These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8211#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 1289 fasta sequence [AAAAAGAGCTTTGAGTTGACTGACATGGCCGTGCTCTCCTCTTCCTCCCATGGCCTCCTCCACCCACCGCTCCGTCTCCTCGCCGCCGCCTCCGCCAGTAGCGGCAGCAGCTACTCGATTCCCCATGCGCGCCTCCGCCTCGCCGTCACTACTCCGTCGAGGCTACCTTCCCCCATCTCATCCTCGCCCGACCCACCGCCCGACGTCGCCCACGACGAAGACGAACAGGAAGGTCAGCACCACAAGGAGGAGCGGGACGAGCGGTACGGGTTCGAGATCCAGGTGCGCAAGCTGCCCAAGCGCAACCGCCGCCTCGTCCGCGCCCGGGTCCGCGTCGACGCCCCGCTCGACGCCGTCTGGGCCACGCTCACCGACTACGAGGGCCTCGCCGGCTTCATCCCCGGCCTCTCCGAGTGCCGCCTCCTCGACCAGTCCGACTGCTTCGCCCGCCTCTACCAGGTGGGTGAGCAGGATCTCGCGCTGGGTTTCAAGTTCAACGCCAGGGGCACCATCGACTGCTACGAGGGCGAATTGCAGCTGCTGCCCGCCGGAGCGCGGAGGAGGGAGATCGCCTTCAACATGATCGACGGCGACTTCAAGGTCTTCGAGGGCAACTGGTCCGTCCAGGAGGAGGTTGATGGTGGGGAAATATCAGCGGATCAGGAATTTCAGACTATACTTTCTTATGTGGTGGAACTGGAGCCGAAGCTCTGGGTTCCAGTGAGGCTACTGGAAGGGAGGATTTGTAATGAGATCAAGACCAACCTTTTTTCAATCAGAGAAGAAGCTCAGAGGATCCAGAGATTGCAAGATAAGAGAAATCCAT-GCTGAAGTT-TGGCAGTATGTTT-TCAGTGATTGGTCATCTCTTAAGGCTTCATCCCAATATTACACGTCCTTGATTCTCAAGAATACA-CTTCAGAAAGGGGGAAAATGGGCGAAGAAAGATGATGACGCGCTTCATGATGTTAGTGGAACACCCAAAATTATGACTTAGGTCACTGGGCATGTCTTGTGACAATTGGATTGGTTGATCTTTCTCA-ATAGAAGAGAGGAAAAGGCAAATGGATTATTTGGAATTCGGACA-GCT-TTGGACGTGCCTGACAGGCAAATGGATAGAGGGTCCCAAAACCTAATCTTGCTTGTATATCTAGGA-TTACCTTTTTGCCA-CTCAATGGAGAAATGA-TTAACGTTTCGTGATTAACTACACGATGTTGACATATATTGCAATTTTATTTGTAACCAATCCTAGGCAGAAAGCTGCTGAATTGGTACTCACTTTAAAAAAAAAA] [+] EMBL AK105975 [AAAAAGAGCTTTGAGTTGACTGACATGGCCGTGCTCTCCTCTTCCTCCCATGGCCTCCTCCACCCACCGCTCCGTCTCCTCGCCGCCGCCTCCGCCAGTAGCGGCAGCAGCTACTCGATTCCCCATGCGCGCCTCCGCCTCGCCGTCACTACTCCGTCGAGGCTACCTTCCCCCATCTCATCCTCGCCCGACCCACCGCCCGACGTCGCCCACGACGAAGACGAACAGGAAGGTCAGCACCACAAGGAGGAGCGGGACGAGCGGTACGGGTTCGAGATCCAGGTGCGCAAGCTGCCCAAGCGCAACCGCCGCCTCGTCCGCGCCCGGGTCCGCGTCGACGCCCCGCTCGACGCCGTCTGGGCCACGCTCACCGACTACGAGGGCCTCGCCGGCTTCATCCCCGGCCTCTCCGAGTGCCGCCTCCTCGACCAGTCCGACTGCTTCGCCCGCCTCTACCAGGTGGGTGAGCAGGATCTCGCGCTGGGTTTCAAGTTCAACGCCAGGGGCACCATCGACTGCTACGAGGGCGAATTGCAGCTGCTGCCCGCCGGAGCGCGGAGGAGGGAGATCGCCTTCAACATGATCGACGGCGACTTCAAGGTCTTCGAGGGCAACTGGTCCGTCCAGGAGGAGGTTGATGGTGGGGAAATATCAGCGGATCAGGAATTTCAGACTATACTTTCTTATGTGGTGGAACTGGAGCCGAAGCTCTGGGTTCCAGTGAGGCTACTGGAAGGGAGGATTTGTAATGAGATCAAGACCAACCTTTTTTCAATCAGAGAAGAAGCTCAGAGGATCCAGAGATTGCAAGATAAGAGAAATCCAT