These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8234#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 346 fasta sequence [ACGTCATGACAGTGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAAACCGAAAAAAAATTCCCTACAAATTTCCCCTCAAATGATCCAAATCCCCAGGGGCCCCGACAAGCGTTCAATTTTGCATGCAGTGGGGTCATATCACAAAGGTTTTAGGGCCAGGAATGTTTTCATGGGTGGCCAATCGATCGATGATCATTTTCAAATCATCCCCTTTTCCAAAAAACGTTGGATCCCCACTTGTACTACTCCTTCAACCCCATGTCAGGGTCCAAGGGCAAATTCCGGGCCGTTAAATT] [+] EMBL CF336104 [ACGTCATGACAGTGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAAACCGAAAAAAAATTCCCTACAAATTTCCCCTCAAATGATCCAAATCCCCAGGGGCCCCGACAAGCGTTCAATTTTGCATGCAGTGGGGTCATATCACAAAGGTTTTAGGGCCAGGAATGTTTTCATGGGTGGCCAATCGATCGATGATCATTTTCAAATCATCCCCTTTTCCAAAAAACGTTGGATCCCCACTTGTACTACTCCTTCAACCCCATGTCAGGGTCCAAGGGCAAATTCCGGGCCGTTAAATT] [+] EMBL CF298030 [ TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT AAAAAAAATTCCCTACAAATCTCCCCTCAAATGATACAAATCCCCAGGGGGCCCCACAAGCGTTCAATTTTGCCTGCCGTTGGGTCATATCACAAAGGTTTTAGGGCCAGGAATGTTTTCATGGGTGGCCAATCGATCGATGATCATTATCAAATCATCCCCTTTTCCAAAAAACGTTGGATCCCCACTTGTACTACTCCTTCAATCCat ] consensusID : consensus_8234#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 284 fasta sequence [TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAAAAATCAAAGGGGAATCCACCAATCGAAAAAAAATTCCCTCCAAATCTCCCCTCAAATGATACAAATCCCCAGGGGGCCCCACAAGCGTTCAATTTTGCCTGCCGTGGGGTCATATCACAAAGGTTTTAGGGACAGGAATGTTTTCATGGGTGGCCCATCGATCGATGATCATTATCAAATCATCCCCTTTTCCAAAAAACGTTGGATCCCCCCTTGTCCTACTCCTTCAACCCAT] [+] EMBL CF335078 [TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAAAAATCAAAGGGGAATCCACCAATCGAAAAAAAATTCCCTCCAAATCTCCCCTCAAATGATACAAATCCCCAGGGGGCCCCACAAGCGTTCAATTTTGCCTGCCGTGGGGTCATATCACAAAGGTTTTAGGGACAGGAATGTTTTCATGGGTGGCCCATCGATCGATGATCATTATCAAATCATCCCCTTTTCCAAAAAACGTTGGATCCCCCCTTGTCCTACTCCTTCAACCCAT] consensusID : consensus_8234#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 282 fasta sequence [TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAAAAGGCCTGATTAAAAATCAAAGGGGGATCCCCCAATCGAAAAAAAATTCCCTCCAAATCTCCCCTCAAATGATACAAATCCCCAGGGGGCCCCACAAGCGTTCAATTTTGCCTGCCGTTGGGTCATTTCACAAAGGTTTTAGGTCCAGGAATGTTTTCATGGGTGGCCAATCGATCGATGATCTTTATCAAATCTTCCCCCTTTCCAAAAAACGTTGGATCCCCACTTGTC] [+] EMBL CF334083 [TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAAAAGGCCTGATTAAAAATCAAAGGGGGATCCCCCAATCGAAAAAAAATTCCCTCCAAATCTCCCCTCAAATGATACAAATCCCCAGGGGGCCCCACAAGCGTTCAATTTTGCCTGCCGTTGGGTCATTTCACAAAGGTTTTAGGTCCAGGAATGTTTTCATGGGTGGCCAATCGATCGATGATCTTTATCAAATCTTCCCCCTTTCCAAAAAACGTTGGATCCCCACTTGTC] consensusID : consensus_8234#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 247 fasta sequence [TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAACACAGGGACCCCAACAAGCGTTCAATTATGCATGCAGTTGGGTCATATCAAAAAGGTTTTAGGGACAGGAATGTTTTCATGGGTGGCCAATCGATCGATGATCATTTTCAAATCATCCCCTTTTCCAAAAAACGTTGGATCCCCACTTGTACTACTCCTTCAACCCATGTCAGGGCCCAAGGGCAAATTC] [+] EMBL