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Oryza sativa
cluster # 8229 cluster # 8229       Sequences # 5       consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_8229#0 length = 1091 sequences # 4  
 consensus_8229#1 length = 220 sequences # 1  
consensusID : consensus_8229#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 1091
fasta sequence 
                              [ACATAGATTCCTCATGCTCTTCTCACTCCCATCCATGTAGGCTTAGCTCCGCTAAAACCCTAGCAGGTTACATTCCCAGCCAGCGGCAGCACGCACGCGCCATGGAGGCTAGGCGTTGCCGGCGCCGCACCGCCAGCGCAGCAGCGGCGGCGGCGAGGAGGCGGCTGTGCAGCCTCCTCGCCCTCGCCGGCGACTACCTCAAGTACCTCCTCACGAAGCGGGGCCGGTTCCTCGGCAGGGTGGCCAGGAGGTCCCTCGCCGCCCTGCTCCTGTCATCCGGCGGCGGCGGCAAGCCATGCCTCGCCACGGCGCCGTGGCCGCCGTGCGCGCTGGCGGAGCGCGAGTTCTCGTGCAGCAACAGCCCCAGCCCGGCGTTCCTCGCGGCGAGGAGGCTGCGGTCACGGCTG-AAGCGCCGCGCGGGCGCCGCCTCCTGCTTCGGCGCGCTCCGGTCCCCCTGCGGCTGCGGGCCGTCGGCGACAGAGGCGGCGGACCAGGAGGAGGAGGAAGAAGACGAGGAGGTTGATCAGTACGGCGCGTGGGAGTGCGGCGGCGGGGAGCTGATCGACGTGGACTACAGGGCGGAGGAGTTCATCAACATGTTCTACGAGCAACTCAGGGCGCAGAGCTTCCACCCGCCCACTGTTCTCCAGTGCCGCTCGCCATGACCGGCCGGTGCCATGGACGTGCACGTGTTGACCAGAGCGAGCTAGCTCTATCCTCCTCTCTACTGCGTACGCGTGGGCGTCGTGTATTGTGTGGTTCCAACCTTCGAGGAGTCTTCACTTTTGAGCGTTGCGCTGTACCGGTGGTATCTAAGGTTAAGGTAAAGGTGTAGGTGGCTAACCCGCGAATCCATTTATAAATTAAATGTTTATTTATTTAATTTATAAGTAGGTTCCTGGATTAGCCACTTACACCCTCATTAATCTACGGTACTTACTTTCGTCTTCTTCTCATTCCTCTATGGCTCTCAGTAATATCCCTCCTCCTCGGTGTTGTAATTTGTAAGCTATTATTTACATGTGTAGAGTGTACGTCACCTGCGTCAGTATATATGAATAAAAGAGTAGCAATGGAGTTTGGGACAAAAA]

