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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8223#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 1189 fasta sequence
[CCCCTCGCCTCGCATCCCACGCCTTCCCCCCCCCCATTCGTCGCCTCCTGTCCCGGGGGCCGCGAGCAAAACCCCCACCCCCAAATCGCAGCCTCGCTCAGCTCGATCTCTCTCTCGTCTCGCCATGGCCCCCAGCGACGACCTCGTCTACATGGCCAAGCTCGCCGAGCAGGCCGAGCGATACGACGAGATGGTGGAGGCAATGAATAGTGTGGCAAAGTTAGACGAGGGGCTGACAAAGGAGGAGAGGAACCTCCTCTCAGTTGGCTACAAGAATTTGATTGGTGCAAAGCGTGCGGCAATGCGTATCATTGGATCCATTGAGCTAAAGGAGGAGACAAAGGGCAAGGAGAGTCATGTAAGGCAGACTGCTGAGTATCGTCGCAAGGTGGAGGCTGAGATGGATAAAATCTGCTGTGATGTCATAAACATTATTGACAAGTACCTTATCCCACATTCCTCTGGAGCTGAGAGCTCAGTCTTCTACTACAAAATGAAGGGAGATTACTACCGGTACCTTGCAGAGTTCAAGACTGGGACTGAGAAGATTGAAGTGTCTGAACTGTCACTCAATGCTTATGAGACTG-CTTCCAAAACTGCGCAGACAGATCTCACT-CCAACTGA-CCCTATCAGACTTGGTTTAGCTCTGAATATATCTGTCTTCTACTGTGAGATCATGAACTCACCTGACAAAGCTTGCCAACTTGCTAAGAACGCCTTTGATGAAGCTGTTGCGGAGCTTCCCTCCCTCAGTGAGGAGAATTACAAAGATAGTACACTGATCATGCAACTTCTGAGGGATAATCTAGCACTGTGGAATTCTGATATGGCTGATGATGCAGACGATATTAGGGAACGAACAGATACAACTGGTGCTAAAGGTGACCCTGCAGCGTGATGGAGGTGCTAATAGCTGGTAGAGTCGAAGCATAACAACAACAACAACAAGGGTGTGGTGGGGTGCGGAAGGACTACCATTTACTCACTGTTAGTGTTAGGTTCTGTAGTGTA-GGAGTTGAGCTGCTGAGTAACCCTCGCTTGTAGTCT-GGGCCTGATTCTTCGACTTCTTGAGCAACATCGTGTACTAAGCACTCGCTGATCGCTCTTTTGCAAGCATTGTTTTTTTTTGGGTTACTCTTGATGATGATTAGGCAAAAGTTATCTGGTTCATCAAAAAAAAAAAAAAAAA]
[+] EMBL AK103145 [CCCCTCGCCTCGCATCCCACGCCTTCCCCCCCCCCATTCGTCGCCTCCTGTCCCGGGGGCCGCGAGCAAAACCCCCACCCCCAAATCGCAGCCTCGCTCAGCTCGATCTCTCTCTCGTCTCGCCATGGCCCCCAGCGACGACCTCGTCTACATGGCCAAGCTCGCCGAGCAGGCCGAGCGATACGACGAGATGGTGGAGGCAATGAATAGTGTGGCAAAGTTAGACGAGGGGCTGACAAAGGAGGAGAGGAACCTCCTCTCAGTTGGCTACAAGAATTTGATTGGTGCAAAGCGTGCGGCAATGCGTATCATTGGATCCATTGAGCTAAAGGAGGAGACAAAGGGCAAGGAGAGTCATGTAAGGCAGACTGCTGAGTATCGTCGCAAGGTGGAGGCTGAGATGGATAAAATCTGCTGTGATGTCATAAACATTATTGACAAGTACCTTATCCCACATTCCTCTGGAGCTGAGAGCTCAGTCTTCTACTACAAAATGAAGGGAGATTACTACCGGTACCTTGCAGAGTTCAAGACTGGGACTGAGAAGATTGAAGTGTCTGAACTGTCACTCAATGCTTATGAGACTG CTTCCAAAACTGCGCAGACAGATCTCACT CCAACTGA CCCTATCAGACTTGGTTTAGCTCTGAATATATCTGTCTTCTACTGTGAGATCATGAACTCACCTGACAAAGCTTGCCAACTTGCTAAGAACGCCTTTGATGAAGCTGTTGCGGAGCTTCCCTCCCTCAGTGAGGAGAATTACAAAGATAGTACACTGATCATGCAACTTCTGAGGGATAATCTAGCACTGTGGAATTCTGATATGGCTGATGATGCAGACGATATTAGGGAACGAACAGATACAACTGGTGCTAAAGGTGACCCTGCAGCGTGATGGAGGTGCTAATAGCTGGTAGAGTCGAAGCATAACAACAACAACAACAAGGGTGTGGTGGGGTGCGGAAGGACTACCATTTACTCACTGTTAGTGTTAGGTTCTGTAGTGTA GGAGTTGAGCTGCTGAGTAACCCTCGCTTGTAGTCT GGGCCTGATTCTTCGACTTCTTGAGCAACATCGTGTACTAAGCACTCGCTGATCGCTCTTTTGCAAGCATTGTTTTTTTTTGGGTTACTCTTGATGATGATTAGGCAAAAGTTATC ]
