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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8225#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 1167 fasta sequence
[CTGTCGTGCGTGCGTGCCGGAGACGACGAGGCGAACGCACGCGACGGCGACCGCCGCCGCCGCCGCCGACGAGGGCCGAGAACGACGTCACCGGTTTTGCTTCTCCGGACGTATTGTGTTAGTGGACCATTAGTAGAGCTGATAGTTGAGAGAAAAGTCCTACAACAATGTTCTCCTTGTTCTATGGTCTATGGCAGCATGTCTTCAGCAAGGCAGAGTTCCATGTAGTTATCCTTGGAGTTCACAAGGCTGGGAAGACGACCTTGCTAGAAAAGGTGAAGTCAATCTATTTGAAAGAGGAAGGCCTTCCACATGATCGTATCGTTCCAACAGTTGGGCTTAATATTGGACGTATTGAAGATGCCAATGTAAAACTTGTTTTCTGGGATCTGGGAGGCCAGCCTGGCCTACGAACAATCTGGGAGAAATATTACGAAGAGGCACATGCTGTCATATATGTTATTGACTCTGCTGCTGCATCATCATTTGAAGATGCCAAATCTGCTCTGGAGAAAGTTCTTCATCACGAGGATCTGCAAGGAGTGCCTCTACTCATATTTGCAAACAAGCAGGAGTTACCAGCAGCTGTGACAGAGGAAGAGCTGGCTAGGCATCTTCACCTTAAAGGGTTAGACGAGAGGCCATATATGTTCCAGGCTGGATCTGCCTACGACGGGACGGGAATCAAAGCTGGTATTGACTGGTTGGTGGAAGAAATGGAAAGGAGTAAACGCACCGAGGTGCTGATGGCGCGTACAGAAACAGCTGAGAAGATTTAACACACCATAAGCCAGACCCCCTGTCACAGATGCATATGTCGTTTGAGGAGTATGGCTCCTATAAATCTCGCGAATATAACAAATTGGCATCCTCTTGCCTTCTCCAGGCTACGCGGTGAGAAGAAAAAATGTCCTTGGTTGTGCGGTTTCTTGCAGGCTTTGCAGCTGTACACTTGGGTAGGAAGCCTGCTGTTGTAACGACAGAGGCGGGGTATTCCTTGGTTTATTGATTCTCATAGGCTCATAGCACACATAAATGTACCTAAAGTCATGCGACTTTTTTCTTCATATTGAACGGAACAAGAACGACAATGTAGAGCACAGAGAAGTTTTGTACATCTGTGAGAAGAAAAAAAATGCA-TTTGTACTTTATCGTTCAAAAAAAAAA]
[+] EMBL AK099524 [CTGTCGTGCGTGCGTGCCGGAGACGACGAGGCGAACGCACGCGACGGCGACCGCCGCCGCCGCCGCCGACGAGGGCCGAGAACGACGTCACCGGTTTTGCTTCTCCGGACGTATTGTGTTAGTGGACCATTAGTAGAGCTGATAGTTGAGAGAAAAGTCCTACAACAATGTTCTCCTTGTTCTATGGTCTATGGCAGCATGTCTTCAGCAAGGCAGAGTTCCATGTAGTTATCCTTGGAGTTCACAAGGCTGGGAAGACGACCTTGCTAGAAAAGGTGAAGTCAATCTATTTGAAAGAGGAAGGCCTTCCACATGATCGTATCGTTCCAACAGTTGGGCTTAATATTGGACGTATTGAAGATGCCAATGTAAAACTTGTTTTCTGGGATCTGGGAGGCCAGCCTGGCCTACGAACAATCTGGGAGAAATATTACGAAGAGGCACATGCTGTCATATATGTTATTGACTCTGCTGCTGCATCATCATTTGAAGATGCCAAATCTGCTCTGGAGAAAGTTCTTCATCACGAGGATCTGCAAGGAGTGCCTCTACTCATATTTGCAAACAAGCAGGAGTTACCAGCAGCTGTGACAGAGGAAGAGCTGGCTAGGCATCTTCACCTTAAAGGGTTAGACGAGAGGCCATATATGTTCCAGGCTGGATCTGCCTACGACGGGACGGGAATCAAAGCTGGTATTGACTGGTTGGTGGAAGAAATGGAAAGGAGTAAACGCACCGAGGTGCTGATGGCGCGTACAGAAACAGCTGAGAAGATTTAACACACCATAAGCCAGACCCCCTGTCACAGATGCATATGTCGTTTGAGGAGTATGGCTCCTATAAATCTCGCGAATATAACAAATTGGCATCCTCTTGCCTTCTCCAGGCTACGCGGTGAGAAGAAAAAATGTCCTTGGTTGTGCGGTTTCTTGCAGGCTTTGCAGCTGTACACTTGGGTAGGAAGCCTGCTGTTGTAACGACAGAGGCGGGGTATTCCTTGGTTTATTGATTCTCATAGGCTCATAGCACACATAAATGTACCTAAAGTCATGCGACTTTTTTCTTCATATTGAACGGAACAAGAACGACAATGTAGAGCACAGAGAAGTTTTGTACATCTGTGAGAAGAAAAAAAATGCA T ]
[+] EMBL CB635657 [ ACGAGGCGAACGCACGCGACGGCGACCGCCGCCGCCGCCGCCGACGAGGGCCGAGAACGACGTCACCGGTTTTGCTTCTCCGGACGTATTGTGTTAGTGGACCATTAGTAGAGCTGATAGTTGAGAGAAAAGTCCTACAACGATGTTCTCCTTGTTCTATGGTCTATGGCAGCATGTCTTCAGCAAGGCAGAGTTCCATGTACTTATCCTTGGAGTTCACAAGGCTGGGAAGACGACCTTGCTAGAAAAGGTGAAGTCAATCTATTTGAAAGAGGAAGGCCTTCCACATGATCGTATCGTTCCAACAGTTGGGCTTAATATTGGACGTATTGAAGATGCCAATGTAAAACTTGTTTTCTGGGATCTGGGAGGCCAGCCTGGCCTACGAACAATCTGGGAGAAATATTACGAAGAGGCACATGCTGTCATATATGTTATTGACTCTGCTGCTGCATCATCATTTGAAGATGCCAAATCTGCTCTGGAGAAAGTTCTTCATCACGAGGATCTGCAAGGAGCGCCTCTACTCATATTTGCAAACAAGCAGGAGTTACCAGCAGCTGTGACAGAGGAAGAGCTGGCTAGGCATCTTCACCTTAAAGAGTTAGACGAGAGGCCATATATGTTCCAGGCTGGATCTGCCTACGACGGGACGGGAATCAAAGCTGGTATTGACTGGTTGGTGGAAGAAATGGAAAGGAGTAAACGCACCGAGGTGCTGATGGCGCGTACAGAAACAGCTGAGAAGATTTAACACACCATAAGCCAGACCCCCTGTCACAGATGCATATGTCGTTTGAGGAGTATGGCTC ]
[+] EMBL AF050675 [ ACGTATTGTGTTAGTGGACCATTAGTAGAGCTGATAGTTGAGAGAAAAGTCCTACAACAATGTTCTCCTTGTTCTATGGTCTATGGCAGCATGTCTTCAGCAAGGCAGAGTTCCATGTAGTTATCCTTGGAGTTCACAAGGCTGGGAAGACGACCTTGCTAGAAAAGGTGAAGTCAATCTATTTGAAAGAGAAAGGCCTTCCACATGATCGTATCGTTCCAACAGTTGGGCTTAATATTGGACGTATTGAAGATGCCAATGTTAAACTTGTTTTCTGGGATCTGGGAGGCCAGCCTGGCCTACGAACAATCTGGGAGAAATATTACGAAGAGGCACATGCTGTCCTATATGTTATTGACTCTGCTGCTGCATCATCATTTGAAGATGCCAAATCTGCTCTGGAGAAAGTTCTTCATCACGAAGATCTGCCAGGAGTGCCTCTACTCATATTTGCAAACAAGCAGGAGTTTCCACCAGCTGTGACAGAAGAAAAACTGGCTAGGCATCTTCCCCTTAAAGGGTTAGACGAGAGCCCATATATGTTCCAGGGTGGATCTGCCTACGACGGGACGGGAATCAAAGGTGGTATTGACTGGTTGGTGGAAGAAATGGAAAGGAGTAAACGCACCGAGGTGCTGATGGCGCGTACAGAAACAGCTGAGAAGATTTAACACACCATAAGCCAGACCCCCTGTCACAGATGCATATGTCGTTTGAGGAGTATGGCTCCTATAAATCTCGCGAATATAACAAATTGGCATCCTCTTGCCTTCTCCAGGCTACGCGGTGAGAAGAAAAAATGTCCTTGGTTGTGCGGTTTCTTGCAGGCTTTGCAGCTGTACACTTGGGTAGGAAGCCTGCTGTTGTAACGACAGAGGCGGGGTATTCCTTGGTTTATTGATTCTCATAGGCTCATAGCACACATAAATGTACCTAAAGTCATGCGACTTTTTTCTTCATATTGAACGGAACAAGAACGACAATGTAGAGCACAGAGAAGTTTTGTACATCTGTGAGAAGAAAAAAAATGCATTTTGTACTTTATCGTTCAAAAAAAAAA]