GCTGAAGTT TGGCAGTATGTTT TCAGTGATTGGTCATCTCTTAAGGCTTCATCCCAATATTACACGTCCTTGATTCTCAAGAATACA CTTCAGAAAGGGGGAAAATGGGCGAAGAAAGATGATGACGCGCTTCATGATGTTAGTGGAACACCCAAAATTATGACTTAGGTCACTGGGCATGTCTTGTGACAATTGGATTGGTTGATCTTTCTCA ATAGAAGAGAGGAAAAGGCAAATGGATTATTTGGAATTCGGACA GCT TTGGACGTGCCTGACAGGCAAATGGATAGAGGGTCCCAAAACCTAATCTTGCTTGTATATCTAGGA TTACCTTTTTGCCA CTCAATGGAGAAATGA TTAACGTTTCGTGATTAACTACACGATGTTGACATATATTGCAATTTTATTTGTAACCAATCCTAGGCAGAAAGCTGCTGAATTGGTAC ] [+] EMBL AK059198 [ AAGAGCTTTGAGTTGACTGACATGGCCGTGCTCTCCTCTTCCTCCCATGGCCTCCTCCACCCACCGCTCCGTCTCCTCGCCGCCGCCTCCGCCAGTAGCGGCAGCAGCTACTCGATTCCCCATGCGCGCCTCCGCCTCGCCGTCACTACTCCGTCGAGGCTACCTTCCCCCATCTCATCCTCGCCCGACCCACCGCCCGACGTCGCCCACGACGAAGACGAACAGGAAGGTCAGCACCACAAGGAGGAGCGGGACGAGCGGTACGGGTTCGAGATCCAGGTGCGCAAGCTGCCCAAGCGCAACCGCCGCCTCGTCCGCGCCCGGGTCCGCGTCGACGCCCCGCTCGACGCCGTCTGGGCCACGCTCACCGACTACGAGGGCCTCGCCGGCTTCATCCCCGGCCTCTCCGAGTGCCGCCTCCTCGACCAGTCCGACTGCTTCGCCCGCCTCTACCAGGTGGGTGAGCAGGATCTCGCGCTGGGTTTCAAGTTCAACGCCAGGGGCACCATCGACTGCTACGAGGGCGAATTGCAGCTGCTGCCCGCCGGAGCGCGGAGGAGGGAGATCGCCTTCAACATGATCGACGGCGACTTCAAGGTCTTCGAGGGCAACTGGTCCGTCCAGGAGGAGGTTGATGGTGGGGAAATATCAGCGGATCAGGAATTTCAGACTATACTTTCTTATGTGGTGGAACTGGAGCCGAAGCTCTGGGTTCCAGTGAGGCTACTGGAAGGGAGGATTTGTAATGAGATCAAGACCAACCTTTTTTCAATCAGAGAAGAAGCTCAGAGGATCCAGAGATTGCAAGATAAGAGAAATCCAT GCTGAAGTT TGGCAGTATGTTT TCAGTGATTGGTCATCTCTTAAGGCTTCATCCCAATATTACACGTCCTTGATTCTCAAGAATACA CTTCAGAAAGGGGGAAAATGGGCGAAGAAAGATGATGACGCGCTTCATGATGTTAGTGGAACACCCAAAATTATGACTTAGGTCACTGGGCATGTCTTGTGACAATTGGATTGGTTGATCTTTCTCA ATAGAAGAGAGGAAAAGGCAAATGGATTATTTGGAATTCGGACA GCT TTGGACGTGCCTGACAGGCAAATGGATAGAGGGTCCCAAAACCTAATCTTGCTTGTATATCTAGGA TTACCTTTTTGCCA CTCAATGGAGAAATGA TTAACGTTTCGTGATTAACTACACGATGTTGACATATATTGCAATTTTATTTGTAACCAATCCTAGGCAGAAAGCTGCTGA ] [+] EMBL BI813232 [ GAAGCTCAGAGTATCCAGAG TGCCAAGATAAGAGAAACCCATGGCTGAAGTTGTGCCAGTATGTTTCCCAGTGATTGGTCATCTCTTAAGGCTTCATCCCGATATTACACGTCCTTGATTCTCAAGAATACACCTTCAGAAAGGGGGAAAATGGGCGAAGAAAGATGATGACGCGCTTCATGAT