These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8221#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 623 fasta sequence [AGGTCAAGCTCCTCAGCCCAAGGACACGGTCCTCCTCGGCCAGTCTCCGCCTCATCACCTCCCCAAGAGTGACGAGCGCTCGGCGAGGAAGAACGAGAAGATCGCGTCGAGCCATCAGCACAGCACGAGCAGCTCCGCGAGCGACCCGCTCCCGGCGTACCGAGGAGGAGGAGGAGGAGGAGAGCGCCTCCGACGATCAGGACGGGAAGAGGGACCGGCACCGGAGCTCCGGCCCGGCGCGCCGCCGGCCCACGGCGGCAGAGGCCAGGCACTGGCGGCCGTCGCTGCAGAGCATCTCCGAGGCCGCGAGCCAGAGCGGCGGCGGCGGCGGCGGCAGCAGCATCTCTGAATCCGCCGCACAGATGATTCCCCTGTTTGGTGCTGTATTGTCTGGTTTTCTTTTC-TTTTTTTTCTTTCTTCTTCTTTTCTTTTTTTTCTTTTCTCTCTTAGTATAAAGTGCTTGGAAGTTGGAACTACCTCCAAAAGAAAGCAGAAAAAATTGTAAATCAGAGTAATCAGAGCAGGATCAATAGGAAGGAAAGCTTGTTTCATCTCTCATGTAATTTGCATGGTGAAAAACTGAAACTTCAGTGTGCAAAAAAAAAAAAAAAAAAAAAANAAAN] [+] EMBL BI813757 [AGGTCAAGCTCCTCAGCCCAAGGACACGGTCCTCCTCGGCCAGTCTCCGCCTCATCACCTCCCCAAGAGTGACGAGCGCTCGGCGAGGAAGAACGAGAAGATCGCGTCGAGCCATCAGCACAGCACGAGCAGCTCCGCGAGCGACCCGCTCCCGGCGTACCGAGGAGGAGGAGGAGGAGGAGAGCGCCTCCGACGATCAGGACGGGAAGAGGGACCGGCACCGGAGCTCCGGCCCGGCGCGCCGCCGGCCCACGGCGGCAGAGGCCAGGCACTGGCGGCCGTCGCTGCAGAGCATCTCCGAGGCCGCGAGCCAGAGCGGCGGCGGCGGCGGCGGCAGCAGCATCTCTGAATCCGCCGCACAGATGATTCCCCTGTTTGGTGCTGTATTGTCTGGTTTTCTTTTC TTTTTTTT ] [+] EMBL AU091422 [ GCC GGCACTGGCGGCCNTCGCTGCAGAGCATCTCCGAGGCCGCGAGCCAGAGCGGCGGCGGCGGCGGCNGCAGCAGCATCTCTGAATCCGCCGCA AGATGATTCCCCTGTTTGGTGCTGTATTGTCTGGTTTTCTTTTC TTTTTTTTCTTTCTTCTTCTTTTCTTTTTTTTCTTTTCTCTCTTAGTATAAAGTGCTTGGAAGTTGGAACTACCTCCAAAAGAAAGCAGAAAAAATTGTAAATCAGAGTAATCAGAGCAGGATCAATAGGAAGGAAAGCTTGTTTCATCTCTCATGTAATTTGCATGGTGAAAAACTGAAACTTCAGTGTGCAAAAAAAAAAAAAAAAAAAAAANAAAN] [+] EMBL AU083543 [ GATGATTCCCCTGTTTGGTGCTGTATTGTCTGGTTTTCTTTTCTTTTTTTTTCTTTCTTCTTCTTTTCTTTTTTTTCTTTTCTCTCTTAGTATAAAGTGCTTGGAAGTTGGAACTNCCTCCAAAAGAAAGCAGAAAAAATTGTAAATCAGAGTAATCAGAGCAGGATCAATAGGAAGGAANGCTTGTTTCAaaaaaaaa ] [+] EMBL AK107716 [ AGTGCTTGGAAGTTGGAACTACCTCCAAAAGAAAGCAGAAAAAATTGTAAATCAGAGTAATCAGAGCAGGATCAATAGGAAGGAAAGCTTGT ] consensusID : consensus_8221#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 612 fasta sequence [CTGGGCCAGGTTTCCCGCCTCTTCCCCTCCCAAAAGGGGACGAAGGCCCTCCGGCCGAGGAAGAACGAGAAGATCTGGCGGTGCGAGGTCCTCAGGCAGCAGCCCGAGCAGTTCCGGCGAGGCGACCCGCTTCCCGGGGTAACCCAGGAGGAGGAGGAGGAGGAAAGCGCCTCCGACGATCAGGACGGGAAGAGGGACCGGCCCCGGAGCTTCGGGGCCGGCGCGCCCCCGGCCGCCGGCGGCAGAGGCCGGCACTGGCGGCCGTCGCTGCAGAGCATTTCCGAGGCCCCGAACCAAAACGGCGGCGGCGGCGGCGGCAACAACATTTTTGAATCCCCCGCAAGATGATTCCCCTGTTTGGTGCTGTATTGTCTGGGTTTCCTTTCCTTTTTTTTTCCTTCTTCTTCTTTTCCTTTTTTTTTCTTTTCTCTCTTAGTATAAAGTGCTTGGAAGTTGGAACTACCTCCAAAAGAAAGCAGAAAAAATTGTTAATCAGAGTAATCAGAGCAGGATCAATAGGAAGGAAAGCTTGTTTCATCTCTCATGTAATTTGCATGGTGAAAAACTGAAACTTCAGTGTGCAATTGGGGTTCAGTGAAAAAAAAAAAAAAA] [-] EMBL CA757100 [CTGGGCCAGGTTTCCCGCCTCTTCCCCTCCCAAAAGGGGACGAAGGCCCTCCGGCCGAGGAAGAACGAGAAGATCTGGCGGTGCGAGGTCCTCAGGCAGCAGCCCGAGCAGTTCCGGCGAGGCGACCCGCTTCCCGGGGTAACCCAGGAGGAGGAGGAGGAGGAAAGCGCCTCCGACGATCAGGACGGGAAGAGGGACCGGCCCCGGAGCTTCGGGGCCGGCGCGCCCCCGGCCGCCGGCGGCAGAGGCCGGCACTGGCGGCCGTCGCTGCAGAGCATTTCCGAGGCCCCGAACCAAAACGGCGGCGGCGGCGGCGGCAACAACATTTTTGAATCCCCCGCAAGATGATTCCCCTGTTTGGTGCTGTATTGTCTGGGTTTCCTTTCCTTTTTTTTTCCTTCTTCTTCTTTTCCTTTTTTTTTCTTTTCTCTCTTAGTATAAAGTGCTTGGAAGTTGGAACTACCTCCAAAAGAAAGCAGAAAAAATTGTTAATCAGAGTAATCAGAGCAGGATCAATAGGAAGGAAAGCTTGTTTCATCTCTCATGTAATTTGCATGGTGAAAAACTGAAACTTCAGTGTGCAATTGGGGTTCAGTGAAAAAAAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_8221#0 AGGTCAAGCTCCTCAGCCCAAGGACACGGTCCTCCTCGGCCAG--TCTCCGCCTCATCAC 58 consensus_8221#1 ----------------------------------CTGGGCCAGGTTTCCCGCCTCTTCCC 26 ** ****** * ******* ** * consensus_8221#0 CTCCCCAAGAGTGACGAGCGCTC----GGCGAGGAAGAACGAGAAGATC-----GCGTCG 109 consensus_8221#1 CTCCCAAAAGGGGACGAAGGCCCTCCGGCCGAGGAAGAACGAGAAGATCTGGCGGTGCGA 86 ***** ** * ***** ** * * ******************** * * consensus_8221#0 AGCCATCAGC--ACAGCACGAGCAGCTCCG-CGAG-CGACCCGCT-CCCGGCGTA-CCGA 163 consensus_8221#1 GGTCCTCAGGCAGCAGCCCGAGCAGTTCCGGCGAGGCGACCCGCTTCCCGGGGTAACCCA 146 * * **** **** ******* **** **** ********* ***** *** ** * consensus_8221#0 GGAGGAGGAGGAGGAGGAGAGCGCCTCCGACGATCAGGACGGGAAGAGGGACCGGCACCG 223 consensus_8221#1 GGAGGAGGAGGAGGAGGAAAGCGCCTCCGACGATCAGGACGGGAAGAGGGACCGGCCCCG 206 ****************** ************************************* *** consensus_8221#0 GAGCTCCGGC-CCGGCGCGCCGCCGGCCCACGGCGGCAGAGGCCAGGCACTGGCGGCCGT 282 consensus_8221#1 GAGCTTCGGGGCCGGCGCGCCCCCGGCCGCCGGCGGCAGAGGCC-GGCACTGGCGGCCGT 265 ***** *** ********** ****** ************** *************** consensus_8221#0 CGCTGCAGAGCATCTCCGAGGCCGCGAGCCAGAGCGGCGGCGGCGGCGGCGGCAGCAGCA 342 consensus_8221#1 CGCTGCAGAGCATTTCCGAGGCCCCGAACCAAAACGGCGGCGGCGGCGGCGGCAACAACA 325 ************* ********* *** *** * ******************** ** ** consensus_8221#0 TCTCTGAATCCGCCGCACAGATGATTCCCCTGTTTGGTGCTGTATTGTCTGGTTTTCTTT 402 consensus_8221#1 TTTTTGAATCCCCCGCA-AGATGATTCCCCTGTTTGGTGCTGTATTGTCTGGGTTTCCTT 384 * * ******* ***** ********************************** **** ** consensus_8221#0 TC--TTTTTTTTCTTTCTTCTTCTTTTC--TTTTTTTTCTTTTCTCTCTTAGTATAAAGT 458 consensus_8221#1 TCCTTTTTTTTTCCTTCTTCTTCTTTTCCTTTTTTTTTCTTTTCTCTCTTAGTATAAAGT 444 ** ********* ************** ****************************** consensus_8221#0 GCTTGGAAGTTGGAACTACCTCCAAAAGAAAGCAGAAAAAATTGTAAATCAGAGTAATCA 518 consensus_8221#1 GCTTGGAAGTTGGAACTACCTCCAAAAGAAAGCAGAAAAAATTGTTAATCAGAGTAATCA 504 ********************************************* ************** consensus_8221#0 GAGCAGGATCAATAGGAAGGAAAGCTTGTTTCATCTCTCATGTAATTTGCATGGTGAAAA 578 consensus_8221#1 GAGCAGGATCAATAGGAAGGAAAGCTTGTTTCATCTCTCATGTAATTTGCATGGTGAAAA 564 ************************************************************ consensus_8221#0 ACTGAAACTTCAGTGTGCAAAAAAAA---AAAAAAAAAAAAAANAAAN 623 consensus_8221#1 ACTGAAACTTCAGTGTGCAATTGGGGTTCAGTGAAAAAAAAAAAAAAA 612 ******************** * ********** *** |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||