These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_820#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1942 fasta sequence [ACGCCGCTGAGGACGACGACGACGACGAGCTGTACGAGCGGCTCCGCCTCGACGCCTTCCACCGCGTTTGGTCCAAGATCCAGTCCACCATCAATGAGGTTCTTCGGGGGATCAGCCTCAAGCTGTTCGACCAGGTGCTGCGATGGGTGCAGGAATCCTTCTCCGCAGTCCGCTCCATTGCGAGACCTTCCGCAGCCGAGGTGCGGCAGCCATACCCTCTCCTCACCGATGTGATCTGCAGGAAGATACCGACGGCTTTTGTTCTCACCAAGAATGCGGAGTTCGTTGACGACATCACGACATTCCGGGATCTTGCAGAGTATGTTGAGTCCAATGGATGTCACCTGGCCAAGCTGTCGGCGACTGAATTATCGGAAAAAAATGGAGTTGGTTGTTGCTTCAGGAGCTTGTTGAGGCAGCTACTTTCAGATGTTCCAGATGTAGCGGATATATTTGCACTTGCATCTTGGTACTCTGCAGCTGAGAACTATGATCAGCCTATAGTCGTCGTAATTGATGATTTAGAGCAATGCTCTGGTGATGTCCTGGGAGAGCTTGTGATGATGCTAAGCGAGTGGGTGATTAAAATTCCCATCTTCTTTGTGATGGGGATCGCAACCACCCTTGACGCACCAAGGAAACTACTCTCATCAGAAGCTCTTCAAAGATTAGAGCCGTGCAAGCTGACCTTGGGGTCTCCTTCTGATAGAATGAACGCACTTGTTGAGGCTATCCTTGTCAAACCATGTGCTGGATTCTGTATCAGTCATGAAGTTGCAGTTTTCCTTAGAAATTACTTTTTCAAGCATGATGGGACCATAACATCTTTTATTAGTGCTCTCAAGCTTGCTTGTAGTAAGCACTTCTCTGTCGAACCTCTGAGCTTCTTGTGCATGGGAATGCTTGAAGAGGATCGTGAGAACTTCTGGCATGATAAGTTTAATGCACTACCCCAAGAATTGCGGAAATATGCATCTGGTCTCCCGTCATGCACAAGGGAAAAGGACTCAACCAAGTCTGGCGACAATATGGTTGACGGGTTGTCTGAGCTTATGAATATTCAAAAAGATTGGAGTTCAGTTCTCTTGTGCTTGTATGAAGCTGGAAAACATGGTAAAGTGCAACTTTTGGATATTTTCTGTGAGGCTGTAAACCCTGACCTGCACACTCAGAAGGCACCCAATCTACCAAATGAGAAGTCAGGAACTAGTAGAAGATTTATAGATCAGGTGATGGATACAATAAGGTACCTTCCAGTGGAAACACTATTTTGTCTTCTAGAAGTTTGGAGCATCCATCTAAACGGGATGGATAAGATAACAAACAAGGCGAAAGAGCTTCAGTCCACCACAATCAGTACAGACAGTGTGAGGATCACAAAGGATAAGTGGCCTAGGAGATCAACAAATAGTACTGGAAATAGTACAGTAGCACTGAATGATAAAGTGGCTATGCTGTTGGATGATGTTACCAGGAAATTTCTGGTCTCTGTTGAGTGTTTACCTTTTCATGAAATCGTCTGTTTCAAGAATGTTAGCATTCTTCAATCTGCTTTAATTGGAAATCCGAGAAGAATGGTCCAGCTTGATCTAGTCAAGTCACACAAACATCTTAAATGCTCTTGCTGCAGGAAGAATGGAATTGCTGTGTCGGCATCCATGCATGATACATCAATTATGTGCAATCTAGCCCAAGAATATGGTGATGTAATCAACCTTCATGACTGGTACATATCTTTCGATGGCATTATCAATAGCGTGCATTCAAAAATCAAAAGGAAACCGCACACATCTCCCTCGAAAAAGAAATCAAAACCCGTTGCTGCGGAGAGTGAAGCCATGATCCAAGCAAGGTTTTGCAGAGCTGTCACCGAGCTACAGATCACCGGACTTCTTCGGATGCCGAGCAAGAGAAGGCCAGATCTTGTGCAGAGAATCGCATT] [+] EMBL AB100408 [ACGCCGCTGAGGACGACGACGACGACGAGCTGTACGAGCGGCTCCGCCTCGACGCCTTCCACCGCGTTTGGTCCAAGATCCAGTCCACCATCAATGAGGTTCTTCGGGGGATCAGCCTCAAGCTGTTCGACCAGGTGCTGCGATGGGTGCAGGAATCCTTCTCCGCAGTCCGCTCCATTGCGAGACCTTCCGCAGCCGAGGTGCGGCAGCCATACCCTCTCCTCACCGATGTGATCTGCAGGAAGATACCGACGGCTTTTGTTCTCACCAAGAATGCGGAGTTCGTTGACGACATCACGACATTCCGGGATCTTGCAGAGTATGTTGAGTCCAATGGATGTCACCTGGCCAAGCTGTCGGCGACTGAATTATCGGAAAAAAATGGAGTTGGTTGTTGCTTCAGGAGCTTGTTGAGGCAGCTACTTTCAGATGTTCCAGATGTAGCGGATATATTTGCACTTGCATCTTGGTACTCTGCAGCTGAGAACTATGATCAGCCTATAGTCGTCGTAATTGATGATTTAGAGCAATGCTCTGGTGATGTCCTGGGAGAGCTTGTGATGATGCTAAGCGAGTGGGTGATTAAAATTCCCATCTTCTTTGTGATGGGGATCGCAACCACCCTTGACGCACCAAGGAAACTACTCTCATCAGAAGCTCTTCAAAGATTAGAGCCGTGCAAGCTGACCTTGGGGTCTCCTTCTGATAGAATGAACGCACTTGTTGAGGCTATCCTTGTCAAACCATGTGCTGGATTCTGTATCAGTCATGAAGTTGCAGTTTTCCTTAGAAATTACTTTTTCAAGCATGATGGGACCATAACATCTTTTATTAGTGCTCTCAAGCTTGCTTGTAGTAAGCACTTCTCTGTCGAACCTCTGAGCTTCTTGTGCATGGGAATGCTTGAAGAGGATCGTGAGAACTTCTGGCATGATAAGTTTAATGCACTACCCCAAGAATTGCGGAAATATGCATCTGGTCTCCCGTCATGCACAAGGGAAAAGGACTCAACCAAGTCTGGCGACAATATGGTTGACGGGTTGTCTGAGCTTATGAATATTCAAAAAGATTGGAGTTCAGTTCTCTTGTGCTTGTATGAAGCTGGAAAACATGGTAAAGTGCAACTTTTGGATATTTTCTGTGAGGCTGTAAACCCTGACCTGCACACTCAGAAGGCACCCAATCTACCAAATGAGAAGTCAGGAACTAGTAGAAGATTTATAGATCAGGTGATGGATACAATAAGGTACCTTCCAGTGGAAACACTATTTTGTCTTCTAGAAGTTTGGAGCATCCATCTAAACGGGATGGATAAGATAACAAACAAGGCGAAAGAGCTTCAGTCCACCACAATCAGTACAGACAGTGTGAGGATCACAAAGGATAAGTGGCCTAGGAGATCAACAAATAGTACTGGAAATAGTACAGTAGCACTGAATGATAAAGTGGCTATGCTGTTGGATGATGTTACCAGGAAATTTCTGGTCTCTGTTGAGTGTTTACCTTTTCATGAAATCGTCTGTTTCAAGAATGTTAGCATTCTTCAATCTGCTTTAATTGGAAATCCGAGAAGAATGGTCCAGCTTGATCTAGTCAAGTCACACAAACATCTTAAATGCTCTTGCTGCAGGAAGAATGGAATTGCTGTGTCGGCATCCATGCATGATACATCAATTATGTGCAATCTAGCCCAAGAATATGGTGATGTAATCAACCTTCATGACTGGTACATATCTTTCGATGGCATTATCAATAGCGTGCATTCAAAAATCAAAAGGAAACCGCACACATCTCCCTCGAAAAAGAAATCAAAACCCGTTGCTGCGGAGAGTGAAGCCATGATCCAAGCAAGGTTTTGCAGAGCTGTCACCGAGCTACAGATCACCGGACTTCTTCGGATGCCGAGCAAGAGAAGGCCAGATCTTGTGCAGAGAATCGCATT] consensusID : consensus_820#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 457 fasta sequence [GCCGCTATTGAAGGGCACTCGTATGGATTGTTAGTGCGTCAGAATTCACATACTCGAATTACAAAAATTACAAGCTTGATGAGTTAGGCTGCATCAGATGTACAGAGAACAAAGCCGAGAACTAATGCTACTGACTGCAAGAATAAAAGACAATATCCAGTATGCAGTGCAAACAAGCAGTCATAAATTCCAAATGGGCAACGGTAGCTGCTTCATTTTGTCAACCGAATATCAAGTTTCCAGCCGTCGTTGGGGTTTCTGAATAATCCATATTTCCTCCATTTGCACGATAACATCATATAAACTCACATGCCATCATCATTCATCAGCAACCGCCATGTGCAAAAGCTGTGAGCATCACAAGTCTGAAAAACACTGGTTTGCAGTTGGTAAACTAGCGTTGAAGGTCTCAAAGGCCGAATGCGATTCTCTGCACAAGATCTGGCCTTCTCTTGCT] [+] EMBL AU225451 [GCCGCTATTGAAGGGCACTCGTATGGATTGTTAGTGCGTCAGAATTCACATACTCGAATTACAAAAATTACAAGCTTGATGAGTTAGGCTGCATCAGATGTACAGAGAACAAAGCCGAGAACTAATGCTACTGACTGCAAGAATAAAAGACAATATCCAGTATGCAGTGCAAACAAGCAGTCATAAATTCCAAATGGGCAACGGTAGCTGCTTCATTTTGTCAACCGAATATCAAGTTTCCAGCCGTCGTTGGGGTTTCTGAATAATCCATATTTCCTCCATTTGCACGATAACATCATATAAACTCACATGCCATCATCATTCATCAGCAACCGCCATGTGCAAAAGCTGTGAGCATCACAAGTCTGAAAAACACTGGTTTGCAGTTGGTAAACTAGCGTTGAAGGTCTCAAAGGCCGAATGCGATTCTCTGCACAAGATCTGGCCTTCTCTTGCT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_820#0 ACGCCGCTGAGGACGACGACGACGACGAGCTGTACGAGCGGCTCCGCCTCGACGCCTTCC 60 consensus_820#1 ------------------------------------------------------------ consensus_820#0 ACCGCGTTTGGTCCAAGATCCAGTCCACCATCAATGAGGTTCTTCGGGGGATCAGCCTCA 120 