[+] EMBL AK102148             [ACATAGATTCCTCATGCTCTTCTCACTCCCATCCATGTAGGCTTAGCTCCGCTAAAACCCTAGCAGGTTACATTCCCAGCCAGCGGCAGCACGCACGCGCCATGGAGGCTAGGCGTTGCCGGCGCCGCACCGCCAGCGCAGCAGCGGCGGCGGCGAGGAGGCGGCTGTGCAGCCTCCTCGCCCTCGCCGGCGACTACCTCAAGTACCTCCTCACGAAGCGGGGCCGGTTCCTCGGCAGGGTGGCCAGGAGGTCCCTCGCCGCCCTGCTCCTGTCATCCGGCGGCGGCGGCAAGCCATGCCTCGCCACGGCGCCGTGGCCGCCGTGCGCGCTGGCGGAGCGCGAGTTCTCGTGCAGCAACAGCCCCAGCCCGGCGTTCCTCGCGGCGAGGAGGCTGCGGTCACGGCTG AAGCGCCGCGCGGGCGCCGCCTCCTGCTTCGGCGCGCTCCGGTCCCCCTGCGGCTGCGGGCCGTCGGCGACAGAGGCGGCGGACCAGGAGGAGGAGGAAGAAGACGAGGAGGTTGATCAGTACGGCGCGTGGGAGTGCGGCGGCGGGGAGCTGATCGACGTGGACTACAGGGCGGAGGAGTTCATCAACATGTTCTACGAGCAACTCAGGGCGCAGAGCTTCCACCCGCCCACTGTTCTCCAGTGCCGCTCGCCATGACCGGCCGGTGCCATGGACGTGCACGTGTTGACCAGAGCGAGCTAGCTCTATCCTCCTCTCTACTGCGTACGCGTGGGCGTCGTGTATTGTGTGGTTCCAACCTTCGAGGAGTCTTCACTTTTGAGCGTTGCGCTGTACCGGTGGTATCTAAGGTTAAGGTAAAGGTGTAGGTGGCTAACCCGCGAATCCATTTATAAATTAAATGTTTATTTATTTAATTTATAAGTAGGTTCCTGGATTAGCCACTTACACCCTCATTAATCTACGGTACTTACTTTCGTCTTCTTCTCATTCCTCTATGGCTCTCAGTAATATCCCTCCTCCTCGGTGTTGTAATTTGTAAGCTATTATTTACATGTGTAGAGTGTACGTCACCTGCGTCAGTATATATGAATAAAAGAGTAGCAAT                 ]
[+] EMBL AK107859             [             ATGCTCTTCTCACTCCCATCCATGTAGGCTTAGCTCCGCTAAAACCCTAGCAGGTTACATTCCCAGCCAGCGGCAGCACGCACGCGCCATGGAGGCTAGGCGTTGCCGGCGCCGCACCGCCAGCGCAGCAGCGGCGGCGGCGAGGAGGCGGCTGTGCAGCCTCCTCGCCCTCGCCGGCGACTACCTCAAGTACCTCCTCACGAAGCGGGGCCGGTTCCTCGGCAGGGTGGCCAGGAGGTCCCTCGCCGCCCTGCTCCTGTCATCCGGCGGCGGCGGCAAGCCATGCCTCGCCACGGCGCCGTGGCCGCCGTGCGCGCTGGCGGAGCGCGAGTTCTCGTGCAGCAACAGCCCCAGCCCGGCGTTCCTCGCGGCGAGGAGGCTGCGGTCACGGCTG AAGCGCCGCGCGGGCGCCGCCTCCTGCTTCGGCGCGCTCCGGTCCCCCTGCGGCTGCGGGCCGTCGGCGACAGAGGCGGCGGACCAGGAGGAGGAGGAAGAAGACGAGGAGGTTGATCAGTACGGCGCGTGGGAGTGCGGCGGCGGGGAGCTGATCGACGTGGACTACAGGGCGGAGGAGTTCATCAACATGTTCTACGAGCAACTCAGGGCGCAGAGCTTCCACCCGCCCACTGTTCTCCAGTGCCGCTCGCCATGACCGGCCGGTGCCATGGACGTGCACGTGTTGACCAGAGCGAGCTAGCTCTATCCTCCTCTCTACTGCGTACGCGTGGGCGTCGTGTATTGTGTGGTTCCAACCTTCGAGGAGTCTTCACTTTTGAGCGTTGCGCTGTACCGGTGGTATCTAAGGTTAAGGTAAAGGTGTAGGTGGCTAACCCGCGAATCCATTTATAGATTAAATGTTTATTTATTTAATTTATAAGTAGGTTCCTGGATTAGCCACTTACACCCTCATTAATCTACGGTACTTACTTTCGTCTTCTTCTCATTCCTCTATGGCTCTCAGTAATATCCCTCCTCCTCGGTGTTGTAATTTGTAAGCTATTATTTACATGTGTAGAGTGTACGTCACCTGCGTCAGTATATATGAATAAAAGAGTAGCAATGG               ]
[+] EMBL C27720               [                           CCCATCCATGTAGGCTTAGCTCCGCTAAAACCCTAGCAGGTTACATTCCCAGCCAGCGGCAGCACGCACGCGCCATGGAGGCTAGGCGTTGCCGGCGCCGCACCGCCAGCGCA NAGCGGCGGCGGCGAGGAGGCGGCTGTGCAGCCTCCTCG CCTCGCCGGCGACTACCTCAAGTACCTCCTCACGAAGCGGGGCCGGTTCCTCGGCAGGGTGGCCAGGAGGTCCCTCGCCGCCCTGCTCCTGTNATCCGGCGGCGGCGGCAAG CATGCCTNGCCACGGCGCCGTGGCCGACGTTCGCGCTG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        ]
[+] EMBL AU092638             [                                                                                                                                                                                                                                                                                                                                                                                                              TCACGGCTGAAAGCGCCGCGCGGGCGCCG CTCCTGCTTCGGCGCGCTCCGGTCCCCCTGCGGCTGCGGGCCGTCGGCGACAGAGGCGGCGGACCAGGAGGAGGAGGAAGAAGACGAGGAGGTTGATCAGTACGGCGCGTGGGAGTGCGGCGGCGGGGAGCTGATCGACGTGGACTACAGGGCGGAGGAGTTCATCAACATGTTCTACGAGCAACTCAGGGCGCAGAGCTTCCACCCGCCCACTGTTCTCCAGTGCCGCTCGCCATGACCGGCCGGTGCCATGGACGTGCACGTGTTGACCAGAGCGAGCTAGCTCTATCCTCCTCTCTA TGCGTACGCGTGGGCGTCGTGTATTGTGTGGTTCCAACCTTCGAGGAGTCTTCACTTTTGAGCGTTGCGCTGTACCGGTGGTATCTAAGGTTAAGGTAAAGGTGTAGGTGGCTAACCCGCGAATCCATTTATAAATTAAATGTTTATTTATTTAATTTATAAGTAGGTTCCTGGATTAGCCACTTACACCCTCATTAATCTACGGTACTTACTTTCGTCTTCTTCTCATTCCTCTATGGCTCTCAGTAATATCCCTCCTCCTCGGTGTTGTAATTTGTAAGCTATTATTTACATGTGTAGAGTGTACGTCACCTGCGTCAGTATATATGAATAAAAGAGTAGCAATGGAGTTTGGGACAAAAA]




