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Oryza sativa
cluster # 8223 cluster # 8223       Sequences # 5       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_8223#0 length = 1189 sequences # 4  
consensus_8223#1 length = 633 sequences # 1  

consensusID : consensus_8223#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 1189
fasta sequence
                              [CCCCTCGCCTCGCATCCCACGCCTTCCCCCCCCCCATTCGTCGCCTCCTGTCCCGGGGGCCGCGAGCAAAACCCCCACCCCCAAATCGCAGCCTCGCTCAGCTCGATCTCTCTCTCGTCTCGCCATGGCCCCCAGCGACGACCTCGTCTACATGGCCAAGCTCGCCGAGCAGGCCGAGCGATACGACGAGATGGTGGAGGCAATGAATAGTGTGGCAAAGTTAGACGAGGGGCTGACAAAGGAGGAGAGGAACCTCCTCTCAGTTGGCTACAAGAATTTGATTGGTGCAAAGCGTGCGGCAATGCGTATCATTGGATCCATTGAGCTAAAGGAGGAGACAAAGGGCAAGGAGAGTCATGTAAGGCAGACTGCTGAGTATCGTCGCAAGGTGGAGGCTGAGATGGATAAAATCTGCTGTGATGTCATAAACATTATTGACAAGTACCTTATCCCACATTCCTCTGGAGCTGAGAGCTCAGTCTTCTACTACAAAATGAAGGGAGATTACTACCGGTACCTTGCAGAGTTCAAGACTGGGACTGAGAAGATTGAAGTGTCTGAACTGTCACTCAATGCTTATGAGACTG-CTTCCAAAACTGCGCAGACAGATCTCACT-CCAACTGA-CCCTATCAGACTTGGTTTAGCTCTGAATATATCTGTCTTCTACTGTGAGATCATGAACTCACCTGACAAAGCTTGCCAACTTGCTAAGAACGCCTTTGATGAAGCTGTTGCGGAGCTTCCCTCCCTCAGTGAGGAGAATTACAAAGATAGTACACTGATCATGCAACTTCTGAGGGATAATCTAGCACTGTGGAATTCTGATATGGCTGATGATGCAGACGATATTAGGGAACGAACAGATACAACTGGTGCTAAAGGTGACCCTGCAGCGTGATGGAGGTGCTAATAGCTGGTAGAGTCGAAGCATAACAACAACAACAACAAGGGTGTGGTGGGGTGCGGAAGGACTACCATTTACTCACTGTTAGTGTTAGGTTCTGTAGTGTA-GGAGTTGAGCTGCTGAGTAACCCTCGCTTGTAGTCT-GGGCCTGATTCTTCGACTTCTTGAGCAACATCGTGTACTAAGCACTCGCTGATCGCTCTTTTGCAAGCATTGTTTTTTTTTGGGTTACTCTTGATGATGATTAGGCAAAAGTTATCTGGTTCATCAAAAAAAAAAAAAAAAA]