[+] EMBL CA999150 [ CCTTCCCCCCCCCCATTCGTCGCCTCCTGTCCCGGGGGCCGCGAGCAAAACCCCCACCCCCAAATCGCAGCCTCGCTCAGCTCGATCTCTCTCTCGTCTCGCCATGGCCCCCAGCGACGACCTCGTCTACATGGCCAAGCTCGCCGAGCAGGCCGAGCGATACGACGAGATGGTGGAGGCAATGAATAGTGTGGCAAAGTTAGACGAGGGGCTGACAAAGGAGGAGAGGAACCTCCTCTCAGTTGGCTACAAGAATTTGATTGGTGCAAAGCGTGCGGCAATGCGTATCATTGGATCCATTGAGCTAAAGGAGGAGACAAAGGGCAAGGAGAGTCATGTAAGGCAGACTGCTGAGTATCGTCGCAAGGTGGAGGCTGAGATGGATAAAATCTGCTGTGATGTCATAAACATTATTGACAAGTACCTTATCCCACATTCCTCTGGAGCTGAGAGCTCAGTCTTCT ]
[+] EMBL AU057093 [ TATCCCACATTCCTCTGGAGCTGAGAGCTCAGTCTTCTACTACAAAATGAAGGGAGATTACTACCGGTACCTTGCAGAGTTCAAGACTGGGACTGAGAAGATTGAAGTGTCTGAACTGTCACTCAATGCTTATGAGACTG CTTCCAAAACTGCGCAGACAGATCTCACT CCAACTGA CCCTATCAGACTTGGTTTAGCTCTGAATATATCTGTCTTCTACTGTGAGATCATGAACTCACCTGACAAAGCTTGCCAACTTGCTAAGAACGCCTTTGATGAAGCTGTTGCGGAG TTCCCTCCCTCAGTGAGGAGAATTACAAAGATAGTACACTGATCATGCAACTTCTGAGGGATAATCTAGCACTGTGGAATTCTGATATGGCTGATGATGCAGACGATATTAGGGAACGAACAGATACAACTGGTGCTAAAGGTGACCCTGCAGCGTGATGGAGGTGCTAATAGCTGGTAGAGTCGAAGCATAACAACAACAACAACAAGGGTGTGGTGGGGTGCGGAAGGACTACCATTTACTCACTGTTAGTGTTAGGTTCTGTAGTGTAGGGAGTTGAGCTGCTGAGTAACCCTCGCTTGTAGTCTGGGGCCTGATTCTTCGACTTCTTGAGCAACATCGTGTACTAAGCACTCGCTGATCGCNCTTTTGCAAGCATTGTTTTTTTTT ]
[+] EMBL AU057094 [ tcCAGAGTTCCANACT GGACTGAGAAGATTGAAGTGTCTGAACTGTCACTCAATGCTTATGAGACTGCCTCCCAAAACTGCGCAGACAGATCTCACTCCCAACTGACCCCTATCAGNCTTGGTTTAGCTCTGAATATATCTGTCTTCTNCTGTGAGATCATGAACTCACCTGACAAAGCTTNCCAACTTGCTAAGAACNCCTTTGATGAAGCTGTTGCGGAGCTTCCCTCCCTCAGTGAGGAGAATTACAAAGATAGTACACTGATCATGCAACTTCTGAGGGATAATCTAGCACTGTGGAATTCTGATATGGCTGATGATGCAGACGATATTAGGGAACGAACAGATACAACTGGTGCTAAAGGTGACCCTGCAGCGTGATGGAGGTGCTAATAGCTGGTAGAGTCGAAGCATAACAACAACAACAACAAGGGTGTGGTGGGGTGCGGAAGGACTACCATTTACTCACTGTTAGTGTTAGGTTCTGTAGTGTA GGAGTTGAGCTGCTGAGTAACCCTCGCTTGTAGTCT GGGCCTGATTCTTCGACTTCTTGAGCAACATCGTGTACTAAGCACCCGCTGATCGCTCTTTTGCAAGCATTGTTTTTTTTTGGGTTACTCTTGATGATGATTAGGCAAAAGTTATCTGGTTCATCAAAAAAAAAAAAAAAAA]
consensusID : consensus_8223#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 633 fasta sequence
