Home
Who am I
Technology
EST Assembly
Contact

These datas are free for academic use only, please contact me for any other use.

Oryza sativa
cluster # 8208 cluster # 8208       Sequences # 5       consensus # 1


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_8208#0 length = 1188 sequences # 5  

consensusID : consensus_8208#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 5
consensus length = 1188
fasta sequence
                              [CTCGACGGATCGCACGGCCCTCGTGCCGGCGACGCATCATTCAAATTTCTGCCCTATCAACTTTCGATGGTAGGATAGGGGCCTACCATGGTGGTGACGGGTGACGGAGAATTAGGGTTCGATTCCGGAGAGGGAGCCTGAGAAACGGCTACCACATCCAAGGAAGGCAGCAGGCGCGCAAATTACCCAATCCTGACACGGGGAGGTAGTGACAATAAATAACAATACCGGGCGCTTTAGTGTCTGGTAATTGGAATGAGTACAATCTAAATCCCTTAACGAGGATCCATTGGAGGGCAAGTCTGGTGCCAGCAGCCGCGGTAATTCCAGCTCCAATAGCGTATATTTAAGTTGTTGCAGTTAAAAAGAGCAGTACCGCAACGTTAGAGAAAGCAAAGCAAGCAGCCCCGGGTGATCAACAACCTCAAAGATGGAGCCGGTGGGCAGCATCGTGGGCGCGGTGCCGAA-GTGGCTTCGGCGATCGCCAAGGCAGTGAAGACGGCTCGCCGGAACAAGACCAGGTGCCGGGAGCTAGCCCAGCGCGTGAAGGAAGTCGACGACATCCTGAGGGAGTACAAGAAGGTGGCCATGGGAGACGCGGCGGCGACGACGCGG-AAGATTCTGGGCCGTCTCAAGGACGCCCTCGACGACGCGCTCAAGCTCGTCGAGTCCTGCGGCAGGAGCAGGGACGGTCTGCTCTTCAGGCTCCACAGGTTCGTGGCCAGCGACGGGCTCGCCGCCAAGCTCGATGACGTCAACAGTAGGATCAACAACTGCCTCATCGCCCTCCAGGCCG-TCAACGTTGCCCACCTACAGAAGAAGATGGACCGCCACCTCGCCGTCGCCGCTGGTGGGGGCGATCACCGCCGCACAAACAATCCAAGGGAGATCAACGCCGGCAAGAGCGGCAACAAAGGTAACAAGGGCGGGCAGCAGCACAAGCAGAACGGAGGGAAGGGCGGCAAACGGAGGAAAGGCAAGAAGGCGGCCGGGCCACCGCCGCAGCCGCAGCCATGCACCCCCACCGGCGCCGTCTTCCCTTACTACCTTGTCCACTCCATGGAGGAGGATCCCACCTCCTGCTCCGTGATGTGATCCACGCGCGCGTGCACGGAGGAAGCCATGCAAGCATCTAAGCTCCGGCAGCTGCGCAGGCGCAGCTCGTGCTTGATCCATCACCACCAGTGA]

