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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8211#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 1289 fasta sequence
[AAAAAGAGCTTTGAGTTGACTGACATGGCCGTGCTCTCCTCTTCCTCCCATGGCCTCCTCCACCCACCGCTCCGTCTCCTCGCCGCCGCCTCCGCCAGTAGCGGCAGCAGCTACTCGATTCCCCATGCGCGCCTCCGCCTCGCCGTCACTACTCCGTCGAGGCTACCTTCCCCCATCTCATCCTCGCCCGACCCACCGCCCGACGTCGCCCACGACGAAGACGAACAGGAAGGTCAGCACCACAAGGAGGAGCGGGACGAGCGGTACGGGTTCGAGATCCAGGTGCGCAAGCTGCCCAAGCGCAACCGCCGCCTCGTCCGCGCCCGGGTCCGCGTCGACGCCCCGCTCGACGCCGTCTGGGCCACGCTCACCGACTACGAGGGCCTCGCCGGCTTCATCCCCGGCCTCTCCGAGTGCCGCCTCCTCGACCAGTCCGACTGCTTCGCCCGCCTCTACCAGGTGGGTGAGCAGGATCTCGCGCTGGGTTTCAAGTTCAACGCCAGGGGCACCATCGACTGCTACGAGGGCGAATTGCAGCTGCTGCCCGCCGGAGCGCGGAGGAGGGAGATCGCCTTCAACATGATCGACGGCGACTTCAAGGTCTTCGAGGGCAACTGGTCCGTCCAGGAGGAGGTTGATGGTGGGGAAATATCAGCGGATCAGGAATTTCAGACTATACTTTCTTATGTGGTGGAACTGGAGCCGAAGCTCTGGGTTCCAGTGAGGCTACTGGAAGGGAGGATTTGTAATGAGATCAAGACCAACCTTTTTTCAATCAGAGAAGAAGCTCAGAGGATCCAGAGATTGCAAGATAAGAGAAATCCAT-GCTGAAGTT-TGGCAGTATGTTT-TCAGTGATTGGTCATCTCTTAAGGCTTCATCCCAATATTACACGTCCTTGATTCTCAAGAATACA-CTTCAGAAAGGGGGAAAATGGGCGAAGAAAGATGATGACGCGCTTCATGATGTTAGTGGAACACCCAAAATTATGACTTAGGTCACTGGGCATGTCTTGTGACAATTGGATTGGTTGATCTTTCTCA-ATAGAAGAGAGGAAAAGGCAAATGGATTATTTGGAATTCGGACA-GCT-TTGGACGTGCCTGACAGGCAAATGGATAGAGGGTCCCAAAACCTAATCTTGCTTGTATATCTAGGA-TTACCTTTTTGCCA-CTCAATGGAGAAATGA-TTAACGTTTCGTGATTAACTACACGATGTTGACATATATTGCAATTTTATTTGTAACCAATCCTAGGCAGAAAGCTGCTGAATTGGTACTCACTTTAAAAAAAAAA]
[+] EMBL AK105975 [AAAAAGAGCTTTGAGTTGACTGACATGGCCGTGCTCTCCTCTTCCTCCCATGGCCTCCTCCACCCACCGCTCCGTCTCCTCGCCGCCGCCTCCGCCAGTAGCGGCAGCAGCTACTCGATTCCCCATGCGCGCCTCCGCCTCGCCGTCACTACTCCGTCGAGGCTACCTTCCCCCATCTCATCCTCGCCCGACCCACCGCCCGACGTCGCCCACGACGAAGACGAACAGGAAGGTCAGCACCACAAGGAGGAGCGGGACGAGCGGTACGGGTTCGAGATCCAGGTGCGCAAGCTGCCCAAGCGCAACCGCCGCCTCGTCCGCGCCCGGGTCCGCGTCGACGCCCCGCTCGACGCCGTCTGGGCCACGCTCACCGACTACGAGGGCCTCGCCGGCTTCATCCCCGGCCTCTCCGAGTGCCGCCTCCTCGACCAGTCCGACTGCTTCGCCCGCCTCTACCAGGTGGGTGAGCAGGATCTCGCGCTGGGTTTCAAGTTCAACGCCAGGGGCACCATCGACTGCTACGAGGGCGAATTGCAGCTGCTGCCCGCCGGAGCGCGGAGGAGGGAGATCGCCTTCAACATGATCGACGGCGACTTCAAGGTCTTCGAGGGCAACTGGTCCGTCCAGGAGGAGGTTGATGGTGGGGAAATATCAGCGGATCAGGAATTTCAGACTATACTTTCTTATGTGGTGGAACTGGAGCCGAAGCTCTGGGTTCCAGTGAGGCTACTGGAAGGGAGGATTTGTAATGAGATCAAGACCAACCTTTTTTCAATCAGAGAAGAAGCTCAGAGGATCCAGAGATTGCAAGATAAGAGAAATCCAT