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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8196#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 1502 fasta sequence
[CCCAATCTTTTTGGCGGGAGAGCACCACAGCGCCGCCTCCACTTCCCGCGCAATTCGCAAGAGAAGAGCCATGGACGGCGGGTCCTCCACGGCGGCGAGGTCGTCGGCGGCGGAGATGGAGGAGCACCAGAACTGGAAGAAGAACGCGCCGGTGCTCTACGACCTCGTCATCTCCCAGCCGCTCGAGTGGCCGTCGCTCACCGTCCAGTGGCTCCCCTCCCACTCCCGGTCGCCGGGCTCCGCCCGC-TCCCACCGCCTCGTCCTCGGCACCCACACCTCCGACGAGACGCCCAACCACCTCCTACTCGCCGACGCCGCCCTCCCGCTCCCGCCCCGCCTGGCGGCGGCGGCCGCGGCGGCGGGCGGTGCCGTCCCGGCCCCGTCCGTGTCCATCTCCCGCTCGGTGCCGCACAAGGGCGAGGTCAACCGCGCCCGCTGCATGCCGCAGAGGCCGTACACGGTGGCTACCAAGACCTGCGTGGATGAGGTGCACGTGTACCATCTTGGCGACGGCGGCGAGAAGGGCGGCGCCGATGTGGTGCTCAGGGGGCATGAAGCGGAGGGGTATGGGCTGGCGTGGAGTCCGATGAAGGAGGGGTTGCTGCTGAGCGGCTCGTATGATAAGAAGATTTGCCTTTGGGATCTCGCTGCTGGGAGTGGAGCTTCGTCTCTGGATGCACATCATGTGTTCGAGGCTCATGACGATGTTGTTGAAGATGTTGCATGGCACCTGAAAGATGAAAACCTATTTGGATCTGCTGGGGATGACTGCAAGCTGATGATGTGGGACTTGCGTACTAATAAACCAGGACAATCTATAGTAGCACACCAAAAAGAAGTAAACTCTTTGTCCTTCAATCCGTTTAATGAGTGGATCTTGGCTTCAGCATCTGGAGATGCAACTATTAAGCTATTTGACTTGCGAAAACTGTCAAGAAGCCTGCATGTATTCGACAGCCATGACTCCTGTAGGGGAGAGGTTTTTCAGGTTGAGTGGAATCCTAATTTGGAGACTGTGTTAGCATCCTCAGCTGCAGACAAAAGGGTGATGATATGGGATGTTAGCAGGATCGGAGACGAGCAGGCAGAGGAGGATGCAAACGATGGTCCACCGGAGCTGCTGTTCGTGCATGGAGGCCACACAGCCAAGATATCAGAGTTGTCGTGGAACCCCACCCAGAAATGGGTCATGGCCAGCGTGGCCGAGGATAACATCCTGCAGATCTGGGAGATGGCAGAAAGCATATACTGTGATGACAATTATCTCCATGACAATGATGATGACTCGTGCCCAGCCACATAAGGACCTGGCCAACTTCCCTATTCTGTTTCTGTTGCGTCTTTGGATAGCTTGGTTGGATTGATCATATATTCAGTTAGTAACCTCTAGTAGGCTTTGAGATGCTGTTGTTTAATCAGCTTTCGTTTTCGTTTGACACCTCCAATCCAAGGATGGAACATCTTGATGTAGAATGTCCAACTATTTACTACTGTATGCCTTG]
[+] EMBL AK103397 [CCCAATCTTTTTGGCGGGAGAGCACCACAGCGCCGCCTCCACTTCCCGCGCAATTCGCAAGAGAAGAGCCATGGACGGCGGGTCCTCCACGGCGGCGAGGTCGTCGGCGGCGGAGATGGAGGAGCACCAGAACTGGAAGAAGAACGCGCCGGTGCTCTACGACCTCGTCATCTCCCAGCCGCTCGAGTGGCCGTCGCTCACCGTCCAGTGGCTCCCCTCCCACTCCCGGTCGCCGGGCTCCGCCCGC TCCCACCGCCTCGTCCTCGGCACCCACACCTCCGACGAGACGCCCAACCACCTCCTACTCGCCGACGCCGCCCTCCCGCTCCCGCCCCGCCTGGCGGCGGCGGCCGCGGCGGCGGGCGGTGCCGTCCCGGCCCCGTCCGTGTCCATCTCCCGCTCGGTGCCGCACAAGGGCGAGGTCAACCGCGCCCGCTGCATGCCGCAGAGGCCGTACACGGTGGCTACCAAGACCTGCGTGGATGAGGTGCACGTGTACCATCTTGGCGACGGCGGCGAGAAGGGCGGCGCCGATGTGGTGCTCAGGGGGCATGAAGCGGAGGGGTATGGGCTGGCGTGGAGTCCGATGAAGGAGGGGTTGCTGCTGAGCGGCTCGTATGATAAGAAGATTTGCCTTTGGGATCTCGCTGCTGGGAGTGGAGCTTCGTCTCTGGATGCACATCATGTGTTCGAGGCTCATGACGATGTTGTTGAAGATGTTGCATGGCACCTGAAAGATGAAAACCTATTTGGATCTGCTGGGGATGACTGCAAGCTGATGATGTGGGACTTGCGTACTAATAAACCAGGACAATCTATAGTAGCACACCAAAAAGAAGTAAACTCTTTGTCCTTCAATCCGTTTAATGAGTGGATCTTGGCTTCAGCATCTGGAGATGCAACTATTAAGCTATTTGACTTGCGAAAACTGTCAAGAAGCCTGCATGTATTCGACAGCCATGACTCCTGTAGGGGAGAGGTTTTTCAGGTTGAGTGGAATCCTAATTTGGAGACTGTGTTAGCATCCTCAGCTGCAGACAAAAGGGTGATGATATGGGATGTTAGCAGGATCGGAGACGAGCAGGCAGAGGAGGATGCAAACGATGGTCCACCGGAGCTGCTGTTCGTGCATGGAGGCCACACAGCCAAGATATCAGAGTTGTCGTGGAACCCCACCCAGAAATGGGTCATGGCCAGCGTGGCCGAGGATAACATCCTGCAGATCTGGGAGATGGCAGAAAGCATATACTGTGATGACAATTATCTCCATGACAATGATGATGACTCGTGCCCAGCCACATAAGGACCTGGCCAACTTCCCTATTCTGTTTCTGTTGCGTCTTTGGATAGCTTGGTTGGATTGATCATATATTCAGTTAGTAACCTCTAGTAGGCTTTGAGATGCTGTTGTTTAATCAGCTTTCGTTTTCGTTTGACACCTCCAATCCAAGGATGGAACATCTTGATGTAGAATGTCCAACTATTTACTACTGTATGCCTTG]
[+] EMBL AK101798 [ CAATCTTTTTGGCGGGAGAGCACCACAGCGCCGCCTCCACTTCCCGCGCAATTCGCAAGAGAAGAGCCATGGACGGCGGGTCCTCCACGGCGGCGAGGTCGTCGGCGGCGGAGATGGAGGAGCACCAGAACTGGAAGAAGAACGCGCCGGTGCTCTACGACCTCGTCATCTCCCAGCCGCTCGAGTGGCCGTCGCTCACCGTCCAGTGGCTCCCCTCCCACTCCCGGTCGCCGGGCTCCGCCCGC TCCCACCGCCTCGTCCTCGGCACCCACACCTCCGACGAGACGCCCAACCACCTCCTACTCGCCGACGCCGCCCTCCCGCTCCCGCCCCGCCTGGCGGCGGCGGCCGCGGCGGCGGGCGGTGCCGTCCCGGCCCCGTCCGTGTCCATCTCCCGCTCGGTGCCGCACAAGGGCGAGGTCAACCGCGCCCGCTGCATGCCGCAGAGGCCGTACACGGTGGCTACCAAGACCTGCGTGGATGAGGTGCACGTGTACCATCTTGGCGACGGCGGCGAGAAGGGCGGCGCCGATGTGGTGCTCAGGGGGCATGAAGCGGAGGGGTATGGGCTGGCGTGGAGTCCGATGAAGGAGGGGTTGCTGCTGAGCGGCTCGTATGATAAGAAGATTTGCCTTTGGGATCTCGCTGCTGGGAGTGGAGCTTCGTCTCTGGATGCACATCATGTGTTCGAGGCTCATGACGATGTTGTTGAAGATGTTGCATGGCACCTGAAAGATGAAAACCTATTTGGATCTGCTGGGGATGACTGCAAGCTGATGATGTGGGACTTGCGTACTAATAAACCAGGACAATCTATAGTAGCACACCAAAAAGAAGTAAACTCTTTGTCCTTCAATCCGTTTAATGAGTGGATCTTGGCTTCAGCATCTGGAGATGCAACTATTAAGCTATTTGACTTGCGAAAACTGTCAAGAAGCCTGCATGTATTCGACAGCCATGACTCCTGTAGGGGAGAGGTTTTTCAGGTTGAGTGGAATCCTAATTTGGAGACTGTGTTAGCATCCTCAGCTGCAGACAAAAGGGTGATGATATGGGATGTTAGCAGGATCGGAGACGAGCAGGCAGAGGAGGATGCAAACGATGGTCCACCGGAGCTGCTGTTCGTGCATGGAGGCCACACAGCCAAGATATCAGAGTTGTCGTGGAACCCCACCCAGAAATGGGTCATGGCCAGCGTGGCCGAGGATAACATCCTGCAGATCTGGGAGATGGCAGAAAGCATATACTGTGATGACAATTATCTCCATGACAATGATGATGACTCGTGCCCAGCCACATAAGGACCTGGCCAACTTCCCTATTCTGTTTCTGTTGCGTCTTTGGATAGCTTGGTTGGATTGATCATATATTCAGTTAGTAACCTCTAGTAGGCTTTGAGATGCTGTTGTTTAATCAGCTTTCGTTTTCGTTTGACACCTCCAATCCAAGGATGGAACATCTTGATGTAGAATGTCCAACT ]
[+] EMBL AU069678 [ ACCACAGCGCCGCCTCCACTTCCCGCGCAATTCGCAAGAGAAGAGCCATGGACGGCGGGTCCTCCACGGCGGCGAGGTCGTCGGCGGCGGAGATGGAGGAGCACCAGAACTGGAAGAAGAACGCGCCGGTGCTCTACGACCTCGTCATCTCCCAGCCGCTCGAGTGGCCGTCGCTCACCGTCCAGTGGCTCCCCTCCCACTCCCGGTCGCCGGGCTCCGNCCGC TCCCACCGCCTCGTCCTCGGCACCCACACCTCCGACGAGACGCCCAACCACCTCCTACTCGCCGACGCCGCCCTCCCGCTCCCGCCCCG ]
[+] EMBL OSC12432 [ CCACAGCGCCGCCTCCACTTCCCGCGCAATTCGCAAGANAAGAGCCATGGACGGCGGGTCCTCCACGGCGGCGAGGTCGTCGGCGGCGGAGATGGAGGAGCACCAGAACTGGAAGAAGAACGCNCCGGTGCTCTACGACCTCGTCATCTCCCAGCCGCTCGANTGGCCGTCGCTCACCGTCCAGTGGNTCCCCTCCCACTCCCGGTCGNCGGGCTCCG NCGCTTNCCACCGTCTCGTCCTCGGGACCCACACCTNNAACGAGAC ]