[+] EMBL AK103145             [CCCCTCGCCTCGCATCCCACGCCTTCCCCCCCCCCATTCGTCGCCTCCTGTCCCGGGGGCCGCGAGCAAAACCCCCACCCCCAAATCGCAGCCTCGCTCAGCTCGATCTCTCTCTCGTCTCGCCATGGCCCCCAGCGACGACCTCGTCTACATGGCCAAGCTCGCCGAGCAGGCCGAGCGATACGACGAGATGGTGGAGGCAATGAATAGTGTGGCAAAGTTAGACGAGGGGCTGACAAAGGAGGAGAGGAACCTCCTCTCAGTTGGCTACAAGAATTTGATTGGTGCAAAGCGTGCGGCAATGCGTATCATTGGATCCATTGAGCTAAAGGAGGAGACAAAGGGCAAGGAGAGTCATGTAAGGCAGACTGCTGAGTATCGTCGCAAGGTGGAGGCTGAGATGGATAAAATCTGCTGTGATGTCATAAACATTATTGACAAGTACCTTATCCCACATTCCTCTGGAGCTGAGAGCTCAGTCTTCTACTACAAAATGAAGGGAGATTACTACCGGTACCTTGCAGAGTTCAAGACTGGGACTGAGAAGATTGAAGTGTCTGAACTGTCACTCAATGCTTATGAGACTG CTTCCAAAACTGCGCAGACAGATCTCACT CCAACTGA CCCTATCAGACTTGGTTTAGCTCTGAATATATCTGTCTTCTACTGTGAGATCATGAACTCACCTGACAAAGCTTGCCAACTTGCTAAGAACGCCTTTGATGAAGCTGTTGCGGAGCTTCCCTCCCTCAGTGAGGAGAATTACAAAGATAGTACACTGATCATGCAACTTCTGAGGGATAATCTAGCACTGTGGAATTCTGATATGGCTGATGATGCAGACGATATTAGGGAACGAACAGATACAACTGGTGCTAAAGGTGACCCTGCAGCGTGATGGAGGTGCTAATAGCTGGTAGAGTCGAAGCATAACAACAACAACAACAAGGGTGTGGTGGGGTGCGGAAGGACTACCATTTACTCACTGTTAGTGTTAGGTTCTGTAGTGTA GGAGTTGAGCTGCTGAGTAACCCTCGCTTGTAGTCT GGGCCTGATTCTTCGACTTCTTGAGCAACATCGTGTACTAAGCACTCGCTGATCGCTCTTTTGCAAGCATTGTTTTTTTTTGGGTTACTCTTGATGATGATTAGGCAAAAGTTATC                          ]
[+] EMBL CA999150             [                     CCTTCCCCCCCCCCATTCGTCGCCTCCTGTCCCGGGGGCCGCGAGCAAAACCCCCACCCCCAAATCGCAGCCTCGCTCAGCTCGATCTCTCTCTCGTCTCGCCATGGCCCCCAGCGACGACCTCGTCTACATGGCCAAGCTCGCCGAGCAGGCCGAGCGATACGACGAGATGGTGGAGGCAATGAATAGTGTGGCAAAGTTAGACGAGGGGCTGACAAAGGAGGAGAGGAACCTCCTCTCAGTTGGCTACAAGAATTTGATTGGTGCAAAGCGTGCGGCAATGCGTATCATTGGATCCATTGAGCTAAAGGAGGAGACAAAGGGCAAGGAGAGTCATGTAAGGCAGACTGCTGAGTATCGTCGCAAGGTGGAGGCTGAGATGGATAAAATCTGCTGTGATGTCATAAACATTATTGACAAGTACCTTATCCCACATTCCTCTGGAGCTGAGAGCTCAGTCTTCT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     ]
[+] EMBL AU057093             [                                                                                                                                                                                                                                                                                                                                                                                                                                                               TATCCCACATTCCTCTGGAGCTGAGAGCTCAGTCTTCTACTACAAAATGAAGGGAGATTACTACCGGTACCTTGCAGAGTTCAAGACTGGGACTGAGAAGATTGAAGTGTCTGAACTGTCACTCAATGCTTATGAGACTG CTTCCAAAACTGCGCAGACAGATCTCACT CCAACTGA CCCTATCAGACTTGGTTTAGCTCTGAATATATCTGTCTTCTACTGTGAGATCATGAACTCACCTGACAAAGCTTGCCAACTTGCTAAGAACGCCTTTGATGAAGCTGTTGCGGAG TTCCCTCCCTCAGTGAGGAGAATTACAAAGATAGTACACTGATCATGCAACTTCTGAGGGATAATCTAGCACTGTGGAATTCTGATATGGCTGATGATGCAGACGATATTAGGGAACGAACAGATACAACTGGTGCTAAAGGTGACCCTGCAGCGTGATGGAGGTGCTAATAGCTGGTAGAGTCGAAGCATAACAACAACAACAACAAGGGTGTGGTGGGGTGCGGAAGGACTACCATTTACTCACTGTTAGTGTTAGGTTCTGTAGTGTAGGGAGTTGAGCTGCTGAGTAACCCTCGCTTGTAGTCTGGGGCCTGATTCTTCGACTTCTTGAGCAACATCGTGTACTAAGCACTCGCTGATCGCNCTTTTGCAAGCATTGTTTTTTTTT                                                             ]
[+] EMBL AU057094             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       tcCAGAGTTCCANACT GGACTGAGAAGATTGAAGTGTCTGAACTGTCACTCAATGCTTATGAGACTGCCTCCCAAAACTGCGCAGACAGATCTCACTCCCAACTGACCCCTATCAGNCTTGGTTTAGCTCTGAATATATCTGTCTTCTNCTGTGAGATCATGAACTCACCTGACAAAGCTTNCCAACTTGCTAAGAACNCCTTTGATGAAGCTGTTGCGGAGCTTCCCTCCCTCAGTGAGGAGAATTACAAAGATAGTACACTGATCATGCAACTTCTGAGGGATAATCTAGCACTGTGGAATTCTGATATGGCTGATGATGCAGACGATATTAGGGAACGAACAGATACAACTGGTGCTAAAGGTGACCCTGCAGCGTGATGGAGGTGCTAATAGCTGGTAGAGTCGAAGCATAACAACAACAACAACAAGGGTGTGGTGGGGTGCGGAAGGACTACCATTTACTCACTGTTAGTGTTAGGTTCTGTAGTGTA GGAGTTGAGCTGCTGAGTAACCCTCGCTTGTAGTCT GGGCCTGATTCTTCGACTTCTTGAGCAACATCGTGTACTAAGCACCCGCTGATCGCTCTTTTGCAAGCATTGTTTTTTTTTGGGTTACTCTTGATGATGATTAGGCAAAAGTTATCTGGTTCATCAAAAAAAAAAAAAAAAA]


