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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8190#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 1917 fasta sequence
[CCCGTCCCGTTTCCTTGCTGCCCGGCCGCCTGCCCCTCAACCTCATCGCGCAATCTCCATCACCGTCCGGCGTCCGCGAGCAGCGGTGCAGAGGGCGTCCTTACTCGTTCCGCGCGCCCCGCCCAGGTCAATCTCCCCGTACCCTCAGCCTCGACTCTCTGAGTCTCCACGCGATCGACTTCGCCCGCAGCCTGCGCCGACCCTCTCGATCTCCATCCATCCCACGAGGGGAGCACCGGTGGGTGCCGTCGTCCTCCGGTGAGCACCACGACGCACATCCTTTTTCTTTATGGTTCATCCCTATCGTTCTACCCTATCTTCTCTTCTAGATCTGAAAGCTTTTCTCTTTGTCTTAACCTTAGTACTAACAACAACAGTTCTTCCCCCAAAAAGAATTTAGGGGGTTCATGTCCCTGTTGGTACACGATGAACCCTGCAAGCCGAAGACATTATGATTCTCTCGTCGCGCGATATGGTGACCAAGATGCACTCGCCGACCGTTTCGGCGGCCAAAACGACGGCCCTGACGCCTGGTGGTCCAACCTGCGTGTGCGGATGTCTCAGGATCATCTACTGAGGCACGAGGCGCGGAGGCGAGCCGCCACCTTGGAGGTTTTCGAGGATAGAGAAAACTCGCATGATGGTGCCTTTGGTTGCGGTGACCGGGCCTCTGCTAAGGCCATGGTAACTCTGCATCAGCCCAATTTGGGCGAGACCAGGGAGCAGGATTGCGCCGTGTGCCTTGAGCCTTTCGAGGAAGGCAATACGCTTAGAATGATGCCATGTTTCCATTCCTTCCATCAGCGCTGCATCTTCAGTTGGCTCCGCATTAGCCGCATCTGCCCGGTGTGCCGTTTCACGCTGCCCTCCCAGGCTGATTTTGAGTCGGAGAAGGCTGAGAAAGAACGAGTTAGTGCTTCACCTGAAGATGGCAATAACTGATTGATGAAGATCAATCTGCTTAGTGAGTTACTTTGCTTGTGTCCTGTCTCACAATTGAGTTGATCTTATTTATGCTTCATGGTTGATATATTTATCATCTAAAGATGGCAGCAATTGTCC-TGCTCCACTT-AAATATTCTTGGTAGATATATTTATTAGAGTAAATTTCAGAACA-TTCTGTGTTTTGTGGTCTTAATTGCATAATGCTCCGGATATTATGGCATGTAGCATATAACCCTA-GTCATTATGGTATCAAGGTTTCGCAAAACCCAGCATTCACTCAAATCATAAAAAAAACAACTTGTTGACACATATTCACTTCATTTTTCATGCCATA-AACCACTATGTATTGTTCAAATGTTGGTTACTTGATCAGGATGACCAGTTTAATCAGTCAACGTTTTGAACATTATTAT-GTCAAGGATGGTAAAATTAGCTGAAATTTGAACTAGGATGGATTTTATGATACTTCTA-GGTTATAGAGCATAGGGTTATGTGCCTCGAGTCAT-AATATCCGGAGGTTTATGCAACTTTGACCGCAAAATGTGG-TTTTTTGTGAAATTTACTCTGATTAGAGTAGATTTCAGAACACCATGTAAGTTTATTTATGGGATTGTCAATCATAAAC-TTTGTTGTTTGATCCAATATACTTCAAGGAAGAATATTTATCTCCCGTCTAATGAAAAATTAGAAGCAAAGATGCTGTCTTTTGCATCATTGATGTAATCTTTTCATTGGTAACCTTTGTAGATTACTTTAATTGTAATTGGTAGCTCATCATTGTTGCCGGGATCAGGTACCCCCAGGCAAATGGGTGGTTATGTTGTAATCCTCAGCGCCTTGCTGCTGAGCTCGTACCAGTTTCTCCTCCTAATAAACATGGCCGGCCCAGTGAAAAGTATTGTTCATTGGTAGTTGTCTTTCTCATTGACACCCAATGCAAGGCCTTGTGCCTGACATATGTAAGAAGAAAAAA]