[TTCCCGCGTTCCCCCTGTGCACGTTGACNCGGGAGNGGAGTATACGCTTGTACCCCACACANTGTGAACTTTAACGGCTTATACCCACACTTGAAGTGTTNCCCTGGGCCNACAANCCGTTGTTCCGTACGANGTGCGTGAANTATTATATNTTTCTTATTGGNCCACCCTTGTCTGCGGAATCTTCTTCCGTCGAACATTAATTCGGTCCTNGAATTTGGACTCGCCCACGTGTAGTCCGATTATCTCTACCGCGCGAANCAGCCNGAGACCCANTGAAGATACCACACTCTGGTTGCCCTATAAAGGTGACCCCTGCACGTCCGTTGATTGTGAGGTTGTCTATANTATGGCCTGGTANGAGTTCCGAAAGCCATTATACCANACCANACCANACCAATCAGGGTTGTTGGTGGGGTGCGGAAGGACTACCATTTACTCACTGTTAGCTGTTACGNTTCTGTAGTGTAGGAGTTGAGCTGCTGAGTAACCCTCGCTTGTAGTCTGGGCCTGATTCTTCGACTTCTTGAGCAACATCGTGTACTAAGCACTCCTGATCGCTCTTTTGCAAGCATTGTTTTTTTTTGGGTTACTCTTGATGATGNTTAGGCAAAGTTATCTGGTTCATCAAAA]
[+] EMBL BM419322 [TTCCCGCGTTCCCCCTGTGCACGTTGACNCGGGAGNGGAGTATACGCTTGTACCCCACACANTGTGAACTTTAACGGCTTATACCCACACTTGAAGTGTTNCCCTGGGCCNACAANCCGTTGTTCCGTACGANGTGCGTGAANTATTATATNTTTCTTATTGGNCCACCCTTGTCTGCGGAATCTTCTTCCGTCGAACATTAATTCGGTCCTNGAATTTGGACTCGCCCACGTGTAGTCCGATTATCTCTACCGCGCGAANCAGCCNGAGACCCANTGAAGATACCACACTCTGGTTGCCCTATAAAGGTGACCCCTGCACGTCCGTTGATTGTGAGGTTGTCTATANTATGGCCTGGTANGAGTTCCGAAAGCCATTATACCANACCANACCANACCAATCAGGGTTGTTGGTGGGGTGCGGAAGGACTACCATTTACTCACTGTTAGCTGTTACGNTTCTGTAGTGTAGGAGTTGAGCTGCTGAGTAACCCTCGCTTGTAGTCTGGGCCTGATTCTTCGACTTCTTGAGCAACATCGTGTACTAAGCACTCCTGATCGCTCTTTTGCAAGCATTGTTTTTTTTTGGGTTACTCTTGATGATGNTTAGGCAAAGTTATCTGGTTCATCAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_8223#0 CCCCTCGCCTCGCATCCCACGCCTTCCCCCCCCCCATTCGTCGCCTCCTGTCCCGGGGGC 60
consensus_8223#1 ------------------------------------------------------------
consensus_8223#0 CGCGAGCAAAACCCCCACCCCCAAATCGCAGCCTCGCTCAGCTCGATCTCTCTCTCGTCT 120
consensus_8223#1 ------------------------------------------------------------
consensus_8223#0 CGCCATGGCCCCCAGCGACGACCTCGTCTACATGGCCAAGCTCGCCGAGCAGGCCGAGCG 180
consensus_8223#1 ------------------------------------------------------------
consensus_8223#0 ATACGACGAGATGGTGGAGGCAATGAATAGTGTGGCAAAGTTAGACGAGGGGCTGACAAA 240
consensus_8223#1 ------------------------------------------------------------
consensus_8223#0 GGAGGAGAGGAACCTCCTCTCAGTTGGCTACAAGAATTTGATTGGTGCAAAGCGTGCGGC 300
consensus_8223#1 ------------------------------------------------------------
consensus_8223#0 AATGCGTATCATTGGATCCATTGAGCTAAAGGAGGAGACAAAGGGCAAGGAGAGTCATGT 360
consensus_8223#1 ------------------------------------------------------------
consensus_8223#0 AAGGCAGACTGCTGAGTATCGTCGCAAGGTGGAGGCTGAGATGGATAAAATCTGCTGTGA 420
consensus_8223#1 ------------------------------------------------------------
consensus_8223#0 TGTCATAAACATTATTGACAAGTACCTTATCCCACATTCCTCTGGAGCTGAGAGCTCAGT 480
consensus_8223#1 ------------------------------------------------------------
consensus_8223#0 CTTCTACTACAAAATGAAGGGAGATTACTACCGGTACCTTGCAGAGTTCAAGACTGGGAC 540
