These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8204#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 676 fasta sequence [TTTTTTTTTTTTTTTTTTTTTTTTTTTCATGAAATTTATTATGATATATGATTTTGATTTGGAATCTTCCAGCAGAAAAGCATCGGAATTGAGCACGATAATTGCACAAAACTAAGATTAACAGGGTAGTATGTTCAGTTACTAATAACATATTCAACTCACGAAAACATGTGAGTTCCCAAAATCCCACCTAGCCAAAACACTGGTCCGATGGCAATGGACCCGGGAGCGACCCAACCTCGAAGAACTGGAACCCGAAGACGACAGCAATGGCAGCGGCAGCTAGATACGACACGCCCTCTGCGGCGCCGAGGAGTCCGAACGGCCCGGCCGGGAGGCCCGACCCTGTGCGCACCTTCGTCGTCAGCGACCACCCAATCAGCGCCGCCACCACAAGGTAGCTAACACCCTCCGCTGCGCCGAGAGCGCCACCGGGGCCCGGTGGGAGGCCGCAGCCCGTTGTCTTGAGCGTGTAGAGGGACCAGGCAACGACCGAGCTAGACGCCAGCCCGGCCGCACCGGCGGCGAGCTCGAGGGTGCTGTTGCCACCGCTAGGCTCGGCCTTGCACGTGGTCGTGAGCCGTCTGGTGCCGCGTCGGAGAATATCGCGGCTAGGAGTTGATGTCGTGGAGACGCCTGGTGCAGTTGCTGGGAAGAGGGGGTGGAGGGTTAAGGA] [-] EMBL CA754448 [TTTTTTTTTTTTTTTTTTTTTTTTTTTCATGAAATTTATTATGATATATGATTTTGATTTGGAATCTTCCAGCAGAAAAGCATCGGAATTGAGCACGATAATTGCACAAAACTAAGATTAACAGGGTAGTATGTTCAGTTACTAATAACATATTCAACTCACGAAAACATGTGAGTTCCCAAAATCCCACCTAGCCAAAACACTGGTCCGATGGCAATGGACCCGGGAGCGAC ] [-] EMBL AK063872 [ ATTTATTATGATATATGATTTTGATTTGGAATCTTCCAGCAGAAAAGCATCGGAATTGAGCACGATAATTGCACAAAACTAAGATTAACAGGGTAGTATGTTCAGTTACTAATAACATATTCAACTCACGAAAACATGTGAGTTCCCAAAATCCCACCTAGCCAAAACACTGGTCCGATGGCAATGGACCCGGGAGCGACCCAACCTCGAAGAACTGGAACCCGAAGACGACAGCAATGGCAGCGGCAGCTAGATACGACACGCCCTCTGCGGCGCCGAGGAGTCCGAACGGCCCGGCCGGGAGGCCCGACCCTGTGCGCACCTTCGTCGTCAGCGACCACCCAATCAGCGCCGCCACCACAAGGTAGCTAACAC ] [+] EMBL CB683007 [ TATGATTTTGATTTGGAATCTTCCAGCAGAAAAGCATCGGAATTGAGCACGATAATTGCACAAAACTAAGATTAACAGGGTAGTATGTTCAGTTACTAATAACATATTCAACTCACGAAAACATGTGAGTTCCCAAAATCCCACCTAGCCAAAACACTGGTCCGATGGCAATGGACCCGGGAGCGACCCAACCTCGAAGAACTGGAACCCGAAGACGACAGCAATGGCAGCGGCAGCTAGATACGACACGCCCTCTGCGGCGCCGAGGAGTCCGAACGGCCCGGCCGGGAGGCCCGACCCTGTGCGCACCTTCGTCGTCAGCGACCACCCAATCAGCGCCGCCACCACAAGGTAGCTAACACCCTCCGCTGCGCCGAGAGCGCCACCGGGGCCCGGTGGGAGGCCGCAGCCCGTTGTCTTGAGCGTGTAGAGGGACCAGGCAACGACCGAGCTAGACGCCAGCCCGGCCGCACCGGCGGCGAGCTCGAGGGTGCTGTTGCCACCGCTAGGCTCGGCCTTGCACGTGGTCGTGAGCCGTCTGGTGCCGCGTCGGAGAATATCGCGGCTAGGAGTTGATGTCGTGGAGACGCCTGGTGCAGTTGCTGGGAAGAGGGGGTGGAGGGTTAAGGA] [-] EMBL CB683006 [ ATGATTTTGATTTGGAATCTTCCAGCAGAAAAGCATCGGAATTGAGCACGATAATTGCACAAAACTAAGATTAACAGGGTAGTATGTTCAGTTACTAATAACATATTCAACTCACGAAAACATGTGAGTTCCCAAAATCCCACCTAGCCAAAACACTGGTCCGATGGCAATGGACCCGGGAGCGACCCAACCTCGAAGAACTGGAACCCGAAGACGACAGCAATGGCAGCGGCAGCTAGATACGACACGCCCTCTGCGGCGCCGAGGAGTCCGAACGGCCCGGCCGGGAGGCCCGACCCTGTGCGCACCTTCGTCGTCAGCGACCACCCAATCAGCGCCGCCACCACAAGGTAGCTAACAC ] consensusID : consensus_8204#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 