[+] EMBL AK101391 [CCCGTCCCGTTTCCTTGCTGCCCGGCCGCCTGCCCCTCAACCTCATCGCGCAATCTCCATCACCGTCCGGCGTCCGCGAGCAGCGGTGCAGAGGGCGTCCTTACTCGTTCCGCGCGCCCCGCCCAGGTCAATCTCCCCGTACCCTCAGCCTCGACTCTCTGAGTCTCCACGCGATCGACTTCGCCCGCAGCCTGCGCCGACCCTCTCGATCTCCATCCATCCCACGAGGGGAGCACCGGTGGGTGCCGTCGTCCTCCGGTGAGCACCACGACGCACATCCTTTTTCTTTATGGTTCATCCCTATCGTTCTACCCTATCTTCTCTTCTAGATCTGAAAGCTTTTCTCTTTGTCTTAACCTTAGTACTAACAACAACAGTTCTTCCCCCAAAAAGAATTTAGGGGGTTCATGTCCCTGTTGGTACACGATGAACCCTGCAAGCCGAAGACATTATGATTCTCTCGTCGCGCGATATGGTGACCAAGATGCACTCGCCGACCGTTTCGGCGGCCAAAACGACGGCCCTGACGCCTGGTGGTCCAACCTGCGTGTGCGGATGTCTCAGGATCATCTACTGAGGCACGAGGCGCGGAGGCGAGCCGCCACCTTGGAGGTTTTCGAGGATAGAGAAAACTCGCATGATGGTGCCTTTGGTTGCGGTGACCGGGCCTCTGCTAAGGCCATGGTAACTCTGCATCAGCCCAATTTGGGCGAGACCAGGGAGCAGGATTGCGCCGTGTGCCTTGAGCCTTTCGAGGAAGGCAATACGCTTAGAATGATGCCATGTTTCCATTCCTTCCATCAGCGCTGCATCTTCAGTTGGCTCCGCATTAGCCGCATCTGCCCGGTGTGCCGTTTCACGCTGCCCTCCCAGGCTGATTTTGAGTCGGAGAAGGCTGAGAAAGAACGAGTTAGTGCTTCACCTGAAGATGGCAATAACTGATTGATGAAGATCAATCTGCTTAGTGAGTTACTTTGCTTGTGTCCTGTCTCACAATTGAGTTGATCTTATTTATGCTTCATGGTTGATATATTTATCATCTAAAGATGGCAGCAATTGTCC TGCTCCACTT AAATATTCTTGGTAGATATATTTATTAGAGTAAATTTCAGAACA TTCTGTGTTTTGTGGTCTTAATTGCATAATGCTCCGGATATTATGGCATGTAGCATATAACCCTA GTCATTATGGTATCAAGGTTTCGCAAAACCCAGCATTCACTCAAATCATAAAAAAAACAACTTGTTGACACATATTCACTTCATTTTTCATGCCATA AACCACTATGTATTGTTCAAATGTTGGTTACTTGATCAGGATGACCAGTTTAATCAGTCAACGTTTTGAACATTATTAT GTCAAGGATGGTAAAATTAGCTGAAATTTGAACTAGGATGGATTTTATGATACTTCTA GGTTATAGAGCATAGGGTTATGTGCCTCGAGTCAT AATATCCGGAGGTTTATGCAACTTTGACCGCAAAATGTGG TTTTTTGTGAAATTTACTCTGATTAGAGTAGATTTCAGAACACCATGTAAGTTTATTTATGGGATTGTCAATCATAAAC TTTGTTGTTTGATCCAATATACTTCAAGGAAGAATATTTATCTCCCGTCTAATGAAA ]
[+] EMBL BM419202 [ cCAGCAATTGTCCGGGCTCCACTTGAAATATTCTTGGTAGATATATTTATTAGAGTAAATTTCAGAACACTTCTGTGTTTTGTGGTCTTAATTGCATAATGCTCCGGATATTATGGCATGTAGCATATAACCCTATGTCATTATGGTATCAAGGTTTCGC AAACCTAGCATTCACTCAAATCATAAAAAAAACAACTTGTTGACACATATTCACTTCATTTTTCATGCCATANAACCACTATGTATTGTTCAAATGTTGGTTACTTGATCAGGATGACCAGTTTAATCAGTCAACGTTTTGAACATTATTAT GTCAAGGATGGTAAAATTAGCTGAAATTTGAACTAGGATGGATTTTATGATACTTCTA GGTTATAGAGCATAGGGTTATGTGCCTCGAGTCAT AATATCCGGAGGTTTATGCAACTTTGACCGCAAAATGTGG TTTTTTGTGAAATTTACTCTGATTAGAGTAGATTTCAGAACACCATGTAAGTTTATTTATGGGATTGTCAATCATAAACNTTCNTTGTTTGATCCAAaaaaaaaa ]
[+] EMBL BI806804 [ TGACACATATTCACTTCATTTTTCATGCCATA AACCACTATGTATTGTTCAAATGTTGGTTACTTGATCAGGATGACCAGTTTAATCAGTCAACGTTTTGAACATTATTAT GTCAAGGATGGTAAAATTAGCTGAAATTTGAACTAGGATGGATTTTATGATACTTCTA GGTTATAGAGCATAGGGTTATGTGCCTCGAGTCAT AATATCCGGAGGTTTATGCAACTTTGACCGC AAATGTGG TTTTTTGTGAAATTTACTCTGATTAGAGTAGATTTCAGAACACCATGTAAGTTTATTTATGGGATTGTCAATCATAAAC TTTGTTGTTTGATCCAAaa ]