TTAGTGGAACACCCAAAATTATGACTTAGGTCACT GGCATGTCTTGTGACAATTGGATTGGTTGATCTTTCTCA ATAGAAGAGAGGAAAA GCAAATGGATTATTTGGAATTCGGACA GCT TTGGACGTGCCTGACAGGCAAATGGATAGAGGGTCCCAAAACCTAATCTTGCTTGTATATCTAGGA TTACCTTTTTGCCA CTCAATGGAGAAATGA TTAACGTTTCGTGATTAACTACACGATGTTGACATAaagaaaaa ] [+] EMBL BI806762 [ TTT TCAGTGATTGGTCATCTCTTAAGGCTTCATCCCCATATTACACGTCCTTGATTCTCAAGAATACA CTTCAGAAAGGGGGAAAATGGGCGAAGAAAGATGATGACGCGCTTCATGATGTTAGTGGAACACCCCAAATTATGACTTAGGTCACTGGGCATGTCTTGTGACAATTGGATTGGTTGATCTTTCTCACATAGAAGAGAGGAAAAGGCGAATGGATTATTTGGAATTCGGACACGCTCTTGGACGTGCCTGACAGGCAAATGGATAGAGGGTCCCCAAACCTAATCTTGCTTGTATATCTAGGAGTTACCTTTTTGCCACCCCCATGGAGAAATGACTTAACGTTTCGTGATTAACTACNCGATGTTGACATATATTGCNATTTTATTTGTAACCCATCCTAGGCAGAAAGCTGCTGAATTGGTACTCACTTTAAAAAAAAAA] consensusID : consensus_8211#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 588 fasta sequence [ATACTTTCTTATGTGGTGGAACTGGAGCCGAAGCTCTGGGTTCCAGTGAGGCTACTGGAAGGGAGGATTTGTAATGAGATCAAGACCAACCTTTTTTCAATCAGAGAAGAAGCTCAGAGGATCCAGAGATTGCAAGATAAGTGATTGGTCATCTCTTAAGGCTTCATCCCAATATTACACGTCCTTGATTCTCAAGAATACACTTCAGAAAGGGGGAAAATGGGCGAAGAAAGATGATGACGCGCTTCATGATGTTAGTGGAACACCCAAAATTATGACTTAGGTCACTGGGCATGTCTTGTGACAATTGGATTGGTTGATCTTTCTCAATAGAAGAGAGGAAAAGGCAAATGGATTATTTGGAATTCGGACAGCTTTGGACGTGCCTGACAGGCAAATGGATAGAGGGTCCCAAAACCTAATCTTGCTTGTATATCTAGGATTACCTTTTTGCCACTCAATGGAGAAATGATTAACGTTTCGTGATTAACTACACGATGTTGACATATATTGCAATTTTATTTGTAACCAATCCTAGGCAGAAAGCTGCTGAATTGGTACTCACTTAAAAAAAAAAAAAAAAAAAAA] [+] EMBL CF306862 [ATACTTTCTTATGTGGTGGAACTGGAGCCGAAGCTCTGGGTTCCAGTGAGGCTACTGGAAGGGAGGATTTGTAATGAGATCAAGACCAACCTTTTTTCAATCAGAGAAGAAGCTCAGAGGATCCAGAGATTGCAAGATAAGTGATTGGTCATCTCTTAAGGCTTCATCCCAATATTACACGTCCTTGATTCTCAAGAATACACTTCAGAAAGGGGGAAAATGGGCGAAGAAAGATGATGACGCGCTTCATGATGTTAGTGGAACACCCAAAATTATGACTTAGGTCACTGGGCATGTCTTGTGACAATTGGATTGGTTGATCTTTCTCAATAGAAGAGAGGAAAAGGCAAATGGATTATTTGGAATTCGGACAGCTTTGGACGTGCCTGACAGGCAAATGGATAGAGGGTCCCAAAACCTAATCTTGCTTGTATATCTAGGATTACCTTTTTGCCACTCAATGGAGAAATGATTAACGTTTCGTGATTAACTACACGATGTTGACATATATTGCAATTTTATTTGTAACCAATCCTAGGCAGAAAGCTGCTGAATTGGTACTCACTTAAAAAAAAAAAAAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_8211#0 