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Oryza sativa
cluster # 8211 cluster # 8211       Sequences # 5       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_8211#0 length = 1289 sequences # 4  
consensus_8211#1 length = 588 sequences # 1  

consensusID : consensus_8211#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 1289
fasta sequence
                              [AAAAAGAGCTTTGAGTTGACTGACATGGCCGTGCTCTCCTCTTCCTCCCATGGCCTCCTCCACCCACCGCTCCGTCTCCTCGCCGCCGCCTCCGCCAGTAGCGGCAGCAGCTACTCGATTCCCCATGCGCGCCTCCGCCTCGCCGTCACTACTCCGTCGAGGCTACCTTCCCCCATCTCATCCTCGCCCGACCCACCGCCCGACGTCGCCCACGACGAAGACGAACAGGAAGGTCAGCACCACAAGGAGGAGCGGGACGAGCGGTACGGGTTCGAGATCCAGGTGCGCAAGCTGCCCAAGCGCAACCGCCGCCTCGTCCGCGCCCGGGTCCGCGTCGACGCCCCGCTCGACGCCGTCTGGGCCACGCTCACCGACTACGAGGGCCTCGCCGGCTTCATCCCCGGCCTCTCCGAGTGCCGCCTCCTCGACCAGTCCGACTGCTTCGCCCGCCTCTACCAGGTGGGTGAGCAGGATCTCGCGCTGGGTTTCAAGTTCAACGCCAGGGGCACCATCGACTGCTACGAGGGCGAATTGCAGCTGCTGCCCGCCGGAGCGCGGAGGAGGGAGATCGCCTTCAACATGATCGACGGCGACTTCAAGGTCTTCGAGGGCAACTGGTCCGTCCAGGAGGAGGTTGATGGTGGGGAAATATCAGCGGATCAGGAATTTCAGACTATACTTTCTTATGTGGTGGAACTGGAGCCGAAGCTCTGGGTTCCAGTGAGGCTACTGGAAGGGAGGATTTGTAATGAGATCAAGACCAACCTTTTTTCAATCAGAGAAGAAGCTCAGAGGATCCAGAGATTGCAAGATAAGAGAAATCCAT-GCTGAAGTT-TGGCAGTATGTTT-TCAGTGATTGGTCATCTCTTAAGGCTTCATCCCAATATTACACGTCCTTGATTCTCAAGAATACA-CTTCAGAAAGGGGGAAAATGGGCGAAGAAAGATGATGACGCGCTTCATGATGTTAGTGGAACACCCAAAATTATGACTTAGGTCACTGGGCATGTCTTGTGACAATTGGATTGGTTGATCTTTCTCA-ATAGAAGAGAGGAAAAGGCAAATGGATTATTTGGAATTCGGACA-GCT-TTGGACGTGCCTGACAGGCAAATGGATAGAGGGTCCCAAAACCTAATCTTGCTTGTATATCTAGGA-TTACCTTTTTGCCA-CTCAATGGAGAAATGA-TTAACGTTTCGTGATTAACTACACGATGTTGACATATATTGCAATTTTATTTGTAACCAATCCTAGGCAGAAAGCTGCTGAATTGGTACTCACTTTAAAAAAAAAA]