[+] EMBL BQ908463 [ GTCAACGTTTTGAACATTATAATGGTCAAGGATGGT AAATTAGCTGAAATTTGAACTAGGATGGATTTTATGATACTTCTACGGTTATAGAGCATAGGGTTATGTGCCTCGAGTCATGAATATCCGGAGGTTTATGCAACTTTGACCGC AAATGTGGTTTTTTTGTGAAATTTACTCTGATTAGAGTAGATTTCAGAACACCATGTAAGTTTATTTATGGGATTGTCAATCATAAAC TTTGTTGTTTGATCCAATATACTTCAAGGAAGAATATTTATCTCCCGTCTAATGAAAAATTAGAAGCAAAGATGCTGTCTTTTGCATCATTGATGTAATCTTTTCATTGGTAACCTTTGTAGATTACTTTAATTGTAATTGGTAGCTCATCATTGTTGCCGGGATCAGGTACCCCCAGGCAAATGGGTGGTTATGTTGTAATCCTCAGCGCCTTGCTGCTGAGCTCGTACCAGTTTCTCCTCCTAATAAACATGGCCGGCCCAGTGAAAAGTATTGTTCATTGGTAGTTGTCTTTCTCATTGACACCCAATGCAAGGCCTTGTGCCTGACATATGTAAGAAGAAAAAA]
consensusID : consensus_8190#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 947 fasta sequence
[CAGTCCCGTCCCGTTTCCTTGCTGCCCGGCCGCCTGCCCCTCAACCTCATCGCGCAATCTCCATCACCGTCCGGCGTCCGCGAGCAGCGGTGCAGAGGGCGTCCTTACTCGTTCCGCGCGCCCCGCCCAGGTCAATCTCCCCGTACCCTCAGCCTCGACTCTCTGAGTCTCCACGCGATCGACTTCGCCCGCAGCCTGCGCCGACCCTCTCGATCTCCATCCATCCCACGAGGGGAGCACCGGTGGGTGCCGTCGTCCTCCGTTCTTCCCCCAAAAAGAATTTAGGGGGTTCATGTCCCTGTTGGTACACGATGAACCCTGCAAGCCGAAGACATTATGATTCTCTCGTCGCGCGATATGGTGACCAAGATGCACTCGCCGACCGTTTCGGCGGCCAAAACGACGGCCCTGACGCCTGGTGGTCCAACCTGCGTGTGCGGATGTCTCAGGATCATCTACTGAGGCACGAGGCGCGGAGGCGAGCCGCCACCTTGGAGGTTTTCGAGGATAGAGAAAACTCGCATGATGGTGCCTTTGGTTGCGGTGACCGGGCCTCTGCTAAGGCCATGGTAACTCTGCATCAGCCCAATTTGGGCGAGACCAGGGAGCAGGATTGCGCCGTGTGCCTTGAGCCTTTCGAGGAAGGCAACACGCTTAGAATGATGCCATGTTTCCATTCCTTCCATCAGCGCTGCATCTTCAGTTGGCTCCGCATTAGCCGCATCTGCCCGGTGTGCCGTTTCACGCTGCCCTCCCAGGCTGATTTTGAGTCGGAGAAGGCTGAGAAAGAACGAGTTAGTGCTTCACCTGAAGATGGCAATAACTGATTGATGAAGATCAATCTGCTTAGTGAGTTACTTTGCTTGTGTCCTGTCTCACAATTGAGTTGATCTTATTTATGCTTCATGGTTGATATATTTATCATCTAAAGATGGCAGCAATTGTCC]
[+] EMBL AK111120 [CAGTCCCGTCCCGTTTCCTTGCTGCCCGGCCGCCTGCCCCTCAACCTCATCGCGCAATCTCCATCACCGTCCGGCGTCCGCGAGCAGCGGTGCAGAGGGCGTCCTTACTCGTTCCGCGCGCCCCGCCCAGGTCAATCTCCCCGTACCCTCAGCCTCGACTCTCTGAGTCTCCACGCGATCGACTTCGCCCGCAGCCTGCGCCGACCCTCTCGATCTCCATCCATCCCACGAGGGGAGCACCGGTGGGTGCCGTCGTCCTCCGTTCTTCCCCCAAAAAGAATTTAGGGGGTTCATGTCCCTGTTGGTACACGATGAACCCTGCAAGCCGAAGACATTATGATTCTCTCGTCGCGCGATATGGTGACCAAGATGCACTCGCCGACCGTTTCGGCGGCCAAAACGACGGCCCTGACGCCTGGTGGTCCAACCTGCGTGTGCGGATGTCTCAGGATCATCTACTGAGGCACGAGGCGCGGAGGCGAGCCGCCACCTTGGAGGTTTTCGAGGATAGAGAAAACTCGCATGATGGTGCCTTTGGTTGCGGTGACCGGGCCTCTGCTAAGGCCATGGTAACTCTGCATCAGCCCAATTTGGGCGAGACCAGGGAGCAGGATTGCGCCGTGTGCCTTGAGCCTTTCGAGGAAGGCAACACGCTTAGAATGATGCCATGTTTCCATTCCTTCCATCAGCGCTGCATCTTCAGTTGGCTCCGCATTAGCCGCATCTGCCCGGTGTGCCGTTTCACGCTGCCCTCCCAGGCTGATTTTGAGTCGGAGAAGGCTGAGAAAGAACGAGTTAGTGCTTCACCTGAAGATGGCAATAACTGATTGATGAAGATCAATCTGCTTAGTGAGTTACTTTGCTTGTGTCCTGTCTCACAATTGAGTTGATCTTATTTATGCTTCATGGTTGATATATTTATCATCTAAAGATGGCAGCAATTGTCC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_8190#0 ----CCCGTCCCGTTTCCTTGCTGCCCGGCCGCCTGCCCCTCAACCTCATCGCGCAATCT 56
consensus_8190#1 CAGTCCCGTCCCGTTTCCTTGCTGCCCGGCCGCCTGCCCCTCAACCTCATCGCGCAATCT 60
********************************************************
consensus_8190#0 CCATCACCGTCCGGCGTCCGCGAGCAGCGGTGCAGAGGGCGTCCTTACTCGTTCCGCGCG 116
consensus_8190#1 CCATCACCGTCCGGCGTCCGCGAGCAGCGGTGCAGAGGGCGTCCTTACTCGTTCCGCGCG 120
************************************************************
consensus_8190#0 CCCCGCCCAGGTCAATCTCCCCGTACCCTCAGCCTCGACTCTCTGAGTCTCCACGCGATC 176
consensus_8190#1 CCCCGCCCAGGTCAATCTCCCCGTACCCTCAGCCTCGACTCTCTGAGTCTCCACGCGATC 180
************************************************************
consensus_8190#0 GACTTCGCCCGCAGCCTGCGCCGACCCTCTCGATCTCCATCCATCCCACGAGGGGAGCAC 236
consensus_8190#1 GACTTCGCCCGCAGCCTGCGCCGACCCTCTCGATCTCCATCCATCCCACGAGGGGAGCAC 240
************************************************************
consensus_8190#0 CGGTGGGTGCCGTCGTCCTCCGGTGAGCACCACGACGCACATCCTTTTTCTTTATGGTTC 296
consensus_8190#1 CGGTGGGTGCCGTCGTCCTCCG-------------------------------------- 262
**********************
consensus_8190#0 ATCCCTATCGTTCTACCCTATCTTCTCTTCTAGATCTGAAAGCTTTTCTCTTTGTCTTAA 356
consensus_8190#1 ------------------------------------------------------------
consensus_8190#0 CCTTAGTACTAACAACAACAGTTCTTCCCCCAAAAAGAATTTAGGGGGTTCATGTCCCTG 416
consensus_8190#1 ---------------------TTCTTCCCCCAAAAAGAATTTAGGGGGTTCATGTCCCTG 301
***************************************
consensus_8190#0 TTGGTACACGATGAACCCTGCAAGCCGAAGACATTATGATTCTCTCGTCGCGCGATATGG 476
consensus_8190#1 TTGGTACACGATGAACCCTGCAAGCCGAAGACATTATGATTCTCTCGTCGCGCGATATGG 361
************************************************************
consensus_8190#0 TGACCAAGATGCACTCGCCGACCGTTTCGGCGGCCAAAACGACGGCCCTGACGCCTGGTG 536
