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Oryza sativa
cluster # 8197 cluster # 8197       Sequences # 5       consensus # 1


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_8197#0 length = 913 sequences # 5  

consensusID : consensus_8197#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 5
consensus length = 913
fasta sequence
                              [AAATTATTTTTCTCTTAACGGCCCCCAAACCCTGAAACGTTTCAACCGAAGTTAGGGTCCANCGGCCGAAAGAGCACCGCACGTCGCNCGTTGTCCGGTCNCCCCCGGCGGCCCTTTAAAATCCGGAGGACCGAGTACCGTCCACGCCCGGTCGTACTTATAACCGCATCAGGTCTCCAAGGTGAACA-CCTCTGGCCAATGGAACAATGTAGGCAAGGNAAGTCGGCAAAACGGATCCGTAACTTCGGGAAAAGGATTGGCTNTGAGGGCTGGGCTCGGGGGTCCCGGCCCCGAACCCGTCGGCTGCCGGCGGACTGCTCGAGCTGCTCGCGCGGCGAGAGCGGGCCGCCGCGTGCCGGCCGGGGGACGGACCGGGANAC-GCCCCCTCGGGGGCCTTCCCCGGGCGTCGAACAGCCGACTCAGAACTGGTACGGACAAGGGGAATCCGACTGTTTAATTAAAACAAAGCATTGCGATGGTCCTCGCGGATGCTGAACACATCAAAGCAATCTTTGGGGCAACATTCTGGCTCCAATTCAGGACGGTCGACACCAGTTGCTCCTGCTGATGGAATATCTGCTAGCAGTTCAGTAGTAGAGAGTGAAGTGAGTAACATGACTACAATTCAGGAGCTGAAAAATGAAGAAAATACCGAGAAGCAAGAAGTGCAAGCAAGTTGATCGGTCATAAACTTATACTGCTGGTCTGTGTGAAAATTAGCACATCTATTTGGTGTATATTGCCGTATTCAACTGGTTTGAACCACAGATGTAGCACTGCTGTAAATTGGTAATAGTGCCTGATATGATCCACCTACAGAGGCCGAGTACAAAATTTTGAGTCACCATCTTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]