>consensus_8223#0 CCCCTCGCCTCGCATCCCACGCCTTCCCCCCCCCCATTCGTCGCCTCCTGTCCCGGGGGC CGCGAGCAAAACCCCCACCCCCAAATCGCAGCCTCGCTCAGCTCGATCTCTCTCTCGTCT CGCCATGGCCCCCAGCGACGACCTCGTCTACATGGCCAAGCTCGCCGAGCAGGCCGAGCG ATACGACGAGATGGTGGAGGCAATGAATAGTGTGGCAAAGTTAGACGAGGGGCTGACAAA GGAGGAGAGGAACCTCCTCTCAGTTGGCTACAAGAATTTGATTGGTGCAAAGCGTGCGGC AATGCGTATCATTGGATCCATTGAGCTAAAGGAGGAGACAAAGGGCAAGGAGAGTCATGT AAGGCAGACTGCTGAGTATCGTCGCAAGGTGGAGGCTGAGATGGATAAAATCTGCTGTGA TGTCATAAACATTATTGACAAGTACCTTATCCCACATTCCTCTGGAGCTGAGAGCTCAGT CTTCTACTACAAAATGAAGGGAGATTACTACCGGTACCTTGCAGAGTTCAAGACTGGGAC TGAGAAGATTGAAGTGTCTGAACTGTCACTCAATGCTTATGAGACTGCTTCCAAAACTGC GCAGACAGATCTCACTCCAACTGACCCTATCAGACTTGGTTTAGCTCTGAATATATCTGT CTTCTACTGTGAGATCATGAACTCACCTGACAAAGCTTGCCAACTTGCTAAGAACGCCTT TGATGAAGCTGTTGCGGAGCTTCCCTCCCTCAGTGAGGAGAATTACAAAGATAGTACACT GATCATGCAACTTCTGAGGGATAATCTAGCACTGTGGAATTCTGATATGGCTGATGATGC AGACGATATTAGGGAACGAACAGATACAACTGGTGCTAAAGGTGACCCTGCAGCGTGATG GAGGTGCTAATAGCTGGTAGAGTCGAAGCATAACAACAACAACAACAAGGGTGTGGTGGG GTGCGGAAGGACTACCATTTACTCACTGTTAGTGTTAGGTTCTGTAGTGTAGGAGTTGAG CTGCTGAGTAACCCTCGCTTGTAGTCTGGGCCTGATTCTTCGACTTCTTGAGCAACATCG TGTACTAAGCACTCGCTGATCGCTCTTTTGCAAGCATTGTTTTTTTTTGGGTTACTCTTG ATGATGATTAGGCAAAAGTTATCTGGTTCATCAAAAAAAAAAAAAAAAA