[+] EMBL AK110901             [CTCGACGGATCGCACGGCCCTCGTGCCGGCGACGCATCATTCAAATTTCTGCCCTATCAACTTTCGATGGTAGGATAGGGGCCTACCATGGTGGTGACGGGTGACGGAGAATTAGGGTTCGATTCCGGAGAGGGAGCCTGAGAAACGGCTACCACATCCAAGGAAGGCAGCAGGCGCGCAAATTACCCAATCCTGACACGGGGAGGTAGTGACAATAAATAACAATACCGGGCGCTTTAGTGTCTGGTAATTGGAATGAGTACAATCTAAATCCCTTAACGAGGATCCATTGGAGGGCAAGTCTGGTGCCAGCAGCCGCGGTAATTCCAGCTCCAATAGCGTATATTTAAGTTGTTGCAGTTAAAAAGAGCAGTACCGCAACGTTAGAGAAAGCAAAGCAAGCAGCCCCGGGTGATCAACAACCTCAAAGATGGAGCCGGTGGGCAGCATCGTGGGCGCGGTGCCGAAGGTGGCTTCGGCGATCGCCAAGGCAGTGAAGACGGCTCGCCGGAACAAGACCAGGTGCCGGGAGCTAGCCCAGCGCGTGAAGGAAGTCGACGACATCCTGAGGGAGTACAAGAAGGTGGCCATGGGAGACGCGGCGGCGACGACGCGG AAGATTCTGGGCCGTCTCAAGGACGCCCTCGACGACGCGCTCAAGCTCGTCGAGTCCTGCGGCAGGAGCAGGGACGGTCTGCTCTTCAGGCTCCACAGGTTCGTGGCCAGCGACGGGCTCGCCGCCAAGCTCGATGACGTCAACAGTAGGATCAACAACTGCCTCATCGCCCTCCAGGCCG TCAACGTTGCCCACCTACAGAAGAAGATGGACCGCCACCTCGCCGTCGCCGCTGGTGGGGGCGATCACCGCCGCACAAACAATCCAAGGGAGATCAACGCCGGCAAGAGCGGCAACAAAGGTAACAAGGGCGGGCAGCAGCACAAGCAGAACGGAGGGAAGGGCGGCAAACGGAGGAAAGGCAAGAAGGCGGCCGGGCCACCGCCGCAGCCGCAGCCATGCACCCCCACCGGCGCCGTCTTCCCTTACTACCTTGTCCACTCCATGGAGGAGGATCCCACCTCCTGCTCCGTGATGTGATCCACGCGCGCGTGCACGGAGGAAGCCATGCAAGCATCTAAGCTCCGGCAGCTGCGCAGGCGCAGCTCGTGCTTGATCCATCACCACCAGTGA]
[+] EMBL OSC102881            [                                                                                                                                                                                                                                                                                                                                                                                                          AAAGCAAGCAGCCCCGGGTGATCAACAACCTCAAAGATGGAGCCGGTGGGCAGCATCNTGGGCGCGGTGCCGAA GTGGCTTCGGCGATCGCCAAGGCAGTTAAGACGGCTCGNCGGAACAAGACCAGGTGCCGGGAGCTAGCCCAGCGCGTNAAGGAAGTCGACGACATCCTNAGGGAGTACAAGAAGGTGGCC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          ]
[+] EMBL CA753990             [                                                                                                                                                                                                                                                                                                                                                                                                            AGCAAGCAGCCCCGGGTGATCAACAACCTCAAAGATGGAGCCGGTGGGCAGCATCGTGGGCGCGGTGCCGAAGGTGGCTTCGGCGATCGCCAAGGCAGTGAAGACGGCTCGCCGGAACAAGACCAGGTGCCGGGAGCTAGCCCAGCGCGTGAAGGAAGTCGACGACATCCTGAGGGAGTACAAGAAGGTGGCCATGGGAGACGCGGCGGCGACGACGCGG AAGATTCTGGGCCGTCTCAAGGACGCCCTCGACGACGCGCTCAAGCTCGTCGAGTCCTGCGGCAGGAGCAGGGACGGTCTGCTCTTCAGGCTCCACAGGTTCGTGGCCAGCGACGGGCTCGCCGCCAAGCTCGATGACGTCAACAGTAGGATCAACAACTGCCTCATCGCCCTCCAGGCCG TCAACGTTGCCCACCTACAGAAGAAGATGGACCGCCACCTCGCCGTCGCCGCTGGTGGGGGCGATCACCGCCGCACAAACAATCCAAGGGAGATCAACGCCGGCAAGAGCGGCAACAAAGGTAACAAGGGCGGGCAGCAGCACAAGCAGAACGGAGGGAAGGGCGGCAAACGGAGGAAAGGCAAGAAGGC                                                                                                                                                                                                          ]
[+] EMBL C96743               [                                                                                                                                                                                                                                                                                                                                                                                                             GCAAGCAGCCCCGGGTGATCAACAACCTCAAAGATGGAGCCGGTGGGCAGCATCGTGGGCGCGGTGCCGAA GTGGCTTCGGCGATCGCCAAGGCAGTGAAGACGGCTCGCCGGAACAAGACCAGGTGCCGGGAGCTAGCCCAGCGCGTGAAGGAAGTCGACGACATCCTGAGGGAGTACAAGAAGGTGGCCATGGGAGACGCGGCGGCGACGACGCGGAAAGATTCTGGGCCGTCTCAAGGACGCCCTCGACGACGCGCTCAAGCTCGTCGAGTCCTGCGGCAGGAGCAGGGACGGTCTGCTCTTCAGGCTCCACAGGTTCGTGGCCAGCGACGGGCTCGCCGCCAAGCTCGATGACGTCAACAGTAGGATCAACAACTGCCTCATCGCCCTCCAGGCCGTTCAACGTTGCCCACCTACAGAAGAAGATGGACCGCCACC                                                                                                                                                                                                                                                                                                                                                                 ]
[+] EMBL C28871               [                                                                                                                                                                                                                                                                                                                                                                                                                     CCCCGGGTGATCAACAACCTCAAAGATGGAGCCGGTGGGCAGCATCGTGGGCGCGGTGCCGAA GTGGCTTCGGCGATCGCCAAGGCAGTTAAGACGGCTCGCCGGAACAAGACCAGGTGCCGGGAGCTAGCCCAGCGCGTNAAGGAAGTCGACGACATCCTGAGGGAGTACAAGAAGGTGGCCATGGGAGACGCGGCGGCGACGACG GA AAGATTCTGGGCCGTCTCAAGGACGCCCTCGACGACGCGNTCAAGNTCGTCGAGTCCTTCGGCAGGAn                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          ]