184 fasta sequence [TTTTTTTTGCAAAACTAAGATTAACAGGTAGTATGTTCAGTTACTAATAACATATTCAACTCACGAAAACATGTGAGTTCCCAAAATCCCACCTAGCCAAAACACTGGTCCTGATGGCAATGGACCTGGGAGCTGACTGGACGCTGTGGGTCTGACCCTGGTGAATTCCTGGACCTGTGTACCT] [-] EMBL BI797407 [TTTTTTTTGCAAAACTAAGATTAACAGGTAGTATGTTCAGTTACTAATAACATATTCAACTCACGAAAACATGTGAGTTCCCAAAATCCCACCTAGCCAAAACACTGGTCCTGATGGCAATGGACCTGGGAGCTGACTGGACGCTGTGGGTCTGACCCTGGTGAATTCCTGGACCTGTGTACCT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_8204#0 TTTTTTTTTTTTTTTTTTTTTTTTTTTCATGAAATTTATTATGATATATGATTTTGATTT 60 consensus_8204#1 ------------------------------------------------------------ consensus_8204#0 GGAATCTTCCAGCAGAAAAGCATCGGAATTGAGCACGATAATTGCACAAAACTAAGATTA 120 consensus_8204#1 -------------------------------------TTTTTTTTGCAAAACTAAGATTA 23 * ** ************** consensus_8204#0 ACAGGGTAGTATGTTCAGTTACTAATAACATATTCAACTCACGAAAACATGTGAGTTCCC 180 consensus_8204#1 ACAGG-TAGTATGTTCAGTTACTAATAACATATTCAACTCACGAAAACATGTGAGTTCCC 82 ***** ****************************************************** consensus_8204#0 AAAATCCCACCTAGCCAAAACACTGGTCC-GATGGCAATGGACCCGGGAGC-GACCCAAC 238 consensus_8204#1 AAAATCCCACCTAGCCAAAACACTGGTCCTGATGGCAATGGACCTGGGAGCTGACTGGAC 142 ***************************** ************** ****** *** ** consensus_8204#0 CTCGAAGAACTGGAACCCGAAGACGACAGCAATGGCAGCGGCAGCTAGATACGACACGCC 298 consensus_8204#1 GCTGTGGGTCTGACCCTGGTGAATTCCTGGACCTGT----GTACCT-------------- 184 * * *** * * * * * * * * * ** consensus_8204#0 CTCTGCGGCGCCGAGGAGTCCGAACGGCCCGGCCGGGAGGCCCGACCCTGTGCGCACCTT 358 consensus_8204#1 ------------------------------------------------------------ consensus_8204#0 CGTCGTCAGCGACCACCCAATCAGCGCCGCCACCACAAGGTAGCTAACACCCTCCGCTGC 418 consensus_8204#1 ------------------------------------------------------------ consensus_8204#0 GCCGAGAGCGCCACCGGGGCCCGGTGGGAGGCCGCAGCCCGTTGTCTTGAGCGTGTAGAG 478 consensus_8204#1 ------------------------------------------------------------ consensus_8204#0 GGACCAGGCAACGACCGAGCTAGACGCCAGCCCGGCCGCACCGGCGGCGAGCTCGAGGGT 538 consensus_8204#1 ------------------------------------------------------------ consensus_8204#0 GCTGTTGCCACCGCTAGGCTCGGCCTTGCACGTGGTCGTGAGCCGTCTGGTGCCGCGTCG 598 consensus_8204#1 ------------------------------------------------------------ consensus_8204#0 GAGAATATCGCGGCTAGGAGTTGATGTCGTGGAGACGCCTGGTGCAGTTGCTGGGAAGAG 658 consensus_8204#1 ------------------------------------------------------------ consensus_8204#0 GGGGTGGAGGGTTAAGGA 676 consensus_8204#1 ------------------ |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||