consensusID : consensus_8223#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 633
fasta sequence
                              [TTCCCGCGTTCCCCCTGTGCACGTTGACNCGGGAGNGGAGTATACGCTTGTACCCCACACANTGTGAACTTTAACGGCTTATACCCACACTTGAAGTGTTNCCCTGGGCCNACAANCCGTTGTTCCGTACGANGTGCGTGAANTATTATATNTTTCTTATTGGNCCACCCTTGTCTGCGGAATCTTCTTCCGTCGAACATTAATTCGGTCCTNGAATTTGGACTCGCCCACGTGTAGTCCGATTATCTCTACCGCGCGAANCAGCCNGAGACCCANTGAAGATACCACACTCTGGTTGCCCTATAAAGGTGACCCCTGCACGTCCGTTGATTGTGAGGTTGTCTATANTATGGCCTGGTANGAGTTCCGAAAGCCATTATACCANACCANACCANACCAATCAGGGTTGTTGGTGGGGTGCGGAAGGACTACCATTTACTCACTGTTAGCTGTTACGNTTCTGTAGTGTAGGAGTTGAGCTGCTGAGTAACCCTCGCTTGTAGTCTGGGCCTGATTCTTCGACTTCTTGAGCAACATCGTGTACTAAGCACTCCTGATCGCTCTTTTGCAAGCATTGTTTTTTTTTGGGTTACTCTTGATGATGNTTAGGCAAAGTTATCTGGTTCATCAAAA]

[+] EMBL BM419322             [TTCCCGCGTTCCCCCTGTGCACGTTGACNCGGGAGNGGAGTATACGCTTGTACCCCACACANTGTGAACTTTAACGGCTTATACCCACACTTGAAGTGTTNCCCTGGGCCNACAANCCGTTGTTCCGTACGANGTGCGTGAANTATTATATNTTTCTTATTGGNCCACCCTTGTCTGCGGAATCTTCTTCCGTCGAACATTAATTCGGTCCTNGAATTTGGACTCGCCCACGTGTAGTCCGATTATCTCTACCGCGCGAANCAGCCNGAGACCCANTGAAGATACCACACTCTGGTTGCCCTATAAAGGTGACCCCTGCACGTCCGTTGATTGTGAGGTTGTCTATANTATGGCCTGGTANGAGTTCCGAAAGCCATTATACCANACCANACCANACCAATCAGGGTTGTTGGTGGGGTGCGGAAGGACTACCATTTACTCACTGTTAGCTGTTACGNTTCTGTAGTGTAGGAGTTGAGCTGCTGAGTAACCCTCGCTTGTAGTCTGGGCCTGATTCTTCGACTTCTTGAGCAACATCGTGTACTAAGCACTCCTGATCGCTCTTTTGCAAGCATTGTTTTTTTTTGGGTTACTCTTGATGATGNTTAGGCAAAGTTATCTGGTTCATCAAAA]