consensus_8223#1 ------------------------TTCCCGCGTTCCCCCTGTGCACGTTGACNCGGGAGN 36
** * * ** ** * * * * **
consensus_8223#0 TGAGAAGATTGAAGTGTCTGAACTGTCACTCAATGCTTA-TGAGACTGCTTCCAAAACTG 599
consensus_8223#1 GGAGTATAC------GCTTGTACC-CCACACANTGTGAACTTTAACGGCTT--ATACCCA 87
*** * * * ** ** *** ** ** * * ** **** * * *
consensus_8223#0 CGCAGACAGATCTCACTCCAACTGACCCTATCAGACTTGGTTTAGCTCTGAATATATCTG 659
consensus_8223#1 CACTTGAAGTGTTNCC-----CTGGGCCNACAANCCGTTGTTCCGTACGANGTGCGTGA- 141
* * ** * * *** ** * * * * *** * * * *
consensus_8223#0 TCTTCTACTGTGAGATCATGAACTCACCTGACAAAGCTTGCCAACTTGCTAAGAACGCCT 719
consensus_8223#1 ------ANTATTATATNTTT--CTTATTGGNCCACCCTTGTC----TGCGGAATCTTCTT 189
* * * * ** * ** * * * * **** * *** * * *
consensus_8223#0 TTGATGAAGCTGTTGCGGAGCTTCCCTCCCTCAGTGAGGAGAATTACAAAGATAGTACAC 779
consensus_8223#1 CCGTCGAA-------CATTAATTCGGTCCTNGAATTTGGACTCGCCCACGTGTAGTCCGA 242
* *** * *** *** * * *** ** **** *
consensus_8223#0 TGATCATGCAACTTCTGAGGGATAATCTAGCACTGTGGAATTCTGATATGGCTGATGATG 839
consensus_8223#1 TTATC-TCTACCGCGCGAANCAGCCNGAGACCCANTGAAGATACCACACT-CTGGTTGCC 300
* *** * * * ** * * * ** * * * * *** *
consensus_8223#0 CAGACGATATTAGGGAACGAACAGATACAACTGGTGCTAAAGGTGACCCTGCAGCGTGAT 899
consensus_8223#1 CT-ATAAAGGTGACCCCTGCACGTCCGTTGATTGTGAGGTTGTCTATANTATGGCCTGGT 359
* * * * * ** * *** * * * ** ** *
consensus_8223#0 GGAGGTGCTAATAGCTGGTAGAGTCGAAGCATAACAACAACAACAACAAGGGTGT-GGTG 958
consensus_8223#1 ANGAGTTCCGAAAGCCATTATA--CCANACCANACCANACCAAT--CAGGGTTGTTGGTG 415
** * * *** ** * * * * ** * * *** ** ** *** ****
consensus_8223#0 GGGTGCGGAAGGACTACCATTTACTCACTGTTAG-TGTTA-GGTTCTGTAGTGTAGGAGT 1016
consensus_8223#1 GGGTGCGGAAGGACTACCATTTACTCACTGTTAGCTGTTACGNTTCTGTAGTGTAGGAGT 475
********************************** ***** * *****************
consensus_8223#0 TGAGCTGCTGAGTAACCCTCGCTTGTAGTCTGGGCCTGATTCTTCGACTTCTTGAGCAAC 1076
consensus_8223#1 TGAGCTGCTGAGTAACCCTCGCTTGTAGTCTGGGCCTGATTCTTCGACTTCTTGAGCAAC 535
************************************************************
consensus_8223#0 ATCGTGTACTAAGCACTCGCTGATCGCTCTTTTGCAAGCATTGTTTTTTTTTGGGTTACT 1136
consensus_8223#1 ATCGTGTACTAAGCACTC-CTGATCGCTCTTTTGCAAGCATTGTTTTTTTTTGGGTTACT 594
****************** *****************************************
consensus_8223#0 CTTGATGATGATTAGGCAAAAGTTATCTGGTTCATCAAAAAAAAAAAAAAAAA 1189
consensus_8223#1 CTTGATGATGNTTAGGCAAA-GTTATCTGGTTCATCAAAA------------- 633
********** ********* *******************
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||