[+] EMBL AK105975             [AAAAAGAGCTTTGAGTTGACTGACATGGCCGTGCTCTCCTCTTCCTCCCATGGCCTCCTCCACCCACCGCTCCGTCTCCTCGCCGCCGCCTCCGCCAGTAGCGGCAGCAGCTACTCGATTCCCCATGCGCGCCTCCGCCTCGCCGTCACTACTCCGTCGAGGCTACCTTCCCCCATCTCATCCTCGCCCGACCCACCGCCCGACGTCGCCCACGACGAAGACGAACAGGAAGGTCAGCACCACAAGGAGGAGCGGGACGAGCGGTACGGGTTCGAGATCCAGGTGCGCAAGCTGCCCAAGCGCAACCGCCGCCTCGTCCGCGCCCGGGTCCGCGTCGACGCCCCGCTCGACGCCGTCTGGGCCACGCTCACCGACTACGAGGGCCTCGCCGGCTTCATCCCCGGCCTCTCCGAGTGCCGCCTCCTCGACCAGTCCGACTGCTTCGCCCGCCTCTACCAGGTGGGTGAGCAGGATCTCGCGCTGGGTTTCAAGTTCAACGCCAGGGGCACCATCGACTGCTACGAGGGCGAATTGCAGCTGCTGCCCGCCGGAGCGCGGAGGAGGGAGATCGCCTTCAACATGATCGACGGCGACTTCAAGGTCTTCGAGGGCAACTGGTCCGTCCAGGAGGAGGTTGATGGTGGGGAAATATCAGCGGATCAGGAATTTCAGACTATACTTTCTTATGTGGTGGAACTGGAGCCGAAGCTCTGGGTTCCAGTGAGGCTACTGGAAGGGAGGATTTGTAATGAGATCAAGACCAACCTTTTTTCAATCAGAGAAGAAGCTCAGAGGATCCAGAGATTGCAAGATAAGAGAAATCCAT GCTGAAGTT TGGCAGTATGTTT TCAGTGATTGGTCATCTCTTAAGGCTTCATCCCAATATTACACGTCCTTGATTCTCAAGAATACA CTTCAGAAAGGGGGAAAATGGGCGAAGAAAGATGATGACGCGCTTCATGATGTTAGTGGAACACCCAAAATTATGACTTAGGTCACTGGGCATGTCTTGTGACAATTGGATTGGTTGATCTTTCTCA ATAGAAGAGAGGAAAAGGCAAATGGATTATTTGGAATTCGGACA GCT TTGGACGTGCCTGACAGGCAAATGGATAGAGGGTCCCAAAACCTAATCTTGCTTGTATATCTAGGA TTACCTTTTTGCCA CTCAATGGAGAAATGA TTAACGTTTCGTGATTAACTACACGATGTTGACATATATTGCAATTTTATTTGTAACCAATCCTAGGCAGAAAGCTGCTGAATTGGTAC                 ]
[+] EMBL AK059198             [   AAGAGCTTTGAGTTGACTGACATGGCCGTGCTCTCCTCTTCCTCCCATGGCCTCCTCCACCCACCGCTCCGTCTCCTCGCCGCCGCCTCCGCCAGTAGCGGCAGCAGCTACTCGATTCCCCATGCGCGCCTCCGCCTCGCCGTCACTACTCCGTCGAGGCTACCTTCCCCCATCTCATCCTCGCCCGACCCACCGCCCGACGTCGCCCACGACGAAGACGAACAGGAAGGTCAGCACCACAAGGAGGAGCGGGACGAGCGGTACGGGTTCGAGATCCAGGTGCGCAAGCTGCCCAAGCGCAACCGCCGCCTCGTCCGCGCCCGGGTCCGCGTCGACGCCCCGCTCGACGCCGTCTGGGCCACGCTCACCGACTACGAGGGCCTCGCCGGCTTCATCCCCGGCCTCTCCGAGTGCCGCCTCCTCGACCAGTCCGACTGCTTCGCCCGCCTCTACCAGGTGGGTGAGCAGGATCTCGCGCTGGGTTTCAAGTTCAACGCCAGGGGCACCATCGACTGCTACGAGGGCGAATTGCAGCTGCTGCCCGCCGGAGCGCGGAGGAGGGAGATCGCCTTCAACATGATCGACGGCGACTTCAAGGTCTTCGAGGGCAACTGGTCCGTCCAGGAGGAGGTTGATGGTGGGGAAATATCAGCGGATCAGGAATTTCAGACTATACTTTCTTATGTGGTGGAACTGGAGCCGAAGCTCTGGGTTCCAGTGAGGCTACTGGAAGGGAGGATTTGTAATGAGATCAAGACCAACCTTTTTTCAATCAGAGAAGAAGCTCAGAGGATCCAGAGATTGCAAGATAAGAGAAATCCAT GCTGAAGTT TGGCAGTATGTTT TCAGTGATTGGTCATCTCTTAAGGCTTCATCCCAATATTACACGTCCTTGATTCTCAAGAATACA CTTCAGAAAGGGGGAAAATGGGCGAAGAAAGATGATGACGCGCTTCATGATGTTAGTGGAACACCCAAAATTATGACTTAGGTCACTGGGCATGTCTTGTGACAATTGGATTGGTTGATCTTTCTCA ATAGAAGAGAGGAAAAGGCAAATGGATTATTTGGAATTCGGACA GCT TTGGACGTGCCTGACAGGCAAATGGATAGAGGGTCCCAAAACCTAATCTTGCTTGTATATCTAGGA TTACCTTTTTGCCA CTCAATGGAGAAATGA TTAACGTTTCGTGATTAACTACACGATGTTGACATATATTGCAATTTTATTTGTAACCAATCCTAGGCAGAAAGCTGCTGA                         ]
[+] EMBL BI813232             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               GAAGCTCAGAGTATCCAGAG TGCCAAGATAAGAGAAACCCATGGCTGAAGTTGTGCCAGTATGTTTCCCAGTGATTGGTCATCTCTTAAGGCTTCATCCCGATATTACACGTCCTTGATTCTCAAGAATACACCTTCAGAAAGGGGGAAAATGGGCGAAGAAAGATGATGACGCGCTTCATGAT TTAGTGGAACACCCAAAATTATGACTTAGGTCACT GGCATGTCTTGTGACAATTGGATTGGTTGATCTTTCTCA ATAGAAGAGAGGAAAA GCAAATGGATTATTTGGAATTCGGACA GCT TTGGACGTGCCTGACAGGCAAATGGATAGAGGGTCCCAAAACCTAATCTTGCTTGTATATCTAGGA TTACCTTTTTGCCA CTCAATGGAGAAATGA TTAACGTTTCGTGATTAACTACACGATGTTGACATAaagaaaaa                                                              ]
[+] EMBL BI806762             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               TTT TCAGTGATTGGTCATCTCTTAAGGCTTCATCCCCATATTACACGTCCTTGATTCTCAAGAATACA CTTCAGAAAGGGGGAAAATGGGCGAAGAAAGATGATGACGCGCTTCATGATGTTAGTGGAACACCCCAAATTATGACTTAGGTCACTGGGCATGTCTTGTGACAATTGGATTGGTTGATCTTTCTCACATAGAAGAGAGGAAAAGGCGAATGGATTATTTGGAATTCGGACACGCTCTTGGACGTGCCTGACAGGCAAATGGATAGAGGGTCCCCAAACCTAATCTTGCTTGTATATCTAGGAGTTACCTTTTTGCCACCCCCATGGAGAAATGACTTAACGTTTCGTGATTAACTACNCGATGTTGACATATATTGCNATTTTATTTGTAACCCATCCTAGGCAGAAAGCTGCTGAATTGGTACTCACTTTAAAAAAAAAA]