>consensus_8223#1 TTCCCGCGTTCCCCCTGTGCACGTTGACNCGGGAGNGGAGTATACGCTTGTACCCCACAC ANTGTGAACTTTAACGGCTTATACCCACACTTGAAGTGTTNCCCTGGGCCNACAANCCGT TGTTCCGTACGANGTGCGTGAANTATTATATNTTTCTTATTGGNCCACCCTTGTCTGCGG AATCTTCTTCCGTCGAACATTAATTCGGTCCTNGAATTTGGACTCGCCCACGTGTAGTCC GATTATCTCTACCGCGCGAANCAGCCNGAGACCCANTGAAGATACCACACTCTGGTTGCC CTATAAAGGTGACCCCTGCACGTCCGTTGATTGTGAGGTTGTCTATANTATGGCCTGGTA NGAGTTCCGAAAGCCATTATACCANACCANACCANACCAATCAGGGTTGTTGGTGGGGTG CGGAAGGACTACCATTTACTCACTGTTAGCTGTTACGNTTCTGTAGTGTAGGAGTTGAGC TGCTGAGTAACCCTCGCTTGTAGTCTGGGCCTGATTCTTCGACTTCTTGAGCAACATCGT GTACTAAGCACTCCTGATCGCTCTTTTGCAAGCATTGTTTTTTTTTGGGTTACTCTTGAT GATGNTTAGGCAAAGTTATCTGGTTCATCAAAA



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_8223#0      CCCCTCGCCTCGCATCCCACGCCTTCCCCCCCCCCATTCGTCGCCTCCTGTCCCGGGGGC 60
consensus_8223#1      ------------------------------------------------------------
                                                                                  

consensus_8223#0      CGCGAGCAAAACCCCCACCCCCAAATCGCAGCCTCGCTCAGCTCGATCTCTCTCTCGTCT 120
consensus_8223#1      ------------------------------------------------------------
                                                                                  

consensus_8223#0      CGCCATGGCCCCCAGCGACGACCTCGTCTACATGGCCAAGCTCGCCGAGCAGGCCGAGCG 180
consensus_8223#1      ------------------------------------------------------------
                                                                                  

consensus_8223#0      ATACGACGAGATGGTGGAGGCAATGAATAGTGTGGCAAAGTTAGACGAGGGGCTGACAAA 240
consensus_8223#1      ------------------------------------------------------------
                                                                                  

consensus_8223#0      GGAGGAGAGGAACCTCCTCTCAGTTGGCTACAAGAATTTGATTGGTGCAAAGCGTGCGGC 300
consensus_8223#1      ------------------------------------------------------------
                                                                                  

consensus_8223#0      AATGCGTATCATTGGATCCATTGAGCTAAAGGAGGAGACAAAGGGCAAGGAGAGTCATGT 360
consensus_8223#1      ------------------------------------------------------------
                                                                                  

consensus_8223#0      AAGGCAGACTGCTGAGTATCGTCGCAAGGTGGAGGCTGAGATGGATAAAATCTGCTGTGA 420
consensus_8223#1      ------------------------------------------------------------
                                                                                  

consensus_8223#0      TGTCATAAACATTATTGACAAGTACCTTATCCCACATTCCTCTGGAGCTGAGAGCTCAGT 480
consensus_8223#1      ------------------------------------------------------------
                                                                                  

consensus_8223#0      CTTCTACTACAAAATGAAGGGAGATTACTACCGGTACCTTGCAGAGTTCAAGACTGGGAC 540
consensus_8223#1      ------------------------TTCCCGCGTTCCCCCTGTGCACGTTGACNCGGGAGN 36
                                              ** *  *     ** **   *  *  *  * **   

consensus_8223#0      TGAGAAGATTGAAGTGTCTGAACTGTCACTCAATGCTTA-TGAGACTGCTTCCAAAACTG 599
consensus_8223#1      GGAGTATAC------GCTTGTACC-CCACACANTGTGAACTTTAACGGCTT--ATACCCA 87
                       *** * *       *  ** **   *** ** **   * *   ** ****  * * *  