consensusID : consensus_8196#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 259 fasta sequence
[ACCACAGCGCCGCCTCCACTTNCCGCGCAATTCGCAAGANAAGAGCCATGGACGGCGGGTCCTCCACGGCGGCGAGGTCGTCGGCGGCGGAGATGGAGGAGCACCAGAACTGGAAGANGAACGCGCCGGTNCTCTACGACCTCGTCATCTCCCAGCCGTTCGAGTNGCCGTCGCTCACCGTCCAGTGGCTCCNNTGCCACTCCGGGTCGCNGNCTCCGNCGNNTCCCANNGANTNGTNCTTGCACCGACAGCTCCGACG]
[+] EMBL OS1258A [ACCACAGCGCCGCCTCCACTTNCCGCGCAATTCGCAAGANAAGAGCCATGGACGGCGGGTCCTCCACGGCGGCGAGGTCGTCGGCGGCGGAGATGGAGGAGCACCAGAACTGGAAGANGAACGCGCCGGTNCTCTACGACCTCGTCATCTCCCAGCCGTTCGAGTNGCCGTCGCTCACCGTCCAGTGGCTCCNNTGCCACTCCGGGTCGCNGNCTCCGNCGNNTCCCANNGANTNGTNCTTGCACCGACAGCTCCGACG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_8196#0 CCCAATCTTTTTGGCGGGAGAGCACCACAGCGCCGCCTCCACTTCCCGCGCAATTCGCAA 60
consensus_8196#1 -----------------------ACCACAGCGCCGCCTCCACTTNCCGCGCAATTCGCAA 37
********************* ***************
consensus_8196#0 GAGAAGAGCCATGGACGGCGGGTCCTCCACGGCGGCGAGGTCGTCGGCGGCGGAGATGGA 120
consensus_8196#1 GANAAGAGCCATGGACGGCGGGTCCTCCACGGCGGCGAGGTCGTCGGCGGCGGAGATGGA 97
** *********************************************************
consensus_8196#0 GGAGCACCAGAACTGGAAGAAGAACGCGCCGGTGCTCTACGACCTCGTCATCTCCCAGCC 180
consensus_8196#1 GGAGCACCAGAACTGGAAGANGAACGCGCCGGTNCTCTACGACCTCGTCATCTCCCAGCC 157
******************** ************ **************************
consensus_8196#0 GCTCGAGTGGCCGTCGCTCACCGTCCAGTGGCTCCCCTCCCACTCCCGGTCGCCGGGCTC 240
consensus_8196#1 GTTCGAGTNGCCGTCGCTCACCGTCCAGTGGCTCCNNTGCCACTCCGGGTCGCNGN-CTC 216
* ****** ************************** * ******* ****** * ***
consensus_8196#0 CGCCCGCTCCCACCGCCTCGTCCTCGGCACCCACACCTCCGACGAGACGCCCAACCACCT 300
consensus_8196#1 CGNCGNNTCCCANNGANTNGTNCTTG-CACCGACAGCTCCGACG---------------- 259
** * ***** * * ** ** * **** *** ********
consensus_8196#0 CCTACTCGCCGACGCCGCCCTCCCGCTCCCGCCCCGCCTGGCGGCGGCGGCCGCGGCGGC 360
consensus_8196#1 ------------------------------------------------------------
consensus_8196#0 GGGCGGTGCCGTCCCGGCCCCGTCCGTGTCCATCTCCCGCTCGGTGCCGCACAAGGGCGA 420
consensus_8196#1 ------------------------------------------------------------
consensus_8196#0 GGTCAACCGCGCCCGCTGCATGCCGCAGAGGCCGTACACGGTGGCTACCAAGACCTGCGT 480
consensus_8196#1 ------------------------------------------------------------
consensus_8196#0 GGATGAGGTGCACGTGTACCATCTTGGCGACGGCGGCGAGAAGGGCGGCGCCGATGTGGT 540
consensus_8196#1 ------------------------------------------------------------
consensus_8196#0 GCTCAGGGGGCATGAAGCGGAGGGGTATGGGCTGGCGTGGAGTCCGATGAAGGAGGGGTT 600
