These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_824#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1648 fasta sequence [TCTCGCGTCGATCCAAACAAGCTCCAAAAACATCAAAAACCCCACGTACATTTCTTTACTCGCCCGGAGAAGCTACCGCGCGCTTGCTACCTCTCGCGTCTCCGTCTCTGCGTTGCATTGCATTGCATTGCTCGTTCTGTCATCGGATCCGAGTCTGGGATGGCGGCAATGGCGGGAGGGAGTAAGCCGCTGAGGCTCAAGGACCTCCTGGAGCTGGACTGCGAGTCCTGCAGCGCCGCTGGCTTCCGCTGCTACCCTCGCCGCCTCTGCGTCGCCGGCGGCGCGGCTGAGGCGGCGGCGCCGCCAATGCGGCACCGCCTCGTCGCCGACCGGTCGTCGTCCGCAATGCGGCGGCCCAAGCTGTCCAGCCTCTCGAAGAGCCTGTCCCGGCGGCTCAGGGGAGGCTTCTGGAGGCGGCGCGAGGAAGAAGACGAGGAAGCCGCCGCCGCCGCCGCGGCGCCGCCGGCGACGGCGAGCTCCACCGCCCCCGCCGTGGCCAGCTGCTGCAGCTCCAGCTCCGACTCCGAGACGTCCGAGTCCAGCAATTCCACAGGCGGGAGGAAGTCGCGCTCCCACTCCGACTACTCAGAAATCTCGTCAGCCAGCTCCGACGACAGCCTCCACGCCGCCGGCGAGCCCTCCACCACCGGAGCCGACCACGAGGTGATGAAGAGGGGGTCCAAGGAGGAGGATGAGGAGGAGGAGGCTGACGACAAGGAGCAGCTCAGTCCGGTGGGCGTCATGGACTTCCCCTTCGACGAAGACGACGACGACGCCGCCGCCGTCGACGAGGACGAGAGGGTCGCCGCCGGCGCGTGCTCGTTCTCTTTCAGCGACAGCCTCGCCCAGCTCCAGAGGAGAAAGATGCAACTGCAGCCCAAGATCCGACGGCTCGGGAGCATGGCGGAGCTCAGCGGCGTGGATCTCGAGGCACGCTTCGCCGCCTCGGAGTCCGACCGCCTTGCCGGCATCGTCCCAGTACAGCACCAGTGCATTACCGACGACGTAGCGGCGGCGCCGCCACGACACGACGATCATCGGAACGACGGCGTCTCCCAAAAAGATCCCGACGACGACGAGGACAGCCTCCTAGACCTACTGGCGGACACCGTGTCGGTCGGCGTGGTGGATGACGTCACCGAGAGGCTCCTCCTCGACTTCTTCGTCGAGGCGAAGTGCAGCTCCAGAAATATTGAGTTGCATGCACCGACCAGTCTGTTACGAGAGAGGAGACGGCGAGAGAACGGCGAAACGATGAGACTTGCCAAGGCCTGGCTTGAGGGCACGGGAACACCGTGGACGTTGAACGACGTGCTGTACCACGGCGAGGATGGCATGGCGGAGATGGAGCGGAGCCGGCGGTGGCGGCCATGGCGATGGACGAGCTGTTGCACGAGCTGGTGAGTGACCTGATTGCGTTGCCGAAGTAGTTCTTTGTTTGGATGTCAAAGTTGTCAAATCGAGTGTAATGTAAACGTGAGATAGAACAGATTCAGTGAAGGTTGATATAGGGGGGTAGTGAGTTAGGGGCAGTGGAATAAAGCAGATGCATCTGTATATAGTTTTGTCAGAGTGGCAATGGAAACAAGAAGATTACTGTTCTGTTTGGATGTAAATGTACACTCTACAGGTCATCAACCTAAGGCCA] [+] EMBL AK106233 [TCTCGCGTCGATCCAAACAAGCTCCAAAAACATCAAAAACCCCACGTACATTTCTTTACTCGCCCGGAGAAGCTACCGCGCGCTTGCTACCTCTCGCGTCTCCGTCTCTGCGTTGCATTGCATTGCATTGCTCGTTCTGTCATCGGATCCGAGTCTGGGATGGCGGCAATGGCGGGAGGGAGTAAGCCGCTGAGGCTCAAGGACCTCCTGGAGCTGGACTGCGAGTCCTGCAGCGCCGCTGGCTTCCGCTGCTACCCTCGCCGCCTCTGCGTCGCCGGCGGCGCGGCTGAGGCGGCGGCGCCGCCAATGCGGCACCGCCTCGTCGCCGACCGGTCGTCGTCCGCAATGCGGCGGCCCAAGCTGTCCAGCCTCTCGAAGAGCCTGTCCCGGCGGCTCAGGGGAGGCTTCTGGAGGCGGCGCGAGGAAGAAGACGAGGAAGCCGCCGCCGCCGCCGCGGCGCCGCCGGCGACGGCGAGCTCCACCGCCCCCGCCGTGGCCAGCTGCTGCAGCTCCAGCTCCGACTCCGAGACGTCCGAGTCCAGCAATTCCACAGGCGGGAGGAAGTCGCGCTCCCACTCCGACTACTCAGAAATCTCGTCAGCCAGCTCCGACGACAGCCTCCACGCCGCCGGCGAGCCCTCCACCACCGGAGCCGACCACGAGGTGATGAAGAGGGGGTCCAAGGAGGAGGATGAGGAGGAGGAGGCTGACGACAAGGAGCAGCTCAGTCCGGTGGGCGTCATGGACTTCCCCTTCGACGAAGACGACGACGACGCCGCCGCCGTCGACGAGGACGAGAGGGTCGCCGCCGGCGCGTGCTCGTTCTCTTTCAGCGACAGCCTCGCCCAGCTCCAGAGGAGAAAGATGCAACTGCAGCCCAAGATCCGACGGCTCGGGAGCATGGCGGAGCTCAGCGGCGTGGATCTCGAGGCACGCTTCGCCGCCTCGGAGTCCGACCGCCTTGCCGGCATCGTCCCAGTACAGCACCAGTGCATTACCGACGACGTAGCGGCGGCGCCGCCACGACACGACGATCATCGGAACGACGGCGTCTCCCAAAAAGATCCCGACGACGACGAGGACAGCCTCCTAGACCTACTGGCGGACACCGTGTCGGTCGGCGTGGTGGATGACGTCACCGAGAGGCTCCTCCTCGACTTCTTCGTCGAGGCGAAGTGCAGCTCCAGAAATATTGAGTTGCATGCACCGACCAGTCTGTTACGAGAGAGGAGACGGCGAGAGAACGGCGAAACGATGAGACTTGCCAAGGCCTGGCTTGAGGGCACGGGAACACCGTGGACGTTGAACGACGTGCTGTACCACGGCGAGGATGGCATGGCGGAGATGGAGCGGAGCCGGCGGTGGCGGCCATGGCGATGGACGAGCTGTTGCACGAGCTGGTGAGTGACCTGATTGCGTTGCCGAAGTAGTTCTTTGTTTGGATGTCAAAGTTGTCAAATCGAGTGTAATGTAAACGTGAGATAGAACAGATTCAGTGAAGGTTGATATAGGGGGGTAGTGAGTTAGGGGCAGTGGAATAAAGCAGATGCATCTGTATATAGTTTTGTCAGAGTGGCAATGGAAACAAGAAGATTACTGTTCTGTTTGGATGTAAATGTACACTCTACAGGTCATCAACCTAAGGCCA] consensusID : consensus_824#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 681 fasta sequence [CCAGTGCATTACCGACGANGTAGGGGGGGNGCCGCCACGACACGACGATTATGGGAACGANGGCGTCTCCCAAAAAGATCCCGACGACGACGAGGACAGCCTCCTAGATCTACTGGCGGACACCGTGTCGGTTGGCGTGGTGGATGACGTCACCGAGAGGCTCCTCCTCGACTTTTTTGTCGAGGCGAAGTGCAGCTCCAGAAATANTGAGTTGCATGCACCGACCAGTCTGTTACGAGAGAGGAGACGGCGAGAGAACGGCGAAACGATGAGACTTGCCAAGGCCTGGCTTGAGGGCACGGGAACACCGTGGACGTTGAACGACGTGCTGTACCACGGCGAGGATGTCATGGCGGAGATGGAGCGGAGCCGGCGGTGGATGCACGCCGGCGAGGAGGAGCGCGAGGCCGGCGTGGTGGTGGCGGCCATGGCGATGGACGAGCTGTTGCACGAGCTGGTGAGTGACCTGATTGCGTTGCCGAAGTAGTTCTTTGTTTGGATGTCAAAGTTGTCAAATCGAGTGTAATGTAAACGTGAGATAGAACAGATTCAGTGAAGGTTGATATAGGGGGGTAGTGAGTTAGGGGCAGTGGAATAAAGCAGATGCATCTGTATATAGTTTTGTCAGAGTAGCAATGGAAACAAGATTACTGTTCTGTTTGGATGTAAAAAAAAAAAAAA] [-] EMBL