>consensus_8211#0 AAAAAGAGCTTTGAGTTGACTGACATGGCCGTGCTCTCCTCTTCCTCCCATGGCCTCCTC CACCCACCGCTCCGTCTCCTCGCCGCCGCCTCCGCCAGTAGCGGCAGCAGCTACTCGATT CCCCATGCGCGCCTCCGCCTCGCCGTCACTACTCCGTCGAGGCTACCTTCCCCCATCTCA TCCTCGCCCGACCCACCGCCCGACGTCGCCCACGACGAAGACGAACAGGAAGGTCAGCAC CACAAGGAGGAGCGGGACGAGCGGTACGGGTTCGAGATCCAGGTGCGCAAGCTGCCCAAG CGCAACCGCCGCCTCGTCCGCGCCCGGGTCCGCGTCGACGCCCCGCTCGACGCCGTCTGG GCCACGCTCACCGACTACGAGGGCCTCGCCGGCTTCATCCCCGGCCTCTCCGAGTGCCGC CTCCTCGACCAGTCCGACTGCTTCGCCCGCCTCTACCAGGTGGGTGAGCAGGATCTCGCG CTGGGTTTCAAGTTCAACGCCAGGGGCACCATCGACTGCTACGAGGGCGAATTGCAGCTG CTGCCCGCCGGAGCGCGGAGGAGGGAGATCGCCTTCAACATGATCGACGGCGACTTCAAG GTCTTCGAGGGCAACTGGTCCGTCCAGGAGGAGGTTGATGGTGGGGAAATATCAGCGGAT CAGGAATTTCAGACTATACTTTCTTATGTGGTGGAACTGGAGCCGAAGCTCTGGGTTCCA GTGAGGCTACTGGAAGGGAGGATTTGTAATGAGATCAAGACCAACCTTTTTTCAATCAGA GAAGAAGCTCAGAGGATCCAGAGATTGCAAGATAAGAGAAATCCATGCTGAAGTTTGGCA GTATGTTTTCAGTGATTGGTCATCTCTTAAGGCTTCATCCCAATATTACACGTCCTTGAT TCTCAAGAATACACTTCAGAAAGGGGGAAAATGGGCGAAGAAAGATGATGACGCGCTTCA TGATGTTAGTGGAACACCCAAAATTATGACTTAGGTCACTGGGCATGTCTTGTGACAATT GGATTGGTTGATCTTTCTCAATAGAAGAGAGGAAAAGGCAAATGGATTATTTGGAATTCG GACAGCTTTGGACGTGCCTGACAGGCAAATGGATAGAGGGTCCCAAAACCTAATCTTGCT TGTATATCTAGGATTACCTTTTTGCCACTCAATGGAGAAATGATTAACGTTTCGTGATTA ACTACACGATGTTGACATATATTGCAATTTTATTTGTAACCAATCCTAGGCAGAAAGCTG CTGAATTGGTACTCACTTTAAAAAAAAAA