consensus_820#1 ------------------------------------------------------------ consensus_820#0 AGCTGTTCGACCAGGTGCTGCGATGGGTGCAGGAATCCTTCTCCGCAGTCCGCTCCATTG 180 consensus_820#1 ------------------------------------------------------------ consensus_820#0 CGAGACCTTCCGCAGCCGAGGTGCGGCAGCCATACCCTCTCCTCACCGATGTGATCTGCA 240 consensus_820#1 ------------------------------------------------------------ consensus_820#0 GGAAGATACCGACGGCTTTTGTTCTCACCAAGAATGCGGAGTTCGTTGACGACATCACGA 300 consensus_820#1 ------------------------------------------------------------ consensus_820#0 CATTCCGGGATCTTGCAGAGTATGTTGAGTCCAATGGATGTCACCTGGCCAAGCTGTCGG 360 consensus_820#1 ------------------------------------------------------------ consensus_820#0 CGACTGAATTATCGGAAAAAAATGGAGTTGGTTGTTGCTTCAGGAGCTTGTTGAGGCAGC 420 consensus_820#1 ------------------------------------------------------------ consensus_820#0 TACTTTCAGATGTTCCAGATGTAGCGGATATATTTGCACTTGCATCTTGGTACTCTGCAG 480 consensus_820#1 ------------------------------------------------------------ consensus_820#0 CTGAGAACTATGATCAGCCTATAGTCGTCGTAATTGATGATTTAGAGCAATGCTCTGGTG 540 consensus_820#1 ------------------------------------------------------------ consensus_820#0 ATGTCCTGGGAGAGCTTGTGATGATGCTAAGCGAGTGGGTGATTAAAATTCCCATCTTCT 600 consensus_820#1 ------------------------------------------------------------ consensus_820#0 TTGTGATGGGGATCGCAACCACCCTTGACGCACCAAGGAAACTACTCTCATCAGAAGCTC 660 consensus_820#1 ------------------------------------------------------------ consensus_820#0 TTCAAAGATTAGAGCCGTGCAAGCTGACCTTGGGGTCTCCTTCTGATAGAATGAACGCAC 720 consensus_820#1 ------------------------------------------------------------ consensus_820#0 TTGTTGAGGCTATCCTTGTCAAACCATGTGCTGGATTCTGTATCAGTCATGAAGTTGCAG 780 consensus_820#1 ------------------------------------------------------------ consensus_820#0 TTTTCCTTAGAAATTACTTTTTCAAGCATGATGGGACCATAACATCTTTTATTAGTGCTC 840 consensus_820#1 ------------------------------------------------------------ consensus_820#0 TCAAGCTTGCTTGTAGTAAGCACTTCTCTGTCGAACCTCTGAGCTTCTTGTGCATGGGAA 900 consensus_820#1 ------------------------------------------------------------ consensus_820#0 TGCTTGAAGAGGATCGTGAGAACTTCTGGCATGATAAGTTTAATGCACTACCCCAAGAAT 960 consensus_820#1 ------------------------------------------------------------ consensus_820#0 TGCGGAAATATGCATCTGGTCTCCCGTCATGCACAAGGGAAAAGGACTCAACCAAGTCTG 1020 consensus_820#1 --------------------------------------------GCCGCTATTGAAG--G 14 * * * * * * consensus_820#0 GCGACAATATGG-TTGACGGGTTGTCTGAGCTTATGAATATTCAAAAAGATTGGAGTTCA 1079 consensus_820#1 GCACTCGTATGGATTGTTAGTGCGTCAGAATTCAC--ATACTCGAATTACAAAAATTACA 72 ** ***** *** * *** ** * * *** ** ** * * ** consensus_820#0 