GCTGAAGTT TGGCAGTATGTTT TCAGTGATTGGTCATCTCTTAAGGCTTCATCCCAATATTACACGTCCTTGATTCTCAAGAATACA CTTCAGAAAGGGGGAAAATGGGCGAAGAAAGATGATGACGCGCTTCATGATGTTAGTGGAACACCCAAAATTATGACTTAGGTCACTGGGCATGTCTTGTGACAATTGGATTGGTTGATCTTTCTCA ATAGAAGAGAGGAAAAGGCAAATGGATTATTTGGAATTCGGACA GCT TTGGACGTGCCTGACAGGCAAATGGATAGAGGGTCCCAAAACCTAATCTTGCTTGTATATCTAGGA TTACCTTTTTGCCA CTCAATGGAGAAATGA TTAACGTTTCGTGATTAACTACACGATGTTGACATATATTGCAATTTTATTTGTAACCAATCCTAGGCAGAAAGCTGCTGAATTGGTAC ]
[+] EMBL AK059198 [ AAGAGCTTTGAGTTGACTGACATGGCCGTGCTCTCCTCTTCCTCCCATGGCCTCCTCCACCCACCGCTCCGTCTCCTCGCCGCCGCCTCCGCCAGTAGCGGCAGCAGCTACTCGATTCCCCATGCGCGCCTCCGCCTCGCCGTCACTACTCCGTCGAGGCTACCTTCCCCCATCTCATCCTCGCCCGACCCACCGCCCGACGTCGCCCACGACGAAGACGAACAGGAAGGTCAGCACCACAAGGAGGAGCGGGACGAGCGGTACGGGTTCGAGATCCAGGTGCGCAAGCTGCCCAAGCGCAACCGCCGCCTCGTCCGCGCCCGGGTCCGCGTCGACGCCCCGCTCGACGCCGTCTGGGCCACGCTCACCGACTACGAGGGCCTCGCCGGCTTCATCCCCGGCCTCTCCGAGTGCCGCCTCCTCGACCAGTCCGACTGCTTCGCCCGCCTCTACCAGGTGGGTGAGCAGGATCTCGCGCTGGGTTTCAAGTTCAACGCCAGGGGCACCATCGACTGCTACGAGGGCGAATTGCAGCTGCTGCCCGCCGGAGCGCGGAGGAGGGAGATCGCCTTCAACATGATCGACGGCGACTTCAAGGTCTTCGAGGGCAACTGGTCCGTCCAGGAGGAGGTTGATGGTGGGGAAATATCAGCGGATCAGGAATTTCAGACTATACTTTCTTATGTGGTGGAACTGGAGCCGAAGCTCTGGGTTCCAGTGAGGCTACTGGAAGGGAGGATTTGTAATGAGATCAAGACCAACCTTTTTTCAATCAGAGAAGAAGCTCAGAGGATCCAGAGATTGCAAGATAAGAGAAATCCAT GCTGAAGTT TGGCAGTATGTTT TCAGTGATTGGTCATCTCTTAAGGCTTCATCCCAATATTACACGTCCTTGATTCTCAAGAATACA CTTCAGAAAGGGGGAAAATGGGCGAAGAAAGATGATGACGCGCTTCATGATGTTAGTGGAACACCCAAAATTATGACTTAGGTCACTGGGCATGTCTTGTGACAATTGGATTGGTTGATCTTTCTCA ATAGAAGAGAGGAAAAGGCAAATGGATTATTTGGAATTCGGACA GCT TTGGACGTGCCTGACAGGCAAATGGATAGAGGGTCCCAAAACCTAATCTTGCTTGTATATCTAGGA TTACCTTTTTGCCA CTCAATGGAGAAATGA TTAACGTTTCGTGATTAACTACACGATGTTGACATATATTGCAATTTTATTTGTAACCAATCCTAGGCAGAAAGCTGCTGA ]