consensusID : consensus_8211#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 588
fasta sequence
                              [ATACTTTCTTATGTGGTGGAACTGGAGCCGAAGCTCTGGGTTCCAGTGAGGCTACTGGAAGGGAGGATTTGTAATGAGATCAAGACCAACCTTTTTTCAATCAGAGAAGAAGCTCAGAGGATCCAGAGATTGCAAGATAAGTGATTGGTCATCTCTTAAGGCTTCATCCCAATATTACACGTCCTTGATTCTCAAGAATACACTTCAGAAAGGGGGAAAATGGGCGAAGAAAGATGATGACGCGCTTCATGATGTTAGTGGAACACCCAAAATTATGACTTAGGTCACTGGGCATGTCTTGTGACAATTGGATTGGTTGATCTTTCTCAATAGAAGAGAGGAAAAGGCAAATGGATTATTTGGAATTCGGACAGCTTTGGACGTGCCTGACAGGCAAATGGATAGAGGGTCCCAAAACCTAATCTTGCTTGTATATCTAGGATTACCTTTTTGCCACTCAATGGAGAAATGATTAACGTTTCGTGATTAACTACACGATGTTGACATATATTGCAATTTTATTTGTAACCAATCCTAGGCAGAAAGCTGCTGAATTGGTACTCACTTAAAAAAAAAAAAAAAAAAAAA]

[+] EMBL CF306862             [ATACTTTCTTATGTGGTGGAACTGGAGCCGAAGCTCTGGGTTCCAGTGAGGCTACTGGAAGGGAGGATTTGTAATGAGATCAAGACCAACCTTTTTTCAATCAGAGAAGAAGCTCAGAGGATCCAGAGATTGCAAGATAAGTGATTGGTCATCTCTTAAGGCTTCATCCCAATATTACACGTCCTTGATTCTCAAGAATACACTTCAGAAAGGGGGAAAATGGGCGAAGAAAGATGATGACGCGCTTCATGATGTTAGTGGAACACCCAAAATTATGACTTAGGTCACTGGGCATGTCTTGTGACAATTGGATTGGTTGATCTTTCTCAATAGAAGAGAGGAAAAGGCAAATGGATTATTTGGAATTCGGACAGCTTTGGACGTGCCTGACAGGCAAATGGATAGAGGGTCCCAAAACCTAATCTTGCTTGTATATCTAGGATTACCTTTTTGCCACTCAATGGAGAAATGATTAACGTTTCGTGATTAACTACACGATGTTGACATATATTGCAATTTTATTTGTAACCAATCCTAGGCAGAAAGCTGCTGAATTGGTACTCACTTAAAAAAAAAAAAAAAAAAAAA]