consensus_8190#1 TGACCAAGATGCACTCGCCGACCGTTTCGGCGGCCAAAACGACGGCCCTGACGCCTGGTG 421
************************************************************
consensus_8190#0 GTCCAACCTGCGTGTGCGGATGTCTCAGGATCATCTACTGAGGCACGAGGCGCGGAGGCG 596
consensus_8190#1 GTCCAACCTGCGTGTGCGGATGTCTCAGGATCATCTACTGAGGCACGAGGCGCGGAGGCG 481
************************************************************
consensus_8190#0 AGCCGCCACCTTGGAGGTTTTCGAGGATAGAGAAAACTCGCATGATGGTGCCTTTGGTTG 656
consensus_8190#1 AGCCGCCACCTTGGAGGTTTTCGAGGATAGAGAAAACTCGCATGATGGTGCCTTTGGTTG 541
************************************************************
consensus_8190#0 CGGTGACCGGGCCTCTGCTAAGGCCATGGTAACTCTGCATCAGCCCAATTTGGGCGAGAC 716
consensus_8190#1 CGGTGACCGGGCCTCTGCTAAGGCCATGGTAACTCTGCATCAGCCCAATTTGGGCGAGAC 601
************************************************************
consensus_8190#0 CAGGGAGCAGGATTGCGCCGTGTGCCTTGAGCCTTTCGAGGAAGGCAATACGCTTAGAAT 776
consensus_8190#1 CAGGGAGCAGGATTGCGCCGTGTGCCTTGAGCCTTTCGAGGAAGGCAACACGCTTAGAAT 661
************************************************ ***********
consensus_8190#0 GATGCCATGTTTCCATTCCTTCCATCAGCGCTGCATCTTCAGTTGGCTCCGCATTAGCCG 836
consensus_8190#1 GATGCCATGTTTCCATTCCTTCCATCAGCGCTGCATCTTCAGTTGGCTCCGCATTAGCCG 721
************************************************************
consensus_8190#0 CATCTGCCCGGTGTGCCGTTTCACGCTGCCCTCCCAGGCTGATTTTGAGTCGGAGAAGGC 896
consensus_8190#1 CATCTGCCCGGTGTGCCGTTTCACGCTGCCCTCCCAGGCTGATTTTGAGTCGGAGAAGGC 781
************************************************************
consensus_8190#0 TGAGAAAGAACGAGTTAGTGCTTCACCTGAAGATGGCAATAACTGATTGATGAAGATCAA 956
consensus_8190#1 TGAGAAAGAACGAGTTAGTGCTTCACCTGAAGATGGCAATAACTGATTGATGAAGATCAA 841
************************************************************
consensus_8190#0 TCTGCTTAGTGAGTTACTTTGCTTGTGTCCTGTCTCACAATTGAGTTGATCTTATTTATG 1016
consensus_8190#1 TCTGCTTAGTGAGTTACTTTGCTTGTGTCCTGTCTCACAATTGAGTTGATCTTATTTATG 901
************************************************************
consensus_8190#0 CTTCATGGTTGATATATTTATCATCTAAAGATGGCAGCAATTGTCCTGCTCCACTTAAAT 1076
consensus_8190#1 CTTCATGGTTGATATATTTATCATCTAAAGATGGCAGCAATTGTCC-------------- 947
**********************************************
consensus_8190#0 ATTCTTGGTAGATATATTTATTAGAGTAAATTTCAGAACATTCTGTGTTTTGTGGTCTTA 1136