[+] EMBL BI813232 [ GAAGCTCAGAGTATCCAGAG TGCCAAGATAAGAGAAACCCATGGCTGAAGTTGTGCCAGTATGTTTCCCAGTGATTGGTCATCTCTTAAGGCTTCATCCCGATATTACACGTCCTTGATTCTCAAGAATACACCTTCAGAAAGGGGGAAAATGGGCGAAGAAAGATGATGACGCGCTTCATGAT TTAGTGGAACACCCAAAATTATGACTTAGGTCACT GGCATGTCTTGTGACAATTGGATTGGTTGATCTTTCTCA ATAGAAGAGAGGAAAA GCAAATGGATTATTTGGAATTCGGACA GCT TTGGACGTGCCTGACAGGCAAATGGATAGAGGGTCCCAAAACCTAATCTTGCTTGTATATCTAGGA TTACCTTTTTGCCA CTCAATGGAGAAATGA TTAACGTTTCGTGATTAACTACACGATGTTGACATAaagaaaaa ]
[+] EMBL BI806762 [ TTT TCAGTGATTGGTCATCTCTTAAGGCTTCATCCCCATATTACACGTCCTTGATTCTCAAGAATACA CTTCAGAAAGGGGGAAAATGGGCGAAGAAAGATGATGACGCGCTTCATGATGTTAGTGGAACACCCCAAATTATGACTTAGGTCACTGGGCATGTCTTGTGACAATTGGATTGGTTGATCTTTCTCACATAGAAGAGAGGAAAAGGCGAATGGATTATTTGGAATTCGGACACGCTCTTGGACGTGCCTGACAGGCAAATGGATAGAGGGTCCCCAAACCTAATCTTGCTTGTATATCTAGGAGTTACCTTTTTGCCACCCCCATGGAGAAATGACTTAACGTTTCGTGATTAACTACNCGATGTTGACATATATTGCNATTTTATTTGTAACCCATCCTAGGCAGAAAGCTGCTGAATTGGTACTCACTTTAAAAAAAAAA]
consensusID : consensus_8211#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 588 fasta sequence
[ATACTTTCTTATGTGGTGGAACTGGAGCCGAAGCTCTGGGTTCCAGTGAGGCTACTGGAAGGGAGGATTTGTAATGAGATCAAGACCAACCTTTTTTCAATCAGAGAAGAAGCTCAGAGGATCCAGAGATTGCAAGATAAGTGATTGGTCATCTCTTAAGGCTTCATCCCAATATTACACGTCCTTGATTCTCAAGAATACACTTCAGAAAGGGGGAAAATGGGCGAAGAAAGATGATGACGCGCTTCATGATGTTAGTGGAACACCCAAAATTATGACTTAGGTCACTGGGCATGTCTTGTGACAATTGGATTGGTTGATCTTTCTCAATAGAAGAGAGGAAAAGGCAAATGGATTATTTGGAATTCGGACAGCTTTGGACGTGCCTGACAGGCAAATGGATAGAGGGTCCCAAAACCTAATCTTGCTTGTATATCTAGGATTACCTTTTTGCCACTCAATGGAGAAATGATTAACGTTTCGTGATTAACTACACGATGTTGACATATATTGCAATTTTATTTGTAACCAATCCTAGGCAGAAAGCTGCTGAATTGGTACTCACTTAAAAAAAAAAAAAAAAAAAAA]
[+] EMBL CF306862 [ATACTTTCTTATGTGGTGGAACTGGAGCCGAAGCTCTGGGTTCCAGTGAGGCTACTGGAAGGGAGGATTTGTAATGAGATCAAGACCAACCTTTTTTCAATCAGAGAAGAAGCTCAGAGGATCCAGAGATTGCAAGATAAGTGATTGGTCATCTCTTAAGGCTTCATCCCAATATTACACGTCCTTGATTCTCAAGAATACACTTCAGAAAGGGGGAAAATGGGCGAAGAAAGATGATGACGCGCTTCATGATGTTAGTGGAACACCCAAAATTATGACTTAGGTCACTGGGCATGTCTTGTGACAATTGGATTGGTTGATCTTTCTCAATAGAAGAGAGGAAAAGGCAAATGGATTATTTGGAATTCGGACAGCTTTGGACGTGCCTGACAGGCAAATGGATAGAGGGTCCCAAAACCTAATCTTGCTTGTATATCTAGGATTACCTTTTTGCCACTCAATGGAGAAATGATTAACGTTTCGTGATTAACTACACGATGTTGACATATATTGCAATTTTATTTGTAACCAATCCTAGGCAGAAAGCTGCTGAATTGGTACTCACTTAAAAAAAAAAAAAAAAAAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_8211#0 AAAAAGAGCTTTGAGTTGACTGACATGGCCGTGCTCTCCTCTTCCTCCCATGGCCTCCTC 60