>consensus_8211#1 ATACTTTCTTATGTGGTGGAACTGGAGCCGAAGCTCTGGGTTCCAGTGAGGCTACTGGAA GGGAGGATTTGTAATGAGATCAAGACCAACCTTTTTTCAATCAGAGAAGAAGCTCAGAGG ATCCAGAGATTGCAAGATAAGTGATTGGTCATCTCTTAAGGCTTCATCCCAATATTACAC GTCCTTGATTCTCAAGAATACACTTCAGAAAGGGGGAAAATGGGCGAAGAAAGATGATGA CGCGCTTCATGATGTTAGTGGAACACCCAAAATTATGACTTAGGTCACTGGGCATGTCTT GTGACAATTGGATTGGTTGATCTTTCTCAATAGAAGAGAGGAAAAGGCAAATGGATTATT TGGAATTCGGACAGCTTTGGACGTGCCTGACAGGCAAATGGATAGAGGGTCCCAAAACCT AATCTTGCTTGTATATCTAGGATTACCTTTTTGCCACTCAATGGAGAAATGATTAACGTT TCGTGATTAACTACACGATGTTGACATATATTGCAATTTTATTTGTAACCAATCCTAGGC AGAAAGCTGCTGAATTGGTACTCACTTAAAAAAAAAAAAAAAAAAAAA



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_8211#0      AAAAAGAGCTTTGAGTTGACTGACATGGCCGTGCTCTCCTCTTCCTCCCATGGCCTCCTC 60
consensus_8211#1      ------------------------------------------------------------
                                                                                  

consensus_8211#0      CACCCACCGCTCCGTCTCCTCGCCGCCGCCTCCGCCAGTAGCGGCAGCAGCTACTCGATT 120
consensus_8211#1      ------------------------------------------------------------
                                                                                  

consensus_8211#0      CCCCATGCGCGCCTCCGCCTCGCCGTCACTACTCCGTCGAGGCTACCTTCCCCCATCTCA 180
consensus_8211#1      ------------------------------------------------------------
                                                                                  

consensus_8211#0      TCCTCGCCCGACCCACCGCCCGACGTCGCCCACGACGAAGACGAACAGGAAGGTCAGCAC 240
consensus_8211#1      ------------------------------------------------------------
                                                                                  

consensus_8211#0      CACAAGGAGGAGCGGGACGAGCGGTACGGGTTCGAGATCCAGGTGCGCAAGCTGCCCAAG 300
consensus_8211#1      ------------------------------------------------------------
                                                                                  

consensus_8211#0      CGCAACCGCCGCCTCGTCCGCGCCCGGGTCCGCGTCGACGCCCCGCTCGACGCCGTCTGG 360
consensus_8211#1      ------------------------------------------------------------
                                                                                  

consensus_8211#0      GCCACGCTCACCGACTACGAGGGCCTCGCCGGCTTCATCCCCGGCCTCTCCGAGTGCCGC 420
consensus_8211#1      ------------------------------------------------------------
                                                                                  

consensus_8211#0      CTCCTCGACCAGTCCGACTGCTTCGCCCGCCTCTACCAGGTGGGTGAGCAGGATCTCGCG 480
consensus_8211#1      ------------------------------------------------------------
                                                                                  

consensus_8211#0      CTGGGTTTCAAGTTCAACGCCAGGGGCACCATCGACTGCTACGAGGGCGAATTGCAGCTG 540
consensus_8211#1      ------------------------------------------------------------
                                                                                  