>consensus_8208#0 CTCGACGGATCGCACGGCCCTCGTGCCGGCGACGCATCATTCAAATTTCTGCCCTATCAA CTTTCGATGGTAGGATAGGGGCCTACCATGGTGGTGACGGGTGACGGAGAATTAGGGTTC GATTCCGGAGAGGGAGCCTGAGAAACGGCTACCACATCCAAGGAAGGCAGCAGGCGCGCA AATTACCCAATCCTGACACGGGGAGGTAGTGACAATAAATAACAATACCGGGCGCTTTAG TGTCTGGTAATTGGAATGAGTACAATCTAAATCCCTTAACGAGGATCCATTGGAGGGCAA GTCTGGTGCCAGCAGCCGCGGTAATTCCAGCTCCAATAGCGTATATTTAAGTTGTTGCAG TTAAAAAGAGCAGTACCGCAACGTTAGAGAAAGCAAAGCAAGCAGCCCCGGGTGATCAAC AACCTCAAAGATGGAGCCGGTGGGCAGCATCGTGGGCGCGGTGCCGAAGTGGCTTCGGCG ATCGCCAAGGCAGTGAAGACGGCTCGCCGGAACAAGACCAGGTGCCGGGAGCTAGCCCAG CGCGTGAAGGAAGTCGACGACATCCTGAGGGAGTACAAGAAGGTGGCCATGGGAGACGCG GCGGCGACGACGCGGAAGATTCTGGGCCGTCTCAAGGACGCCCTCGACGACGCGCTCAAG CTCGTCGAGTCCTGCGGCAGGAGCAGGGACGGTCTGCTCTTCAGGCTCCACAGGTTCGTG GCCAGCGACGGGCTCGCCGCCAAGCTCGATGACGTCAACAGTAGGATCAACAACTGCCTC ATCGCCCTCCAGGCCGTCAACGTTGCCCACCTACAGAAGAAGATGGACCGCCACCTCGCC GTCGCCGCTGGTGGGGGCGATCACCGCCGCACAAACAATCCAAGGGAGATCAACGCCGGC AAGAGCGGCAACAAAGGTAACAAGGGCGGGCAGCAGCACAAGCAGAACGGAGGGAAGGGC GGCAAACGGAGGAAAGGCAAGAAGGCGGCCGGGCCACCGCCGCAGCCGCAGCCATGCACC CCCACCGGCGCCGTCTTCCCTTACTACCTTGTCCACTCCATGGAGGAGGATCCCACCTCC TGCTCCGTGATGTGATCCACGCGCGCGTGCACGGAGGAAGCCATGCAAGCATCTAAGCTC CGGCAGCTGCGCAGGCGCAGCTCGTGCTTGATCCATCACCACCAGTGA



clustalw multiple alignements is not computed in this case


Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)