[-] EMBL CB635658 [ ATGCCAATGTAAAACTTGTTTTCTGGGATCTGGGAGGCCAGCCTGGCCTACGAACAATCTGGGAGAAATATTACGAAGAGGCACATGCTGTCATATATGTTATTGACTCTGCTGCTGCATCATCATTTGAAGATGCCAAATCTGCTCTGGAGAAAGTTCTTCATCACGAGGATCTGCAAGGAGCGCCTCTACTCATATTTGCAAACAAGCAGGAGTTACCAGCAGCTGTGACAGAGGAAGAGCTGGCTAGGCATCTTCACCTTAAAGAGTTAGACGAGAGGCCATATATGTTCCAGGCTGGATCTGCCTACGACGGGACGGGAATCAAAGCTGGTATTGACTGGTTGGTGGAAGAAATGGAAAGGAGTAAACGCACCGAGGTGCTGATGGCGCGTACAGAAACAGCTGAGAAGATTTAACACACCATAAGCCAGACCCCCTGTCACAGATGCATATGTCGTTTGAGGAGTATGGCTCCTATAAATCTCGCGAATATAACAAATTGGCATCCTCTTGCCTTCTCCAGGCTACGCGGTGAGAAGAAAAAATGTCCTTGGTTGTGCGGTTTCTTGCAGGCTTTGCAGCTGTACAATTGGGTAGGAAGCCTGCTGTTGTAACGACAGAGGCGGGGTATTCCTTGGTTTATTGATTCTCATAGGCTCATAGCACACATAAATGTACCTAAAGTCATGCGACTTTTTTCTTCATATTGAACGGAACAAGAACGACAATGTAGAGCACAGAGAAGTAAAGGACATCTATGAGAAGAAAAAAAATGCA TTTGTAaaatataga ]
consensusID : consensus_8225#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 663 fasta sequence
[CAAATCTGCTCTGGAGAAAGTTCTTCATGACGAGGATCTGCAAGGAGCGCCTCTGCTCATATTTCCAACCAAGCTGGAGTTACCAGCAGCTGTGACAGAGGAAGACCTGGCTAGGCATCTTCACCTTAAAAAGTTAGACGAGAGGCGATATATGTTCCAGGTTGGATTTGCCTAAGACGGGACGGGAATCAAAGCTGGTATTGACTGGTTGGTGAAAGAAATGGAAAGGAGTAATCGCACCGAGGTTCTGATGGCGCGTACATAACCAGCTGAGAAGATTTACCACACCTTAAGCCGGACCTCCTGTCAGAGAAGCATATGTCGTTTGAGGAGTATGGCTCCTTTAAATCTCGAGAATATAGCGAATTGGCATCCTCTTGCCTTGTACAGGCTACGCGGTGAGAAGAAAAAATGTCCTCGGTTGTTCGGTTTCTTCCAGGCTTTGGAACTGTTCAATTGGGTAGGAAACCTGCTGGTGTAACGAGAGAGGCGGGGTTTTCCTTGGTTTATTGATTATGATAGGCTCATAGCACACATAAATGTACCTAAAGTCATTTGACTTTTTTAATCATATCGAACGGAACAAGAAAGACAATGTAGAGCACAGTGAAGTTTAGTAAATCTCTGAGAAGAAAATAATTGCATTTTGTAAAAAAAAAAAAA]
[-] EMBL CA763216 [CAAATCTGCTCTGGAGAAAGTTCTTCATGACGAGGATCTGCAAGGAGCGCCTCTGCTCATATTTCCAACCAAGCTGGAGTTACCAGCAGCTGTGACAGAGGAAGACCTGGCTAGGCATCTTCACCTTAAAAAGTTAGACGAGAGGCGATATATGTTCCAGGTTGGATTTGCCTAAGACGGGACGGGAATCAAAGCTGGTATTGACTGGTTGGTGAAAGAAATGGAAAGGAGTAATCGCACCGAGGTTCTGATGGCGCGTACATAACCAGCTGAGAAGATTTACCACACCTTAAGCCGGACCTCCTGTCAGAGAAGCATATGTCGTTTGAGGAGTATGGCTCCTTTAAATCTCGAGAATATAGCGAATTGGCATCCTCTTGCCTTGTACAGGCTACGCGGTGAGAAGAAAAAATGTCCTCGGTTGTTCGGTTTCTTCCAGGCTTTGGAACTGTTCAATTGGGTAGGAAACCTGCTGGTGTAACGAGAGAGGCGGGGTTTTCCTTGGTTTATTGATTATGATAGGCTCATAGCACACATAAATGTACCTAAAGTCATTTGACTTTTTTAATCATATCGAACGGAACAAGAAAGACAATGTAGAGCACAGTGAAGTTTAGTAAATCTCTGAGAAGAAAATAATTGCATTTTGTAAAAAAAAAAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_8225#0 CTGTCGTGCGTGCGTGCCGGAGACGACGAGGCGAACGCACGCGACGGCGACCGCCGCCGC 60
consensus_8225#1 ------------------------------------------------------------
consensus_8225#0 CGCCGCCGACGAGGGCCGAGAACGACGTCACCGGTTTTGCTTCTCCGGACGTATTGTGTT 120
consensus_8225#1 ------------------------------------------------------------
consensus_8225#0 AGTGGACCATTAGTAGAGCTGATAGTTGAGAGAAAAGTCCTACAACAATGTTCTCCTTGT 180
consensus_8225#1 ------------------------------------------------------------
consensus_8225#0 TCTATGGTCTATGGCAGCATGTCTTCAGCAAGGCAGAGTTCCATGTAGTTATCCTTGGAG 240
consensus_8225#1 ------------------------------------------------------------
consensus_8225#0 TTCACAAGGCTGGGAAGACGACCTTGCTAGAAAAGGTGAAGTCAATCTATTTGAAAGAGG 300
consensus_8225#1 ------------------------------------------------------------
consensus_8225#0 AAGGCCTTCCACATGATCGTATCGTTCCAACAGTTGGGCTTAATATTGGACGTATTGAAG 360
consensus_8225#1 ------------------------------------------------------------
consensus_8225#0 ATGCCAATGTAAAACTTGTTTTCTGGGATCTGGGAGGCCAGCCTGGCCTACGAACAATCT 420
consensus_8225#1 ------------------------------------------------------------
consensus_8225#0 GGGAGAAATATTACGAAGAGGCACATGCTGTCATATATGTTATTGACTCTGCTGCTGCAT 480
consensus_8225#1 ------------------------------------------------------------
consensus_8225#0 CATCATTTGAAGATGCCAAATCTGCTCTGGAGAAAGTTCTTCATCACGAGGATCTGCAAG 540
consensus_8225#1 ----------------CAAATCTGCTCTGGAGAAAGTTCTTCATGACGAGGATCTGCAAG 44
**************************** ***************
consensus_8225#0 GAGTGCCTCTACTCATATTTGCAAACAAGCAGGAGTTACCAGCAGCTGTGACAGAGGAAG 600
consensus_8225#1 GAGCGCCTCTGCTCATATTTCCAACCAAGCTGGAGTTACCAGCAGCTGTGACAGAGGAAG 104
*** ****** ********* *** ***** *****************************
consensus_8225#0 AGCTGGCTAGGCATCTTCACCTTAAAGGGTTAGACGAGAGGCCATATATGTTCCAGGCTG 660