CF302809 [TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAACACAGGGACCCCAACAAGCGTTCAATTATGCATGCAGTTGGGTCATATCAAAAAGGTTTTAGGGACAGGAATGTTTTCATGGGTGGCCAATCGATCGATGATCATTTTCAAATCATCCCCTTTTCCAAAAAACGTTGGATCCCCACTTGTACTACTCCTTCAACCCATGTCAGGGCCCAAGGGCAAATTC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_8234#0 ACGTCATGACAGTGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTCTTTTTTTTTT 60 consensus_8234#3 --------------------------------------TTTTTTTTTTTTTTTTTTTTTT 22 consensus_8234#1 --------------------------------------TTTTTTTTTTTTTTTTTTTTTT 22 consensus_8234#2 --------------------------------------TTTTTTTTTTTTTTTTTTTTTT 22 *********** ********** consensus_8234#0 TTTTTTTTTTTTTTTTTTTTTTTTTTT-------TTTTTTAAA----------------- 96 consensus_8234#3 TTTTTTTTTTTTTTTTTTTTTTTTTTT-------TTTTTTAA------------------ 57 consensus_8234#1 TTTTTTTTTTTTTTTTTTTTTTTTTAA-------AAATCAAAGGGGAATCCACCAA---- 71 consensus_8234#2 TTTTTTTTTTTTTTTTTTTTTTTTTTTAAAAGGCCTGATTAAAAATCAAAGGGGGATCCC 82 ************************* ** consensus_8234#0 ----CCGAAAAAAAATTCCCTACAAATTTCCCCTCAAATGATCCAAATCCCCAGGGGCCC 152 consensus_8234#3 -------------------------------------------------CACAGGGACCC 68 consensus_8234#1 ----TCGAAAAAAAATTCCCTCCAAATCTCCCCTCAAATGATACAAATCCCCAGGGGGCC 127 consensus_8234#2 CCAATCGAAAAAAAATTCCCTCCAAATCTCCCCTCAAATGATACAAATCCCCAGGGGGCC 142 * ***** ** consensus_8234#0 CGACAAGCGTTCAATTTTGCATGCAGTGGGGTCATATCACAAAGGTTTTAGGGCCAGGAA 212 consensus_8234#3 CAACAAGCGTTCAATTATGCATGCAGTTGGGTCATATCAAAAAGGTTTTAGGGACAGGAA 128 consensus_8234#1 CCACAAGCGTTCAATTTTGCCTGCCGTGGGGTCATATCACAAAGGTTTTAGGGACAGGAA 187 consensus_8234#2 CCACAAGCGTTCAATTTTGCCTGCCGTTGGGTCATTTCACAAAGGTTTTAGGTCCAGGAA 202 * ************** *** *** ** ******* *** ************ ****** consensus_8234#0 TGTTTTCATGGGTGGCCAATCGATCGATGATCATTTTCAAATCATCCCCTTTTCCAAAAA 272 consensus_8234#3 TGTTTTCATGGGTGGCCAATCGATCGATGATCATTTTCAAATCATCCCCTTTTCCAAAAA 188 consensus_8234#1 TGTTTTCATGGGTGGCCCATCGATCGATGATCATTATCAAATCATCCCCTTTTCCAAAAA 247 consensus_8234#2 TGTTTTCATGGGTGGCCAATCGATCGATGATCTTTATCAAATCTTCCCCCTTTCCAAAAA 262 ***************** ************** ** ******* ***** ********** consensus_8234#0 ACGTTGGATCCCCACTTGTACTACTCCTTCAACCCCATGTCAGGGTCCAAGGGCAAATTC 332 consensus_8234#3 ACGTTGGATCCCCACTTGTACTACTCCTTCAACCC-ATGTCAGGGCCCAAGGGCAAATTC 247 consensus_8234#1 ACGTTGGATCCCCCCTTGTCCTACTCCTTCAACCC-AT---------------------- 284 consensus_8234#2 ACGTTGGATCCCCACTTGTC---------------------------------------- 282 ************* ***** consensus_8234#0 CGGGCCGTTAAATT 346 consensus_8234#3 -------------- consensus_8234#1 -------------- consensus_8234#2 -------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||