GTTCTCTTGTGCTTGTATGAAGCTGGAAAACATGGTAAAGTGC---AACTTTTGGATATT 1136 consensus_820#1 AGCTTGATGAGTTAGGCTGCATCAGATGTACAGAGAACAAAGCCGAGAACTAATGCTACT 132 * ** * * * ** * * * *** * * * ** * * * ** * consensus_820#0 TTCTGTGAGGCTGTAA-ACCCTGACCTGCACACTCAGAAGGCACCCAATCTACCAAATGA 1195 consensus_820#1 GACTGCAAGAATAAAAGACAATATCCAGTATGCAGTGCAAACAAGCAGTC--ATAAATTC 190 *** ** * ** ** * ** * * * * * ** ** ** **** consensus_820#0 GAAGTCAGGAACTAGTAGAAGATTTATAGATCAGGTGATGGATACAATAAGGTACCTTCC 1255 consensus_820#1 CAAATGGGCAAC-GGTAGCTGCTTCAT---TTTGTCAACCGA-ATATCAAGTTTCCAGCC 245 ** * * *** **** * ** ** * * * ** * * *** * ** ** consensus_820#0 AGTGGAAACACTATTTTGTCTTCTAGAAGTTTGGAGCATCCATCTAAACGGGATGGATAA 1315 consensus_820#1 GTCGTTGGGGTTTCTGAATAATCCATA--TTT----CCTCCATTTGCACGATAACATCAT 299 * * * * ** * * *** * ***** * *** * * consensus_820#0 GATAACAAACAAGGCGAAAGAGCTTCAGTCCACCACAATCA-GTACAGACAGTGTGAGGA 1374 consensus_820#1 ATAAACTCACATGCC--ATCATCATTCATCAGCAACCGCCATGTGCAAAAGCTGTGAGCA 357 *** *** * * * * * * ** * ** ** ** ** * ****** * consensus_820#0 TCACAAAGGATAAGTGGCCTAGGAGATCAACAAATAGTACTGGAAATAGTACAGTAGCAC 1434 consensus_820#1 TCACAA----------GTCTGAAAAAC-----ACTGGT-TTGCAGTTGGTAAACTAGCGT 401 ****** * ** * * * * ** ** * * *** * **** consensus_820#0 TGAATGATAAAGTGGCTATGCTGTTGGATGATGTTACCAGGA-AATTTCTGGTCTCTGTT 1493 consensus_820#1 TGAAGGTCTCAAAGGCC--------GAATGCGATTCTCTGCACAAGATCTGGCCTTCTCT 453 **** * * *** * *** ** * * * ** ***** ** * consensus_820#0 GAGTGTTTACCTTTTCATGAAATCGTCTGTTTCAAGAATGTTAGCATTCTTCAATCTGCT 1553 consensus_820#1 TGCT-------------------------------------------------------- 457 * consensus_820#0 TTAATTGGAAATCCGAGAAGAATGGTCCAGCTTGATCTAGTCAAGTCACACAAACATCTT 1613 consensus_820#1 ------------------------------------------------------------ consensus_820#0 AAATGCTCTTGCTGCAGGAAGAATGGAATTGCTGTGTCGGCATCCATGCATGATACATCA 1673 consensus_820#1 ------------------------------------------------------------ consensus_820#0 ATTATGTGCAATCTAGCCCAAGAATATGGTGATGTAATCAACCTTCATGACTGGTACATA 1733 consensus_820#1 ------------------------------------------------------------ consensus_820#0 TCTTTCGATGGCATTATCAATAGCGTGCATTCAAAAATCAAAAGGAAACCGCACACATCT 1793 consensus_820#1 ------------------------------------------------------------ consensus_820#0 CCCTCGAAAAAGAAATCAAAACCCGTTGCTGCGGAGAGTGAAGCCATGATCCAAGCAAGG 1853 consensus_820#1 ------------------------------------------------------------ consensus_820#0 TTTTGCAGAGCTGTCACCGAGCTACAGATCACCGGACTTCTTCGGATGCCGAGCAAGAGA 1913 consensus_820#1 ------------------------------------------------------------ consensus_820#0 AGGCCAGATCTTGTGCAGAGAATCGCATT 1942 consensus_820#1 ----------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||