These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8222#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 593 fasta sequence [GTCGACGAGCGAAGAGAACAGAAGCGAGCGAGCAAGGAAGGCGATCCAAGGAAGAAGATGGCGGCGGCGGCGGCCATGGCGATGAAAGATCCGAGCCTGTGGCACAAGGTGGCCGCCATATCCGGGGTTGCTGCCCTTGGACTTGGCACCTATGGCGCGCACATGTTCCGCCCCAAGAACCCCGCGTACAAGGAGGTTTGGCACACTGCGTCCCTCTACCATCTCGTCCACACCGCGGCGTTGCTCGGGGCTCCCATCACCAAGCGCCCCGATGTTTTTGGAGGGCTTCTTACTGCTGGGATTGTTCTCTTCTCTGGAACGTGCTACACTGTGGCTTATCTTGAAGACAGGAAGTATTCTTCCACGGCACCGTTGGGTGGCTTTGCGTTCATCGCTGCTTGGGCCAGTCTGCTCTTCTGATTATATCGTGTTTTAGCATGTGAAAACGTATTACATTACTGAATGCTTTGTATTTGGTGCCCTATCAGTTCATGCAATTGACTCGTATGCATCTCTATCATGACCTTCTAGAAAAGAAATGAAATAAAATCAAAAGTACCTTGATGGTTGCACTTTAAAAAAAAAAAAAAAAA] [+] EMBL CF278931 [GTCGACGAGCGAAGAGAACAGAAGCGAGCGAGCAAGGAAGGCGATCCAAGGAAGAAGATGGCGGCGGCGGCGGCCATGGCGATGAAAGATCCGAGCCTGTGGCACAAGGTGGCCGCCATATCCGGGGTTGCTGCCCTTGGACTTGGCGCCTATGGCGCGCACATGTTCCGCCCCAAGAACCCCGCGTACAAGGAGGTTTGGCACACTGCGTCCCTCTACCATCTCGTCCACACCGCGGCGTTGCTCGGGGCTCCCATCACCAGGCGCCCCGATGTTTTTGGAGGGCTTCTTACTGCTGGGATTGTTCTCTTCTCTGGAACGTGCTACACTGTGGCTTATCTTGAAGACAGGAAGTATTCTTCCACGGCACCGTTGGGTGGCTTTGCGTTCATCGCTGCTTGGGCCAGTCTGCTCTTCTGATTATATCGTGTTTTAGCATGTGAAAACGTATTACATTACTGAATGCTTTGTATTTGGTGCCCTATCAGTTCATGCAATTGACTCGTATGCATCTCTATCATGACCTTCTAGAAAAGAAATGAAATA ] [+] EMBL CB681310 [ ACGAGCGAAGAGAACAGAAGCGAGCGAGCAAGGAAGGCGATCCAAGGAAGAAGATGGCGGCGGCGGCGGCCATGGCGATGAAAGATCCGAGCCTGTGGCACAAGGTGGCCGCCATATCCGGGGTTGCTGCCCTTGGACTTGGCACCTATGGCGCGCACATGTTCCGCCCCAAGAACCCCGCGTACGAGGAGGTTTGGCACACTGCGTCCCTCTACCATCTCGTCCACACCGCGGCGTTGCTCGGGGCTCCCATCACCAAGCGCCCCGATGTTTTTGGAGGGCTTCTTACTGCTGGGATTGTTCTCTTCTCTGGAACGTGCTACACTGTGGCTTATCTTGAAGACAGGAAGTATTCTTCCACGGCACCGTTGGGTGGCTTTGCGTTCATCGCTGCTTGGGCCAGTCTGCTCTTCTGATTATATCGTGTTTTATCATGTGAAAACGTATTACATTACTGAATGCTTTGTATTTGGTGCCCTATCAGTTCATGCAATTGACTCGTATGCATCTCTATCATGACCTTCTAGAAAAGAAATGAAATAAAATCAAAAGTACCTT ] [+] EMBL AK062777 [ GAGCGAAGAGAACAGAAGCGAGCGAGCAAGGAAGGCGATCCAAGGAAGAAGATGGCGGCGGCGGCGGCCATGGCGATGAAAGATCCGAGCCTGTGGCACAAGGTGGCCGCCATATCCGGGGTTGCTGCCCTTGGACTTGGCACCTATGGCGCGCACATGTTCCGCCCCAAGAACCCCGCGTACAAGGAGGTTTGGCACACTGCGTCCCTCTACCATCTCGTCCACACCGCGGCGTTGCTCGGGGCTCCCATCACCAAGCGCCCCGATGTTTTTGGAGGGCTTCTTACTGCTGGGATTGTTCTCTTCTCTGGAACGTGCTACACTGTGGCTTATCTTGAAGACAGGAAGTATTCTTCCACGGCACCGTTGGGTGGCTTTGCGTTCATCGCTGCTTGGGCCAGTCTGCTCTTCTGATTATATCGTGTTTTAGCATGTGAAAACGTATTACATTACTGAATGCTTTGTATTTGGTGCCCTATCAGTTCATGCAATTGACTCGTATGCATCTCTATCATGACCTTCTAGAAAAGAAATGAAATAAAATCAAAAGTACCT ] [+] EMBL CA755094 [ AAGGAAGGCGATCCAAGGAAGAAGATGGCGGCGGCGGCGGCCATGGCGATGAAAGATCCGAGCCTGTGGCACAAGGTGGCCGCCATATCCGGGGTTGCTGCCCTTGGACTTGGCACCTATGGCGCGCACATGTTCCGCCCCAAGAACCCCGCGTACAAGGAGGTTTGGCACACTGCGTCCCTCTACCATCTCGTCCACACCGCGGCGTTGCTCGGGGCTCCCATCACCAAGCGCCCCGATGTTTTTGGAGGGCTTCTTACTGCTGGGATTGTTCTCTTCTCTGGAACGTGCTACACTGTGGCTTATCTTGAAGACAGGAAGTATTCTTCCACGGCACCGTTGGGTGGCTTTGCGTTCATCGCTGCTTGGGCCAGTCTGCTCTTCTGATTATATCGTGTTTTAGCATGTGAAAACGTATTACATTACTGAATGCTTTGTATTTGGTGCCCTATCAGTTCATGCAATTGACTCGTATGCATCTCTATCATGACCTTCTAGAANAGAAATGAAATAAAATCAAAAGTACCTTGATGGTTGCACTTTAAAAAAAAAAAAAAAAA] consensusID : consensus_8222#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 288 fasta sequence [GCCGCTAACGTGCTACACTGTGGCTTATCTTGAAGACAGGAAGTATTCTTCCACGGCACCGTTGGGTGGCTTTGCGTTCATCGCTGCTTGGGCCAGTCTGCTCTTCTGATTATATCGTGTTTTAGCATGTGAAAACGTATTACATTACTGAATGCTTTGTATTTGGTGCCCTATCAGTTCATGCAATTGACTCGTATGCATCTCTATCATGACCTTCTAGAAAAGAAATGAAATAAAATCAAAAGTACCTTGATGGTTGAGCGGCCGCGAATTCGCGGCCGCTAGCGG] [+] EMBL AU225576 [GCCGCTAACGTGCTACACTGTGGCTTATCTTGAAGACAGGAAGTATTCTTCCACGGCACCGTTGGGTGGCTTTGCGTTCATCGCTGCTTGGGCCAGTCTGCTCTTCTGATTATATCGTGTTTTAGCATGTGAAAACGTATTACATTACTGAATGCTTTGTATTTGGTGCCCTATCAGTTCATGCAATTGACTCGTATGCATCTCTATCATGACCTTCTAGAAAAGAAATGAAATAAAATCAAAAGTACCTTGATGGTTGAGCGGCCGCGAATTCGCGGCCGCTAGCGG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_8222#0 GTCGACGAGCGAAGAGAACAGAAGCGAGCGAGCAAGGAAGGCGATCCAAGGAAGAAGATG 60 consensus_8222#1 ------------------------------------------------------------ consensus_8222#0 GCGGCGGCGGCGGCCATGGCGATGAAAGATCCGAGCCTGTGGCACAAGGTGGCCGCCATA 120 consensus_8222#1 ------------------------------------------------------------ consensus_8222#0 TCCGGGGTTGCTGCCCTTGGACTTGGCACCTATGGCGCGCACATGTTCCGCCCCAAGAAC 180 consensus_8222#1 ------------------------------------------------------------ consensus_8222#0 CCCGCGTACAAGGAGGTTTGGCACACTGCGTCCCTCTACCATCTCGTCCACACCGCGGCG 240 consensus_8222#1 ------------------------------------------------------------ consensus_8222#0 TTGCTCGGGGCTCCCATCACCAAGCGCCCCGATGTTTTTGGAGGGCTTCTTACTGCTGGG 300 consensus_8222#1 ------------------------------------------------------------ consensus_8222#0 ATTGTTCTCTTCTCTGGAACGTGCTACACTGTGGCTTATCTTGAAGACAGGAAGTATTCT 360 consensus_8222#1 -----------GCCGCTAACGTGCTACACTGTGGCTTATCTTGAAGACAGGAAGTATTCT 49 * ******************************************* consensus_8222#0 TCCACGGCACCGTTGGGTGGCTTTGCGTTCATCGCTGCTTGGGCCAGTCTGCTCTTCTGA 420 consensus_8222#1 TCCACGGCACCGTTGGGTGGCTTTGCGTTCATCGCTGCTTGGGCCAGTCTGCTCTTCTGA 109 ************************************************************ consensus_8222#0 TTATATCGTGTTTTAGCATGTGAAAACGTATTACATTACTGAATGCTTTGTATTTGGTGC 480 consensus_8222#1 TTATATCGTGTTTTAGCATGTGAAAACGTATTACATTACTGAATGCTTTGTATTTGGTGC 169 ************************************************************ consensus_8222#0 CCTATCAGTTCATGCAATTGACTCGTATGCATCTCTATCATGACCTTCTAGAAAAGAAAT 540 consensus_8222#1 CCTATCAGTTCATGCAATTGACTCGTATGCATCTCTATCATGACCTTCTAGAAAAGAAAT 229 ************************************************************ consensus_8222#0 GAAATAAAATCAAAAGTACCTTGATGGTTGCACTTTAAAAAAAAAAAAAAAAA------ 593 consensus_8222#1 GAAATAAAATCAAAAGTACCTTGATGGTTGAGCGGCCGCGAATTCGCGGCCGCTAGCGG 288 ****************************** * ** |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||