *********** ** consensus_8180#0 TGTTGGCTTTGTAGGTTGCTCTGCAGCTGTTTGGTCTGAGTAATTGTCTGTATGTACTCT 1372 consensus_8180#1 TGTTGGCTTTGTAGGTTCCTCTGCTGCTGTTTGGTCTGAGTAATTGTCTGTATGTACTCT 469 ***************** ****** *********************************** consensus_8180#0 AGATTACAAACTGCAGAATCCTTTTAGGTGTAGGTTTTAGGCATGTCCTGTCCCTTT-GC 1431 consensus_8180#1 AGATGACAAACTGCAGAATCCTTTTAGGTGTAGGTTTTATCCATGTCCTGTCCCTTTTGC 529 **** ********************************** **************** ** consensus_8180#0 AGTAGTTTACATGCCTCATCTGTGACCTGGGTGCTGACCTGTATGGTGGCTATCTGCATG 1491 consensus_8180#1 AGTAGTTTACATGCCTCATCTGTGACCTAGGAACTTACCTGTATGGTGGCTATCTGCATG 589 **************************** ** ** ************************ consensus_8180#0 TATCTTTGTCATTATCTTTACAAGTAGCAGTGTAATGCGACAATCTCTAATTTAGGTGGC 1551 consensus_8180#1 TATCTTTATCATTGTCTTCCCAAGTAGCAATGTAATGCGACAGTCTCTAATTTAAGTTGC 649 ******* ***** **** ********* ************ *********** ** ** consensus_8180#0 ATGAAAGTTAATCTGTTCAACGTTTCTCATTAAAAAAAAA- 1591 consensus_8180#1 A---AAGTTAATCATTTGAATGTTAAAAAAAAAAAAAAAAA 687 * ********* ** ** *** * ********* |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||