consensus_8225#1 ACCTGGCTAGGCATCTTCACCTTAAAAAGTTAGACGAGAGGCGATATATGTTCCAGGTTG 164
* ************************ ************** ************** **
consensus_8225#0 GATCTGCCTACGACGGGACGGGAATCAAAGCTGGTATTGACTGGTTGGTGGAAGAAATGG 720
consensus_8225#1 GATTTGCCTAAGACGGGACGGGAATCAAAGCTGGTATTGACTGGTTGGTGAAAGAAATGG 224
*** ****** *************************************** *********
consensus_8225#0 AAAGGAGTAAACGCACCGAGGTGCTGATGGCGCGTACAGAAACAGCTGAGAAGATTTAAC 780
consensus_8225#1 AAAGGAGTAATCGCACCGAGGTTCTGATGGCGCGTACATAACCAGCTGAGAAGATTTACC 284
********** *********** *************** ** **************** *
consensus_8225#0 ACACCATAAGCCAGACCCCCTGTCACAGATGCATATGTCGTTTGAGGAGTATGGCTCCTA 840
consensus_8225#1 ACACCTTAAGCCGGACCTCCTGTCAGAGAAGCATATGTCGTTTGAGGAGTATGGCTCCTT 344
***** ****** **** ******* *** *****************************
consensus_8225#0 TAAATCTCGCGAATATAACAAATTGGCATCCTCTTGCCTTCTCCAGGCTACGCGGTGAGA 900
consensus_8225#1 TAAATCTCGAGAATATAGCGAATTGGCATCCTCTTGCCTTGTACAGGCTACGCGGTGAGA 404
********* ******* * ******************** * *****************
consensus_8225#0 AGAAAAAATGTCCTTGGTTGTGCGGTTTCTTGCAGGCTTTGCAGCTGTACACTTGGGTAG 960
consensus_8225#1 AGAAAAAATGTCCTCGGTTGTTCGGTTTCTTCCAGGCTTTGGAACTGTTCAATTGGGTAG 464
************** ****** ********* ********* * **** ** ********
consensus_8225#0 GAAGCCTGCTGTTGTAACGACAGAGGCGGGGTATTCCTTGGTTTATTGATTCTCATAGGC 1020
consensus_8225#1 GAAACCTGCTGGTGTAACGAGAGAGGCGGGGTTTTCCTTGGTTTATTGATTATGATAGGC 524
*** ******* ******** *********** ****************** * ******
consensus_8225#0 TCATAGCACACATAAATGTACCTAAAGTCATGCGACTTTTTTCTTCATATTGAACGGAAC 1080
consensus_8225#1 TCATAGCACACATAAATGTACCTAAAGTCATTTGACTTTTTTAATCATATCGAACGGAAC 584
******************************* ********* ****** *********
consensus_8225#0 AAGAACGACAATGTAGAGCACAGAGAAGTTTTGTACATCTGTGAGAAGAAAAAAAATGCA 1140
consensus_8225#1 AAGAAAGACAATGTAGAGCACAGTGAAGTTTAGTAAATCTCTGAGAAGAAAATAATTGCA 644
***** ***************** ******* *** **** *********** ** ****
consensus_8225#0 TTTGTACTTTATCGTTCAAAAAAAAAA- 1167
consensus_8225#1 TTT---------TGTAAAAAAAAAAAAA 663
*** ** **********
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||