AAAAAGAGCTTTGAGTTGACTGACATGGCCGTGCTCTCCTCTTCCTCCCATGGCCTCCTC 60 consensus_8211#1 ------------------------------------------------------------ consensus_8211#0 CACCCACCGCTCCGTCTCCTCGCCGCCGCCTCCGCCAGTAGCGGCAGCAGCTACTCGATT 120 consensus_8211#1 ------------------------------------------------------------ consensus_8211#0 CCCCATGCGCGCCTCCGCCTCGCCGTCACTACTCCGTCGAGGCTACCTTCCCCCATCTCA 180 consensus_8211#1 ------------------------------------------------------------ consensus_8211#0 TCCTCGCCCGACCCACCGCCCGACGTCGCCCACGACGAAGACGAACAGGAAGGTCAGCAC 240 consensus_8211#1 ------------------------------------------------------------ consensus_8211#0 CACAAGGAGGAGCGGGACGAGCGGTACGGGTTCGAGATCCAGGTGCGCAAGCTGCCCAAG 300 consensus_8211#1 ------------------------------------------------------------ consensus_8211#0 CGCAACCGCCGCCTCGTCCGCGCCCGGGTCCGCGTCGACGCCCCGCTCGACGCCGTCTGG 360 consensus_8211#1 ------------------------------------------------------------ consensus_8211#0 GCCACGCTCACCGACTACGAGGGCCTCGCCGGCTTCATCCCCGGCCTCTCCGAGTGCCGC 420 consensus_8211#1 ------------------------------------------------------------ consensus_8211#0 CTCCTCGACCAGTCCGACTGCTTCGCCCGCCTCTACCAGGTGGGTGAGCAGGATCTCGCG 480 consensus_8211#1 ------------------------------------------------------------ consensus_8211#0 CTGGGTTTCAAGTTCAACGCCAGGGGCACCATCGACTGCTACGAGGGCGAATTGCAGCTG 540 consensus_8211#1 ------------------------------------------------------------ consensus_8211#0 CTGCCCGCCGGAGCGCGGAGGAGGGAGATCGCCTTCAACATGATCGACGGCGACTTCAAG 600 consensus_8211#1 ------------------------------------------------------------ consensus_8211#0 GTCTTCGAGGGCAACTGGTCCGTCCAGGAGGAGGTTGATGGTGGGGAAATATCAGCGGAT 660 consensus_8211#1 ------------------------------------------------------------ consensus_8211#0 CAGGAATTTCAGACTATACTTTCTTATGTGGTGGAACTGGAGCCGAAGCTCTGGGTTCCA 720 consensus_8211#1 ---------------ATACTTTCTTATGTGGTGGAACTGGAGCCGAAGCTCTGGGTTCCA 45 ********************************************* consensus_8211#0 GTGAGGCTACTGGAAGGGAGGATTTGTAATGAGATCAAGACCAACCTTTTTTCAATCAGA 780 consensus_8211#1 