consensus_8211#1 ------------------------------------------------------------
consensus_8211#0 CACCCACCGCTCCGTCTCCTCGCCGCCGCCTCCGCCAGTAGCGGCAGCAGCTACTCGATT 120
consensus_8211#1 ------------------------------------------------------------
consensus_8211#0 CCCCATGCGCGCCTCCGCCTCGCCGTCACTACTCCGTCGAGGCTACCTTCCCCCATCTCA 180
consensus_8211#1 ------------------------------------------------------------
consensus_8211#0 TCCTCGCCCGACCCACCGCCCGACGTCGCCCACGACGAAGACGAACAGGAAGGTCAGCAC 240
consensus_8211#1 ------------------------------------------------------------
consensus_8211#0 CACAAGGAGGAGCGGGACGAGCGGTACGGGTTCGAGATCCAGGTGCGCAAGCTGCCCAAG 300
consensus_8211#1 ------------------------------------------------------------
consensus_8211#0 CGCAACCGCCGCCTCGTCCGCGCCCGGGTCCGCGTCGACGCCCCGCTCGACGCCGTCTGG 360
consensus_8211#1 ------------------------------------------------------------
consensus_8211#0 GCCACGCTCACCGACTACGAGGGCCTCGCCGGCTTCATCCCCGGCCTCTCCGAGTGCCGC 420
consensus_8211#1 ------------------------------------------------------------
consensus_8211#0 CTCCTCGACCAGTCCGACTGCTTCGCCCGCCTCTACCAGGTGGGTGAGCAGGATCTCGCG 480
consensus_8211#1 ------------------------------------------------------------
consensus_8211#0 CTGGGTTTCAAGTTCAACGCCAGGGGCACCATCGACTGCTACGAGGGCGAATTGCAGCTG 540
consensus_8211#1 ------------------------------------------------------------
consensus_8211#0 CTGCCCGCCGGAGCGCGGAGGAGGGAGATCGCCTTCAACATGATCGACGGCGACTTCAAG 600
consensus_8211#1 ------------------------------------------------------------
consensus_8211#0 GTCTTCGAGGGCAACTGGTCCGTCCAGGAGGAGGTTGATGGTGGGGAAATATCAGCGGAT 660
consensus_8211#1 ------------------------------------------------------------
consensus_8211#0 CAGGAATTTCAGACTATACTTTCTTATGTGGTGGAACTGGAGCCGAAGCTCTGGGTTCCA 720
consensus_8211#1 ---------------ATACTTTCTTATGTGGTGGAACTGGAGCCGAAGCTCTGGGTTCCA 45
*********************************************
consensus_8211#0 GTGAGGCTACTGGAAGGGAGGATTTGTAATGAGATCAAGACCAACCTTTTTTCAATCAGA 780