consensus_8211#0      CTGCCCGCCGGAGCGCGGAGGAGGGAGATCGCCTTCAACATGATCGACGGCGACTTCAAG 600
consensus_8211#1      ------------------------------------------------------------
                                                                                  

consensus_8211#0      GTCTTCGAGGGCAACTGGTCCGTCCAGGAGGAGGTTGATGGTGGGGAAATATCAGCGGAT 660
consensus_8211#1      ------------------------------------------------------------
                                                                                  

consensus_8211#0      CAGGAATTTCAGACTATACTTTCTTATGTGGTGGAACTGGAGCCGAAGCTCTGGGTTCCA 720
consensus_8211#1      ---------------ATACTTTCTTATGTGGTGGAACTGGAGCCGAAGCTCTGGGTTCCA 45
                                     *********************************************

consensus_8211#0      GTGAGGCTACTGGAAGGGAGGATTTGTAATGAGATCAAGACCAACCTTTTTTCAATCAGA 780
consensus_8211#1      GTGAGGCTACTGGAAGGGAGGATTTGTAATGAGATCAAGACCAACCTTTTTTCAATCAGA 105
                      ************************************************************

consensus_8211#0      GAAGAAGCTCAGAGGATCCAGAGATTGCAAGATAAGAGAAATCCATGCTGAAGTTTGGCA 840
consensus_8211#1      GAAGAAGCTCAGAGGATCCAGAGATTGCAAGATAAG------------------------ 141
                      ************************************                        

consensus_8211#0      GTATGTTTTCAGTGATTGGTCATCTCTTAAGGCTTCATCCCAATATTACACGTCCTTGAT 900
consensus_8211#1      ------------TGATTGGTCATCTCTTAAGGCTTCATCCCAATATTACACGTCCTTGAT 189
                                  ************************************************

consensus_8211#0      TCTCAAGAATACACTTCAGAAAGGGGGAAAATGGGCGAAGAAAGATGATGACGCGCTTCA 960
consensus_8211#1      TCTCAAGAATACACTTCAGAAAGGGGGAAAATGGGCGAAGAAAGATGATGACGCGCTTCA 249
                      ************************************************************

consensus_8211#0      TGATGTTAGTGGAACACCCAAAATTATGACTTAGGTCACTGGGCATGTCTTGTGACAATT 1020
consensus_8211#1      TGATGTTAGTGGAACACCCAAAATTATGACTTAGGTCACTGGGCATGTCTTGTGACAATT 309
                      ************************************************************

consensus_8211#0      GGATTGGTTGATCTTTCTCAATAGAAGAGAGGAAAAGGCAAATGGATTATTTGGAATTCG 1080
consensus_8211#1      GGATTGGTTGATCTTTCTCAATAGAAGAGAGGAAAAGGCAAATGGATTATTTGGAATTCG 369
                      ************************************************************

consensus_8211#0      GACAGCTTTGGACGTGCCTGACAGGCAAATGGATAGAGGGTCCCAAAACCTAATCTTGCT 1140
consensus_8211#1      GACAGCTTTGGACGTGCCTGACAGGCAAATGGATAGAGGGTCCCAAAACCTAATCTTGCT 429
                      ************************************************************

consensus_8211#0      TGTATATCTAGGATTACCTTTTTGCCACTCAATGGAGAAATGATTAACGTTTCGTGATTA 1200
consensus_8211#1      TGTATATCTAGGATTACCTTTTTGCCACTCAATGGAGAAATGATTAACGTTTCGTGATTA 489
                      ************************************************************

consensus_8211#0      ACTACACGATGTTGACATATATTGCAATTTTATTTGTAACCAATCCTAGGCAGAAAGCTG 1260
consensus_8211#1      ACTACACGATGTTGACATATATTGCAATTTTATTTGTAACCAATCCTAGGCAGAAAGCTG 549
                      ************************************************************

consensus_8211#0      CTGAATTGGTACTCACTTTAAAAAAAAAA---------- 1289
consensus_8211#1      CTGAATTGGTACTCACTTAAAAAAAAAAAAAAAAAAAAA 588
                      ****************** **********          




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)