consensus_8190#1 ------------------------------------------------------------
consensus_8190#0 ATTGCATAATGCTCCGGATATTATGGCATGTAGCATATAACCCTAGTCATTATGGTATCA 1196
consensus_8190#1 ------------------------------------------------------------
consensus_8190#0 AGGTTTCGCAAAACCCAGCATTCACTCAAATCATAAAAAAAACAACTTGTTGACACATAT 1256
consensus_8190#1 ------------------------------------------------------------
consensus_8190#0 TCACTTCATTTTTCATGCCATAAACCACTATGTATTGTTCAAATGTTGGTTACTTGATCA 1316
consensus_8190#1 ------------------------------------------------------------
consensus_8190#0 GGATGACCAGTTTAATCAGTCAACGTTTTGAACATTATTATGTCAAGGATGGTAAAATTA 1376
consensus_8190#1 ------------------------------------------------------------
consensus_8190#0 GCTGAAATTTGAACTAGGATGGATTTTATGATACTTCTAGGTTATAGAGCATAGGGTTAT 1436
consensus_8190#1 ------------------------------------------------------------
consensus_8190#0 GTGCCTCGAGTCATAATATCCGGAGGTTTATGCAACTTTGACCGCAAAATGTGGTTTTTT 1496
consensus_8190#1 ------------------------------------------------------------
consensus_8190#0 GTGAAATTTACTCTGATTAGAGTAGATTTCAGAACACCATGTAAGTTTATTTATGGGATT 1556
consensus_8190#1 ------------------------------------------------------------
consensus_8190#0 GTCAATCATAAACTTTGTTGTTTGATCCAATATACTTCAAGGAAGAATATTTATCTCCCG 1616
consensus_8190#1 ------------------------------------------------------------
consensus_8190#0 TCTAATGAAAAATTAGAAGCAAAGATGCTGTCTTTTGCATCATTGATGTAATCTTTTCAT 1676
consensus_8190#1 ------------------------------------------------------------
consensus_8190#0 TGGTAACCTTTGTAGATTACTTTAATTGTAATTGGTAGCTCATCATTGTTGCCGGGATCA 1736
consensus_8190#1 ------------------------------------------------------------
consensus_8190#0 GGTACCCCCAGGCAAATGGGTGGTTATGTTGTAATCCTCAGCGCCTTGCTGCTGAGCTCG 1796
consensus_8190#1 ------------------------------------------------------------
consensus_8190#0 TACCAGTTTCTCCTCCTAATAAACATGGCCGGCCCAGTGAAAAGTATTGTTCATTGGTAG 1856
consensus_8190#1 ------------------------------------------------------------
consensus_8190#0 TTGTCTTTCTCATTGACACCCAATGCAAGGCCTTGTGCCTGACATATGTAAGAAGAAAAA 1916
consensus_8190#1 ------------------------------------------------------------
consensus_8190#0 A 1917
consensus_8190#1 -
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||