consensus_8211#1 GTGAGGCTACTGGAAGGGAGGATTTGTAATGAGATCAAGACCAACCTTTTTTCAATCAGA 105
************************************************************
consensus_8211#0 GAAGAAGCTCAGAGGATCCAGAGATTGCAAGATAAGAGAAATCCATGCTGAAGTTTGGCA 840
consensus_8211#1 GAAGAAGCTCAGAGGATCCAGAGATTGCAAGATAAG------------------------ 141
************************************
consensus_8211#0 GTATGTTTTCAGTGATTGGTCATCTCTTAAGGCTTCATCCCAATATTACACGTCCTTGAT 900
consensus_8211#1 ------------TGATTGGTCATCTCTTAAGGCTTCATCCCAATATTACACGTCCTTGAT 189
************************************************
consensus_8211#0 TCTCAAGAATACACTTCAGAAAGGGGGAAAATGGGCGAAGAAAGATGATGACGCGCTTCA 960
consensus_8211#1 TCTCAAGAATACACTTCAGAAAGGGGGAAAATGGGCGAAGAAAGATGATGACGCGCTTCA 249
************************************************************
consensus_8211#0 TGATGTTAGTGGAACACCCAAAATTATGACTTAGGTCACTGGGCATGTCTTGTGACAATT 1020
consensus_8211#1 TGATGTTAGTGGAACACCCAAAATTATGACTTAGGTCACTGGGCATGTCTTGTGACAATT 309
************************************************************
consensus_8211#0 GGATTGGTTGATCTTTCTCAATAGAAGAGAGGAAAAGGCAAATGGATTATTTGGAATTCG 1080
consensus_8211#1 GGATTGGTTGATCTTTCTCAATAGAAGAGAGGAAAAGGCAAATGGATTATTTGGAATTCG 369
************************************************************
consensus_8211#0 GACAGCTTTGGACGTGCCTGACAGGCAAATGGATAGAGGGTCCCAAAACCTAATCTTGCT 1140
consensus_8211#1 GACAGCTTTGGACGTGCCTGACAGGCAAATGGATAGAGGGTCCCAAAACCTAATCTTGCT 429
************************************************************
consensus_8211#0 TGTATATCTAGGATTACCTTTTTGCCACTCAATGGAGAAATGATTAACGTTTCGTGATTA 1200
consensus_8211#1 TGTATATCTAGGATTACCTTTTTGCCACTCAATGGAGAAATGATTAACGTTTCGTGATTA 489
************************************************************
consensus_8211#0 ACTACACGATGTTGACATATATTGCAATTTTATTTGTAACCAATCCTAGGCAGAAAGCTG 1260
consensus_8211#1 ACTACACGATGTTGACATATATTGCAATTTTATTTGTAACCAATCCTAGGCAGAAAGCTG 549
************************************************************
consensus_8211#0 CTGAATTGGTACTCACTTTAAAAAAAAAA---------- 1289
consensus_8211#1 CTGAATTGGTACTCACTTAAAAAAAAAAAAAAAAAAAAA 588
****************** **********
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||