GTGAGGCTACTGGAAGGGAGGATTTGTAATGAGATCAAGACCAACCTTTTTTCAATCAGA 105 ************************************************************ consensus_8211#0 GAAGAAGCTCAGAGGATCCAGAGATTGCAAGATAAGAGAAATCCATGCTGAAGTTTGGCA 840 consensus_8211#1 GAAGAAGCTCAGAGGATCCAGAGATTGCAAGATAAG------------------------ 141 ************************************ consensus_8211#0 GTATGTTTTCAGTGATTGGTCATCTCTTAAGGCTTCATCCCAATATTACACGTCCTTGAT 900 consensus_8211#1 ------------TGATTGGTCATCTCTTAAGGCTTCATCCCAATATTACACGTCCTTGAT 189 ************************************************ consensus_8211#0 TCTCAAGAATACACTTCAGAAAGGGGGAAAATGGGCGAAGAAAGATGATGACGCGCTTCA 960 consensus_8211#1 TCTCAAGAATACACTTCAGAAAGGGGGAAAATGGGCGAAGAAAGATGATGACGCGCTTCA 249 ************************************************************ consensus_8211#0 TGATGTTAGTGGAACACCCAAAATTATGACTTAGGTCACTGGGCATGTCTTGTGACAATT 1020 consensus_8211#1 TGATGTTAGTGGAACACCCAAAATTATGACTTAGGTCACTGGGCATGTCTTGTGACAATT 309 ************************************************************ consensus_8211#0 GGATTGGTTGATCTTTCTCAATAGAAGAGAGGAAAAGGCAAATGGATTATTTGGAATTCG 1080 consensus_8211#1 GGATTGGTTGATCTTTCTCAATAGAAGAGAGGAAAAGGCAAATGGATTATTTGGAATTCG 369 ************************************************************ consensus_8211#0 GACAGCTTTGGACGTGCCTGACAGGCAAATGGATAGAGGGTCCCAAAACCTAATCTTGCT 1140 consensus_8211#1 GACAGCTTTGGACGTGCCTGACAGGCAAATGGATAGAGGGTCCCAAAACCTAATCTTGCT 429 ************************************************************ consensus_8211#0 TGTATATCTAGGATTACCTTTTTGCCACTCAATGGAGAAATGATTAACGTTTCGTGATTA 1200 consensus_8211#1 TGTATATCTAGGATTACCTTTTTGCCACTCAATGGAGAAATGATTAACGTTTCGTGATTA 489 ************************************************************ consensus_8211#0 ACTACACGATGTTGACATATATTGCAATTTTATTTGTAACCAATCCTAGGCAGAAAGCTG 1260 consensus_8211#1 ACTACACGATGTTGACATATATTGCAATTTTATTTGTAACCAATCCTAGGCAGAAAGCTG 549 ************************************************************ consensus_8211#0 CTGAATTGGTACTCACTTTAAAAAAAAAA---------- 1289 consensus_8211#1 CTGAATTGGTACTCACTTAAAAAAAAAAAAAAAAAAAAA 588 ****************** ********** |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||