>consensus_8229#0
ACATAGATTCCTCATGCTCTTCTCACTCCCATCCATGTAGGCTTAGCTCCGCTAAAACCC
TAGCAGGTTACATTCCCAGCCAGCGGCAGCACGCACGCGCCATGGAGGCTAGGCGTTGCC
GGCGCCGCACCGCCAGCGCAGCAGCGGCGGCGGCGAGGAGGCGGCTGTGCAGCCTCCTCG
CCCTCGCCGGCGACTACCTCAAGTACCTCCTCACGAAGCGGGGCCGGTTCCTCGGCAGGG
TGGCCAGGAGGTCCCTCGCCGCCCTGCTCCTGTCATCCGGCGGCGGCGGCAAGCCATGCC
TCGCCACGGCGCCGTGGCCGCCGTGCGCGCTGGCGGAGCGCGAGTTCTCGTGCAGCAACA
GCCCCAGCCCGGCGTTCCTCGCGGCGAGGAGGCTGCGGTCACGGCTGAAGCGCCGCGCGG
GCGCCGCCTCCTGCTTCGGCGCGCTCCGGTCCCCCTGCGGCTGCGGGCCGTCGGCGACAG
AGGCGGCGGACCAGGAGGAGGAGGAAGAAGACGAGGAGGTTGATCAGTACGGCGCGTGGG
AGTGCGGCGGCGGGGAGCTGATCGACGTGGACTACAGGGCGGAGGAGTTCATCAACATGT
TCTACGAGCAACTCAGGGCGCAGAGCTTCCACCCGCCCACTGTTCTCCAGTGCCGCTCGC
CATGACCGGCCGGTGCCATGGACGTGCACGTGTTGACCAGAGCGAGCTAGCTCTATCCTC
CTCTCTACTGCGTACGCGTGGGCGTCGTGTATTGTGTGGTTCCAACCTTCGAGGAGTCTT
CACTTTTGAGCGTTGCGCTGTACCGGTGGTATCTAAGGTTAAGGTAAAGGTGTAGGTGGC
TAACCCGCGAATCCATTTATAAATTAAATGTTTATTTATTTAATTTATAAGTAGGTTCCT
GGATTAGCCACTTACACCCTCATTAATCTACGGTACTTACTTTCGTCTTCTTCTCATTCC
TCTATGGCTCTCAGTAATATCCCTCCTCCTCGGTGTTGTAATTTGTAAGCTATTATTTAC
ATGTGTAGAGTGTACGTCACCTGCGTCAGTATATATGAATAAAAGAGTAGCAATGGAGTT
TGGGACAAAAA

