These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8223#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 1189 fasta sequence [CCCCTCGCCTCGCATCCCACGCCTTCCCCCCCCCCATTCGTCGCCTCCTGTCCCGGGGGCCGCGAGCAAAACCCCCACCCCCAAATCGCAGCCTCGCTCAGCTCGATCTCTCTCTCGTCTCGCCATGGCCCCCAGCGACGACCTCGTCTACATGGCCAAGCTCGCCGAGCAGGCCGAGCGATACGACGAGATGGTGGAGGCAATGAATAGTGTGGCAAAGTTAGACGAGGGGCTGACAAAGGAGGAGAGGAACCTCCTCTCAGTTGGCTACAAGAATTTGATTGGTGCAAAGCGTGCGGCAATGCGTATCATTGGATCCATTGAGCTAAAGGAGGAGACAAAGGGCAAGGAGAGTCATGTAAGGCAGACTGCTGAGTATCGTCGCAAGGTGGAGGCTGAGATGGATAAAATCTGCTGTGATGTCATAAACATTATTGACAAGTACCTTATCCCACATTCCTCTGGAGCTGAGAGCTCAGTCTTCTACTACAAAATGAAGGGAGATTACTACCGGTACCTTGCAGAGTTCAAGACTGGGACTGAGAAGATTGAAGTGTCTGAACTGTCACTCAATGCTTATGAGACTG-CTTCCAAAACTGCGCAGACAGATCTCACT-CCAACTGA-CCCTATCAGACTTGGTTTAGCTCTGAATATATCTGTCTTCTACTGTGAGATCATGAACTCACCTGACAAAGCTTGCCAACTTGCTAAGAACGCCTTTGATGAAGCTGTTGCGGAGCTTCCCTCCCTCAGTGAGGAGAATTACAAAGATAGTACACTGATCATGCAACTTCTGAGGGATAATCTAGCACTGTGGAATTCTGATATGGCTGATGATGCAGACGATATTAGGGAACGAACAGATACAACTGGTGCTAAAGGTGACCCTGCAGCGTGATGGAGGTGCTAATAGCTGGTAGAGTCGAAGCATAACAACAACAACAACAAGGGTGTGGTGGGGTGCGGAAGGACTACCATTTACTCACTGTTAGTGTTAGGTTCTGTAGTGTA-GGAGTTGAGCTGCTGAGTAACCCTCGCTTGTAGTCT-GGGCCTGATTCTTCGACTTCTTGAGCAACATCGTGTACTAAGCACTCGCTGATCGCTCTTTTGCAAGCATTGTTTTTTTTTGGGTTACTCTTGATGATGATTAGGCAAAAGTTATCTGGTTCATCAAAAAAAAAAAAAAAAA] [+] EMBL AK103145 [CCCCTCGCCTCGCATCCCACGCCTTCCCCCCCCCCATTCGTCGCCTCCTGTCCCGGGGGCCGCGAGCAAAACCCCCACCCCCAAATCGCAGCCTCGCTCAGCTCGATCTCTCTCTCGTCTCGCCATGGCCCCCAGCGACGACCTCGTCTACATGGCCAAGCTCGCCGAGCAGGCCGAGCGATACGACGAGATGGTGGAGGCAATGAATAGTGTGGCAAAGTTAGACGAGGGGCTGACAAAGGAGGAGAGGAACCTCCTCTCAGTTGGCTACAAGAATTTGATTGGTGCAAAGCGTGCGGCAATGCGTATCATTGGATCCATTGAGCTAAAGGAGGAGACAAAGGGCAAGGAGAGTCATGTAAGGCAGACTGCTGAGTATCGTCGCAAGGTGGAGGCTGAGATGGATAAAATCTGCTGTGATGTCATAAACATTATTGACAAGTACCTTATCCCACATTCCTCTGGAGCTGAGAGCTCAGTCTTCTACTACAAAATGAAGGGAGATTACTACCGGTACCTTGCAGAGTTCAAGACTGGGACTGAGAAGATTGAAGTGTCTGAACTGTCACTCAATGCTTATGAGACTG CTTCCAAAACTGCGCAGACAGATCTCACT CCAACTGA CCCTATCAGACTTGGTTTAGCTCTGAATATATCTGTCTTCTACTGTGAGATCATGAACTCACCTGACAAAGCTTGCCAACTTGCTAAGAACGCCTTTGATGAAGCTGTTGCGGAGCTTCCCTCCCTCAGTGAGGAGAATTACAAAGATAGTACACTGATCATGCAACTTCTGAGGGATAATCTAGCACTGTGGAATTCTGATATGGCTGATGATGCAGACGATATTAGGGAACGAACAGATACAACTGGTGCTAAAGGTGACCCTGCAGCGTGATGGAGGTGCTAATAGCTGGTAGAGTCGAAGCATAACAACAACAACAACAAGGGTGTGGTGGGGTGCGGAAGGACTACCATTTACTCACTGTTAGTGTTAGGTTCTGTAGTGTA GGAGTTGAGCTGCTGAGTAACCCTCGCTTGTAGTCT