consensus_8196#1 ------------------------------------------------------------
consensus_8196#0 GCTGCTGAGCGGCTCGTATGATAAGAAGATTTGCCTTTGGGATCTCGCTGCTGGGAGTGG 660
consensus_8196#1 ------------------------------------------------------------
consensus_8196#0 AGCTTCGTCTCTGGATGCACATCATGTGTTCGAGGCTCATGACGATGTTGTTGAAGATGT 720
consensus_8196#1 ------------------------------------------------------------
consensus_8196#0 TGCATGGCACCTGAAAGATGAAAACCTATTTGGATCTGCTGGGGATGACTGCAAGCTGAT 780
consensus_8196#1 ------------------------------------------------------------
consensus_8196#0 GATGTGGGACTTGCGTACTAATAAACCAGGACAATCTATAGTAGCACACCAAAAAGAAGT 840
consensus_8196#1 ------------------------------------------------------------
consensus_8196#0 AAACTCTTTGTCCTTCAATCCGTTTAATGAGTGGATCTTGGCTTCAGCATCTGGAGATGC 900
consensus_8196#1 ------------------------------------------------------------
consensus_8196#0 AACTATTAAGCTATTTGACTTGCGAAAACTGTCAAGAAGCCTGCATGTATTCGACAGCCA 960
consensus_8196#1 ------------------------------------------------------------
consensus_8196#0 TGACTCCTGTAGGGGAGAGGTTTTTCAGGTTGAGTGGAATCCTAATTTGGAGACTGTGTT 1020
consensus_8196#1 ------------------------------------------------------------
consensus_8196#0 AGCATCCTCAGCTGCAGACAAAAGGGTGATGATATGGGATGTTAGCAGGATCGGAGACGA 1080
consensus_8196#1 ------------------------------------------------------------
consensus_8196#0 GCAGGCAGAGGAGGATGCAAACGATGGTCCACCGGAGCTGCTGTTCGTGCATGGAGGCCA 1140
consensus_8196#1 ------------------------------------------------------------
consensus_8196#0 CACAGCCAAGATATCAGAGTTGTCGTGGAACCCCACCCAGAAATGGGTCATGGCCAGCGT 1200
consensus_8196#1 ------------------------------------------------------------
consensus_8196#0 GGCCGAGGATAACATCCTGCAGATCTGGGAGATGGCAGAAAGCATATACTGTGATGACAA 1260
consensus_8196#1 ------------------------------------------------------------
consensus_8196#0 TTATCTCCATGACAATGATGATGACTCGTGCCCAGCCACATAAGGACCTGGCCAACTTCC 1320
consensus_8196#1 ------------------------------------------------------------
consensus_8196#0 CTATTCTGTTTCTGTTGCGTCTTTGGATAGCTTGGTTGGATTGATCATATATTCAGTTAG 1380
consensus_8196#1 ------------------------------------------------------------
consensus_8196#0 TAACCTCTAGTAGGCTTTGAGATGCTGTTGTTTAATCAGCTTTCGTTTTCGTTTGACACC 1440
consensus_8196#1 ------------------------------------------------------------
consensus_8196#0 TCCAATCCAAGGATGGAACATCTTGATGTAGAATGTCCAACTATTTACTACTGTATGCCT 1500
consensus_8196#1 ------------------------------------------------------------
consensus_8196#0 TG 1502
consensus_8196#1 --
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||