consensusID : consensus_8229#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 220
fasta sequence 
                              [CCGCTAAAACCCTAGCAGGTTACATTCCCAGCCAGCGGCAGCACGNACGCGCCATGGAGGCTAGGCGTTGNCGNCGNCGNACCGNCAGCGNAGAGCGGCGGCGNCGAGGAGGCGGCTGTGCAGNCTCCTCGCCTTCGCCGGCGACTACCTCAAGTACCTCCTCACGAAGCGGGGNCGNTTCCTCGGCAGTGTGGCCAGGAGGTCCCTCGTCGNCCTGTTC]

[+] EMBL OS11322A             [CCGCTAAAACCCTAGCAGGTTACATTCCCAGCCAGCGGCAGCACGNACGCGCCATGGAGGCTAGGCGTTGNCGNCGNCGNACCGNCAGCGNAGAGCGGCGGCGNCGAGGAGGCGGCTGTGCAGNCTCCTCGCCTTCGCCGGCGACTACCTCAAGTACCTCCTCACGAAGCGGGGNCGNTTCCTCGGCAGTGTGGCCAGGAGGTCCCTCGTCGNCCTGTTC]




>consensus_8229#1
CCGCTAAAACCCTAGCAGGTTACATTCCCAGCCAGCGGCAGCACGNACGCGCCATGGAGG
CTAGGCGTTGNCGNCGNCGNACCGNCAGCGNAGAGCGGCGGCGNCGAGGAGGCGGCTGTG
CAGNCTCCTCGCCTTCGCCGGCGACTACCTCAAGTACCTCCTCACGAAGCGGGGNCGNTT
CCTCGGCAGTGTGGCCAGGAGGTCCCTCGTCGNCCTGTTC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_8229#0      ACATAGATTCCTCATGCTCTTCTCACTCCCATCCATGTAGGCTTAGCTCCGCTAAAACCC 60
consensus_8229#1      ------------------------------------------------CCGCTAAAACCC 12
                                                                      ************

consensus_8229#0      TAGCAGGTTACATTCCCAGCCAGCGGCAGCACGCACGCGCCATGGAGGCTAGGCGTTGCC 120
consensus_8229#1      TAGCAGGTTACATTCCCAGCCAGCGGCAGCACGNACGCGCCATGGAGGCTAGGCGTTGNC 72
                      ********************************* ************************ *

consensus_8229#0      GGCGCCGCACCGCCAGCGCAGCAGCGGCGGCGGCGAGGAGGCGGCTGTGCAGCCTCCTCG 180
consensus_8229#1      GNCGNCGNACCGNCAGCGNAG-AGCGGCGGCGNCGAGGAGGCGGCTGTGCAGNCTCCTCG 131
                      * ** ** **** ***** ** ********** ******************* *******