[-] EMBL AU108436             [AAATTATTTTTCTCTTAACGGCCCCCAAACCCTGAAACGTTTCAACCGAAGTTAGGGTCCANCGGCCGAAAGAGCACCGCACGTCGCNCGTTGTCCGGTCNCCCCCGGCGGCCCTTTAAAATCCGGAGGACCGAGTACCGTCCACGCCCGGTCGTACTTATAACCGCATCAGGTCTCCAAGGTGAACAGCCTCTGGCCAATGGAACAATGTAGGCAAGGNAAGTCGGCAAAACGGATCCGTAACTTCGGGAAAAGGATTGGCTNTGAGGGCTGGGCTCGGGGGTCCCGGCCCCGAACCCGTCGGCTGCCGGCGGACTGCTCGAGCTGCTCGCGCGGCGAGAGCGGGCCGCCGCGTGCCGGCCGGGGGACGGACCGGGANAC GCCCCCTCGGGGGCCTTCCCCGGGCGTCGAACAGCCGACTCAGAACTGGTACGG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               ]
[-] EMBL AU068721             [                                                                                                                                           GTCCACGCCCGGTCGTACTTATAACCGCATNAGGTCTCCAAGGTNAACA NCTCTGGCCAATGGAACAATGTAGGCAAGGNAAGTCGGNAAAACGGATCCGTAACTTCGGGAAAAGGATTGGCTNTGAGGGCTGGGCTCGGGGGTCCCGGCCCCGAACCCGTCGGCTGCCGGCGGACTGCTCGAGCTG TCGCGCGGCGAGAGCGGGCCGCCGCGTGCCGGCCGGGGGACGGACCGGGANAC GCCCCCTCGGGGGCCTTCCCCGGGCGTCGAACAGCCGACTCAGAACT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      ]
[-] EMBL AU163133             [                                                                                                                                                         gnACTCATAACCGCATCAGGTCTCCAAGGTGAACA CCTCTGGCCAATGGAACAATGTAGGCAAGGGAATTCGGCAAAACGGATCCGTAACTTCGGGAAAAGGATTGGCTCTGAGGNCTGGGCTCGGGGGTCCCGGCCNCGAACCCATCGGCTGCCGGCGGACTGCTCGAGCTG TCGCGCGGCGAGAGCGGGCCGCCGCGTGCCGGCCGGGGGACGGACCGGGNNAC GCCCCCTCGGGGGCCTTCCCCGGGCGTCGAACAGCCNACTCAGAACTGGTAC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 ]
[+] EMBL CF589217             [                                                                                                                                                                                                           AACAATGTAGGCAAGGGAAGTCGGCAAAACGGATCCGTAACTTCGGGAAAAGGATTGGCTCTGAGGGCTGGGCTCGGGGGTCCCGGCCCCGAACCCGTCGGCTGCCGGCGGACTGCTCGAGCTGCTCGCGCGGCGAGAGCGGGCCGCCGCGTGCCGGCCGGGGGACGGACCGGGA ACGGCCCCCTCGGGGGCCTTCCCCGGGCGTCGAACAGCCGACTCAGAACTGGTACGGACAAGGGGAATCCGACTGTTTAATTAAAACAAAGCATTGCGATGGTCCTCGCGGATGCTGAACACATCAAAGCAATCTTTGGGGCAACATTCTGGCTCCAATTCAGGACGGTCGACACCAGTTGCTCCTGCTGATGGAATATCTGCTAGCAGTTCAGTAGTAGAGAGTGAAGTGAGTAACATGACTACAATTCAGGAGCTGAAAAATGAAGAAAATACCGAGAAGCAAGAAGTGCAAGCAAGTTGATCGGTCATAAACTTATACTGCTGGTCTGTGTGAAAATTAGCACATCTATTTGGTGTATATTGCCGTATTCAACTGGTTTGAACCACAGATGTAGCACTGCTGTAAATTGGTAATAGTGCCTGATATGATCCACCTACAGA                                                                                             ]
[+] EMBL CF333887             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               CAATTCAGGAGCTGAAAAATGAAGAAAATACCGAGAAGCAAGAAGTGCAAGCAAGTTGATCGGTCATAAACTTATACTGCTGGTCTGTGTGAAAATTAGCACATCTATTTGGTGTATATTGCCGTATTCAACTGGTTTGAACCACAGATGTTGCACTGCTGTAAATTGGTAATAGTGCCTGATATGATCCACCTACAGAGGCCGAGTACAAAATTTTGAGTCACCATCTTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]


>consensus_8197#0 AAATTATTTTTCTCTTAACGGCCCCCAAACCCTGAAACGTTTCAACCGAAGTTAGGGTCC ANCGGCCGAAAGAGCACCGCACGTCGCNCGTTGTCCGGTCNCCCCCGGCGGCCCTTTAAA ATCCGGAGGACCGAGTACCGTCCACGCCCGGTCGTACTTATAACCGCATCAGGTCTCCAA GGTGAACACCTCTGGCCAATGGAACAATGTAGGCAAGGNAAGTCGGCAAAACGGATCCGT AACTTCGGGAAAAGGATTGGCTNTGAGGGCTGGGCTCGGGGGTCCCGGCCCCGAACCCGT CGGCTGCCGGCGGACTGCTCGAGCTGCTCGCGCGGCGAGAGCGGGCCGCCGCGTGCCGGC CGGGGGACGGACCGGGANACGCCCCCTCGGGGGCCTTCCCCGGGCGTCGAACAGCCGACT CAGAACTGGTACGGACAAGGGGAATCCGACTGTTTAATTAAAACAAAGCATTGCGATGGT CCTCGCGGATGCTGAACACATCAAAGCAATCTTTGGGGCAACATTCTGGCTCCAATTCAG GACGGTCGACACCAGTTGCTCCTGCTGATGGAATATCTGCTAGCAGTTCAGTAGTAGAGA GTGAAGTGAGTAACATGACTACAATTCAGGAGCTGAAAAATGAAGAAAATACCGAGAAGC AAGAAGTGCAAGCAAGTTGATCGGTCATAAACTTATACTGCTGGTCTGTGTGAAAATTAG CACATCTATTTGGTGTATATTGCCGTATTCAACTGGTTTGAACCACAGATGTAGCACTGC TGTAAATTGGTAATAGTGCCTGATATGATCCACCTACAGAGGCCGAGTACAAAATTTTGA GTCACCATCTTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA AAAAAAAAAAAAA



clustalw multiple alignements is not computed in this case


Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)