consensus_8223#0      CGCAGACAGATCTCACTCCAACTGACCCTATCAGACTTGGTTTAGCTCTGAATATATCTG 659
consensus_8223#1      CACTTGAAGTGTTNCC-----CTGGGCCNACAANCCGTTGTTCCGTACGANGTGCGTGA- 141
                      * *    **   *  *     ***  ** *  *  * * ***  *  *    *   *   

consensus_8223#0      TCTTCTACTGTGAGATCATGAACTCACCTGACAAAGCTTGCCAACTTGCTAAGAACGCCT 719
consensus_8223#1      ------ANTATTATATNTTT--CTTATTGGNCCACCCTTGTC----TGCGGAATCTTCTT 189
                            * * * * **  *   ** *   * * *  **** *    ***  *     * *

consensus_8223#0      TTGATGAAGCTGTTGCGGAGCTTCCCTCCCTCAGTGAGGAGAATTACAAAGATAGTACAC 779
consensus_8223#1      CCGTCGAA-------CATTAATTCGGTCCTNGAATTTGGACTCGCCCACGTGTAGTCCGA 242
                        *  ***       *     ***  ***   * *  ***      **    **** *  

consensus_8223#0      TGATCATGCAACTTCTGAGGGATAATCTAGCACTGTGGAATTCTGATATGGCTGATGATG 839
consensus_8223#1      TTATC-TCTACCGCGCGAANCAGCCNGAGACCCANTGAAGATACCACACT-CTGGTTGCC 300
                      * *** *  * *    **   *        * *  ** *  *   * *   *** *    

consensus_8223#0      CAGACGATATTAGGGAACGAACAGATACAACTGGTGCTAAAGGTGACCCTGCAGCGTGAT 899
consensus_8223#1      CT-ATAAAGGTGACCCCTGCACGTCCGTTGATTGTGAGGTTGTCTATANTATGGCCTGGT 359
                      *  *  *   *       * **         * ***     *   *   *   ** ** *

consensus_8223#0      GGAGGTGCTAATAGCTGGTAGAGTCGAAGCATAACAACAACAACAACAAGGGTGT-GGTG 958
consensus_8223#1      ANGAGTTCCGAAAGCCATTATA--CCANACCANACCANACCAAT--CAGGGTTGTTGGTG 415
                          ** *  * ***   ** *  * *  *   ** * * ***   ** ** *** ****

consensus_8223#0      GGGTGCGGAAGGACTACCATTTACTCACTGTTAG-TGTTA-GGTTCTGTAGTGTAGGAGT 1016
consensus_8223#1      GGGTGCGGAAGGACTACCATTTACTCACTGTTAGCTGTTACGNTTCTGTAGTGTAGGAGT 475
                      ********************************** ***** * *****************

consensus_8223#0      TGAGCTGCTGAGTAACCCTCGCTTGTAGTCTGGGCCTGATTCTTCGACTTCTTGAGCAAC 1076
consensus_8223#1      TGAGCTGCTGAGTAACCCTCGCTTGTAGTCTGGGCCTGATTCTTCGACTTCTTGAGCAAC 535
                      ************************************************************

consensus_8223#0      ATCGTGTACTAAGCACTCGCTGATCGCTCTTTTGCAAGCATTGTTTTTTTTTGGGTTACT 1136
consensus_8223#1      ATCGTGTACTAAGCACTC-CTGATCGCTCTTTTGCAAGCATTGTTTTTTTTTGGGTTACT 594
                      ****************** *****************************************

consensus_8223#0      CTTGATGATGATTAGGCAAAAGTTATCTGGTTCATCAAAAAAAAAAAAAAAAA 1189
consensus_8223#1      CTTGATGATGNTTAGGCAAA-GTTATCTGGTTCATCAAAA------------- 633
                      ********** ********* *******************             




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)