consensus_8229#0      CCCTCGCCGGCGACTACCTCAAGTACCTCCTCACGAAGCGGGGCCGGTTCCTCGGCAGGG 240
consensus_8229#1      CCTTCGCCGGCGACTACCTCAAGTACCTCCTCACGAAGCGGGGNCGNTTCCTCGGCAGTG 191
                      ** **************************************** ** *********** *

consensus_8229#0      TGGCCAGGAGGTCCCTCGCCGCCCTGCTCCTGTCATCCGGCGGCGGCGGCAAGCCATGCC 300
consensus_8229#1      TGGCCAGGAGGTCCCTCGTCGNCCTGTTC------------------------------- 220
                      ****************** ** **** **                               

consensus_8229#0      TCGCCACGGCGCCGTGGCCGCCGTGCGCGCTGGCGGAGCGCGAGTTCTCGTGCAGCAACA 360
consensus_8229#1      ------------------------------------------------------------
                                                                                  

consensus_8229#0      GCCCCAGCCCGGCGTTCCTCGCGGCGAGGAGGCTGCGGTCACGGCTGAAGCGCCGCGCGG 420
consensus_8229#1      ------------------------------------------------------------
                                                                                  

consensus_8229#0      GCGCCGCCTCCTGCTTCGGCGCGCTCCGGTCCCCCTGCGGCTGCGGGCCGTCGGCGACAG 480
consensus_8229#1      ------------------------------------------------------------
                                                                                  

consensus_8229#0      AGGCGGCGGACCAGGAGGAGGAGGAAGAAGACGAGGAGGTTGATCAGTACGGCGCGTGGG 540
consensus_8229#1      ------------------------------------------------------------
                                                                                  

consensus_8229#0      AGTGCGGCGGCGGGGAGCTGATCGACGTGGACTACAGGGCGGAGGAGTTCATCAACATGT 600
consensus_8229#1      ------------------------------------------------------------
                                                                                  

consensus_8229#0      TCTACGAGCAACTCAGGGCGCAGAGCTTCCACCCGCCCACTGTTCTCCAGTGCCGCTCGC 660
consensus_8229#1      ------------------------------------------------------------
                                                                                  

consensus_8229#0      CATGACCGGCCGGTGCCATGGACGTGCACGTGTTGACCAGAGCGAGCTAGCTCTATCCTC 720
consensus_8229#1      ------------------------------------------------------------
                                                                                  

consensus_8229#0      CTCTCTACTGCGTACGCGTGGGCGTCGTGTATTGTGTGGTTCCAACCTTCGAGGAGTCTT 780
consensus_8229#1      ------------------------------------------------------------
                                                                                  

consensus_8229#0      CACTTTTGAGCGTTGCGCTGTACCGGTGGTATCTAAGGTTAAGGTAAAGGTGTAGGTGGC 840
consensus_8229#1      ------------------------------------------------------------
                                                                                  

consensus_8229#0      TAACCCGCGAATCCATTTATAAATTAAATGTTTATTTATTTAATTTATAAGTAGGTTCCT 900
consensus_8229#1      ------------------------------------------------------------
                                                                                  

consensus_8229#0      GGATTAGCCACTTACACCCTCATTAATCTACGGTACTTACTTTCGTCTTCTTCTCATTCC 960
consensus_8229#1      ------------------------------------------------------------
                                                                                  

consensus_8229#0      TCTATGGCTCTCAGTAATATCCCTCCTCCTCGGTGTTGTAATTTGTAAGCTATTATTTAC 1020
consensus_8229#1      ------------------------------------------------------------
                                                                                  

consensus_8229#0      ATGTGTAGAGTGTACGTCACCTGCGTCAGTATATATGAATAAAAGAGTAGCAATGGAGTT 1080
consensus_8229#1      ------------------------------------------------------------
                                                                                  

consensus_8229#0      TGGGACAAAAA 1091
consensus_8229#1      -----------


Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)