GGGCCTGATTCTTCGACTTCTTGAGCAACATCGTGTACTAAGCACTCGCTGATCGCTCTTTTGCAAGCATTGTTTTTTTTTGGGTTACTCTTGATGATGATTAGGCAAAAGTTATC ] [+] EMBL CA999150 [ CCTTCCCCCCCCCCATTCGTCGCCTCCTGTCCCGGGGGCCGCGAGCAAAACCCCCACCCCCAAATCGCAGCCTCGCTCAGCTCGATCTCTCTCTCGTCTCGCCATGGCCCCCAGCGACGACCTCGTCTACATGGCCAAGCTCGCCGAGCAGGCCGAGCGATACGACGAGATGGTGGAGGCAATGAATAGTGTGGCAAAGTTAGACGAGGGGCTGACAAAGGAGGAGAGGAACCTCCTCTCAGTTGGCTACAAGAATTTGATTGGTGCAAAGCGTGCGGCAATGCGTATCATTGGATCCATTGAGCTAAAGGAGGAGACAAAGGGCAAGGAGAGTCATGTAAGGCAGACTGCTGAGTATCGTCGCAAGGTGGAGGCTGAGATGGATAAAATCTGCTGTGATGTCATAAACATTATTGACAAGTACCTTATCCCACATTCCTCTGGAGCTGAGAGCTCAGTCTTCT ] [+] EMBL AU057093 [ TATCCCACATTCCTCTGGAGCTGAGAGCTCAGTCTTCTACTACAAAATGAAGGGAGATTACTACCGGTACCTTGCAGAGTTCAAGACTGGGACTGAGAAGATTGAAGTGTCTGAACTGTCACTCAATGCTTATGAGACTG CTTCCAAAACTGCGCAGACAGATCTCACT CCAACTGA CCCTATCAGACTTGGTTTAGCTCTGAATATATCTGTCTTCTACTGTGAGATCATGAACTCACCTGACAAAGCTTGCCAACTTGCTAAGAACGCCTTTGATGAAGCTGTTGCGGAG TTCCCTCCCTCAGTGAGGAGAATTACAAAGATAGTACACTGATCATGCAACTTCTGAGGGATAATCTAGCACTGTGGAATTCTGATATGGCTGATGATGCAGACGATATTAGGGAACGAACAGATACAACTGGTGCTAAAGGTGACCCTGCAGCGTGATGGAGGTGCTAATAGCTGGTAGAGTCGAAGCATAACAACAACAACAACAAGGGTGTGGTGGGGTGCGGAAGGACTACCATTTACTCACTGTTAGTGTTAGGTTCTGTAGTGTAGGGAGTTGAGCTGCTGAGTAACCCTCGCTTGTAGTCTGGGGCCTGATTCTTCGACTTCTTGAGCAACATCGTGTACTAAGCACTCGCTGATCGCNCTTTTGCAAGCATTGTTTTTTTTT ] [+] EMBL AU057094 [ tcCAGAGTTCCANACT GGACTGAGAAGATTGAAGTGTCTGAACTGTCACTCAATGCTTATGAGACTGCCTCCCAAAACTGCGCAGACAGATCTCACTCCCAACTGACCCCTATCAGNCTTGGTTTAGCTCTGAATATATCTGTCTTCTNCTGTGAGATCATGAACTCACCTGACAAAGCTTNCCAACTTGCTAAGAACNCCTTTGATGAAGCTGTTGCGGAGCTTCCCTCCCTCAGTGAGGAGAATTACAAAGATAGTACACTGATCATGCAACTTCTGAGGGATAATCTAGCACTGTGGAATTCTGATATGGCTGATGATGCAGACGATATTAGGGAACGAACAGATACAACTGGTGCTAAAGGTGACCCTGCAGCGTGATGGAGGTGCTAATAGCTGGTAGAGTCGAAGCATAACAACAACAACAACAAGGGTGTGGTGGGGTGCGGAAGGACTACCATTTACTCACTGTTAGTGTTAGGTTCTGTAGTGTA GGAGTTGAGCTGCTGAGTAACCCTCGCTTGTAGTCT GGGCCTGATTCTTCGACTTCTTGAGCAACATCGTGTACTAAGCACCCGCTGATCGCTCTTTTGCAAGCATTGTTTTTTTTTGGGTTACTCTTGATGATGATTAGGCAAAAGTTATCTGGTTCATCAAAAAAAAAAAAAAAAA] consensusID : consensus_8223#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 633 fasta sequence [TTCCCGCGTTCCCCCTGTGCACGTTGACNCGGGAGNGGAGTATACGCTTGTACCCCACACANTGTGAACTTTAACGGCTTATACCCACACTTGAAGTGTTNCCCTGGGCCNACAANCCGTTGTTCCGTACGANGTGCGTGAANTATTATATNTTTCTTATTGGNCCACCCTTGTCTGCGGAATCTTCTTCCGTCGAACATTAATTCGGTCCTNGAATTTGGACTCGCCCACGTGTAGTCCGATTATCTCTACCGCGCGAANCAGCCNGAGACCCANTGAAGATACCACACTCTGGTTGCCCTATAAAGGTGACCCCTGCACGTCCGTTGATTGTGAGGTTGTCTATANTATGGCCTGGTANGAGTTCCGAAAGCCATTATACCANACCANACCANACCAATCAGGGTTGTTGGTGGGGTGCGGAAGGACTACCATTTACTCACTGTTAGCTGTTACGNTTCTGTAGTGTAGGAGTTGAGCTGCTGAGTAACCCTCGCTTGTAGTCTGGGCCTGATTCTTCGACTTCTTGAGCAACATCGTGTACTAAGCACTCCTGATCGCTCTTTTGCAAGCATTGTTTTTTTTTGGGTTACTCTTGATGATGNTTAGGCAAAGTTATCTGGTTCATCAAAA] [+] EMBL BM419322 [TTCCCGCGTTCCCCCTGTGCACGTTGACNCGGGAGNGGAGTATACGCTTGTACCCCACACANTGTGAACTTTAACGGCTTATACCCACACTTGAAGTGTTNCCCTGGGCCNACAANCCGTTGTTCCGTACGANGTGCGTGAANTATTATATNTTTCTTATTGGNCCACCCTTGTCTGCGGAATCTTCTTCCGTCGAACATTAATTCGGTCCTNGAATTTGGACTCGCCCACGTGTAGTCCGATTATCTCTACCGCGCGAANCAGCCNGAGACCCANTGAAGATACCACACTCTGGTTGCCCTATAAAGGTGACCCCTGCACGTCCGTTGATTGTGAGGTTGTCTATANTATGGCCTGGTANGAGTTCCGAAAGCCATTATACCANACCANACCANACCAATCAGGGTTGTTGGTGGGGTGCGGAAGGACTACCATTTACTCACTGTTAGCTGTTACGNTTCTGTAGTGTAGGAGTTGAGCTGCTGAGTAACCCTCGCTTGTAGTCTGGGCCTGATTCTTCGACTTCTTGAGCAACATCGTGTACTAAGCACTCCTGATCGCTCTTTTGCAAGCATTGTTTTTTTTTGGGTTACTCTTGATGATGNTTAGGCAAAGTTATCTGGTTCATCAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_8223#0 CCCCTCGCCTCGCATCCCACGCCTTCCCCCCCCCCATTCGTCGCCTCCTGTCCCGGGGGC 60 consensus_8223#1 ------------------------------------------------------------ consensus_8223#0 CGCGAGCAAAACCCCCACCCCCAAATCGCAGCCTCGCTCAGCTCGATCTCTCTCTCGTCT 120 consensus_8223#1 ------------------------------------------------------------ consensus_8223#0 CGCCATGGCCCCCAGCGACGACCTCGTCTACATGGCCAAGCTCGCCGAGCAGGCCGAGCG 180 consensus_8223#1 ------------------------------------------------------------ consensus_8223#0 ATACGACGAGATGGTGGAGGCAATGAATAGTGTGGCAAAGTTAGACGAGGGGCTGACAAA 240 consensus_8223#1 ------------------------------------------------------------ consensus_8223#0 GGAGGAGAGGAACCTCCTCTCAGTTGGCTACAAGAATTTGATTGGTGCAAAGCGTGCGGC 300 consensus_8223#1 ------------------------------------------------------------ consensus_8223#0 AATGCGTATCATTGGATCCATTGAGCTAAAGGAGGAGACAAAGGGCAAGGAGAGTCATGT 360 consensus_8223#1 ------------------------------------------------------------ consensus_8223#0 AAGGCAGACTGCTGAGTATCGTCGCAAGGTGGAGGCTGAGATGGATAAAATCTGCTGTGA 420 consensus_8223#1 ------------------------------------------------------------ consensus_8223#0 TGTCATAAACATTATTGACAAGTACCTTATCCCACATTCCTCTGGAGCTGAGAGCTCAGT 480 consensus_8223#1 ------------------------------------------------------------ consensus_8223#0 CTTCTACTACAAAATGAAGGGAGATTACTACCGGTACCTTGCAGAGTTCAAGACTGGGAC 540 consensus_8223#1 ------------------------TTCCCGCGTTCCCCCTGTGCACGTTGACNCGGGAGN 36 ** * * ** ** * * * * ** consensus_8223#0 TGAGAAGATTGAAGTGTCTGAACTGTCACTCAATGCTTA-TGAGACTGCTTCCAAAACTG 599 consensus_8223#1 GGAGTATAC------GCTTGTACC-CCACACANTGTGAACTTTAACGGCTT--ATACCCA 87 *** * * * ** ** *** ** ** * * ** **** * * * consensus_8223#0 CGCAGACAGATCTCACTCCAACTGACCCTATCAGACTTGGTTTAGCTCTGAATATATCTG 659 consensus_8223#1 CACTTGAAGTGTTNCC-----CTGGGCCNACAANCCGTTGTTCCGTACGANGTGCGTGA- 141 * * ** * * *** ** * * * * *** * * * * consensus_8223#0 TCTTCTACTGTGAGATCATGAACTCACCTGACAAAGCTTGCCAACTTGCTAAGAACGCCT 719 consensus_8223#1 ------ANTATTATATNTTT--CTTATTGGNCCACCCTTGTC----TGCGGAATCTTCTT 189 * * * * ** * ** * * * * **** * *** * * * consensus_8223#0 TTGATGAAGCTGTTGCGGAGCTTCCCTCCCTCAGTGAGGAGAATTACAAAGATAGTACAC 779 consensus_8223#1 CCGTCGAA-------CATTAATTCGGTCCTNGAATTTGGACTCGCCCACGTGTAGTCCGA 242 * *** * *** *** * * *** ** **** * consensus_8223#0 TGATCATGCAACTTCTGAGGGATAATCTAGCACTGTGGAATTCTGATATGGCTGATGATG 839 consensus_8223#1 TTATC-TCTACCGCGCGAANCAGCCNGAGACCCANTGAAGATACCACACT-CTGGTTGCC 300 * *** * * * ** * * * ** * * * * *** * consensus_8223#0 CAGACGATATTAGGGAACGAACAGATACAACTGGTGCTAAAGGTGACCCTGCAGCGTGAT 899 consensus_8223#1 CT-ATAAAGGTGACCCCTGCACGTCCGTTGATTGTGAGGTTGTCTATANTATGGCCTGGT 359 * * * * * ** * *** * * * ** ** * consensus_8223#0 GGAGGTGCTAATAGCTGGTAGAGTCGAAGCATAACAACAACAACAACAAGGGTGT-GGTG 958 consensus_8223#1 ANGAGTTCCGAAAGCCATTATA--CCANACCANACCANACCAAT--CAGGGTTGTTGGTG 415 ** * * *** ** * * * * ** * * *** ** ** *** **** consensus_8223#0 GGGTGCGGAAGGACTACCATTTACTCACTGTTAG-TGTTA-GGTTCTGTAGTGTAGGAGT 1016 consensus_8223#1 GGGTGCGGAAGGACTACCATTTACTCACTGTTAGCTGTTACGNTTCTGTAGTGTAGGAGT 475 ********************************** ***** * ***************** consensus_8223#0 TGAGCTGCTGAGTAACCCTCGCTTGTAGTCTGGGCCTGATTCTTCGACTTCTTGAGCAAC 1076 consensus_8223#1 TGAGCTGCTGAGTAACCCTCGCTTGTAGTCTGGGCCTGATTCTTCGACTTCTTGAGCAAC 535 ************************************************************ consensus_8223#0 ATCGTGTACTAAGCACTCGCTGATCGCTCTTTTGCAAGCATTGTTTTTTTTTGGGTTACT 1136 consensus_8223#1 ATCGTGTACTAAGCACTC-CTGATCGCTCTTTTGCAAGCATTGTTTTTTTTTGGGTTACT 594 ****************** ***************************************** consensus_8223#0 CTTGATGATGATTAGGCAAAAGTTATCTGGTTCATCAAAAAAAAAAAAAAAAA 1189 consensus_8223#1 CTTGATGATGNTTAGGCAAA-GTTATCTGGTTCATCAAAA------------- 633 ********** ********* ******************* |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||