CA759115 [CCAGTGCATTACCGACGANGTAGGGGGGGNGCCGCCACGACACGACGATTATGGGAACGANGGCGTCTCCCAAAAAGATCCCGACGACGACGAGGACAGCCTCCTAGATCTACTGGCGGACACCGTGTCGGTTGGCGTGGTGGATGACGTCACCGAGAGGCTCCTCCTCGACTTTTTTGTCGAGGCGAAGTGCAGCTCCAGAAATANTGAGTTGCATGCACCGACCAGTCTGTTACGAGAGAGGAGACGGCGAGAGAACGGCGAAACGATGAGACTTGCCAAGGCCTGGCTTGAGGGCACGGGAACACCGTGGACGTTGAACGACGTGCTGTACCACGGCGAGGATGTCATGGCGGAGATGGAGCGGAGCCGGCGGTGGATGCACGCCGGCGAGGAGGAGCGCGAGGCCGGCGTGGTGGTGGCGGCCATGGCGATGGACGAGCTGTTGCACGAGCTGGTGAGTGACCTGATTGCGTTGCCGAAGTAGTTCTTTGTTTGGATGTCAAAGTTGTCAAATCGAGTGTAATGTAAACGTGAGATAGAACAGATTCAGTGAAGGTTGATATAGGGGGGTAGTGAGTTAGGGGCAGTGGAATAAAGCAGATGCATCTGTATATAGTTTTGTCAGAGTAGCAATGGAAACAAGATTACTGTTCTGTTTGGATGTAAAAAAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_824#0 TCTCGCGTCGATCCAAACAAGCTCCAAAAACATCAAAAACCCCACGTACATTTCTTTACT 60 consensus_824#1 ------------------------------------------------------------ consensus_824#0 CGCCCGGAGAAGCTACCGCGCGCTTGCTACCTCTCGCGTCTCCGTCTCTGCGTTGCATTG 120 consensus_824#1 ------------------------------------------------------------ consensus_824#0 CATTGCATTGCTCGTTCTGTCATCGGATCCGAGTCTGGGATGGCGGCAATGGCGGGAGGG 180 consensus_824#1 ------------------------------------------------------------ consensus_824#0 AGTAAGCCGCTGAGGCTCAAGGACCTCCTGGAGCTGGACTGCGAGTCCTGCAGCGCCGCT 240 consensus_824#1 ------------------------------------------------------------ consensus_824#0 GGCTTCCGCTGCTACCCTCGCCGCCTCTGCGTCGCCGGCGGCGCGGCTGAGGCGGCGGCG 300 consensus_824#1 ------------------------------------------------------------ consensus_824#0 CCGCCAATGCGGCACCGCCTCGTCGCCGACCGGTCGTCGTCCGCAATGCGGCGGCCCAAG 360 consensus_824#1 ------------------------------------------------------------ consensus_824#0 CTGTCCAGCCTCTCGAAGAGCCTGTCCCGGCGGCTCAGGGGAGGCTTCTGGAGGCGGCGC 420 consensus_824#1 ------------------------------------------------------------ consensus_824#0 GAGGAAGAAGACGAGGAAGCCGCCGCCGCCGCCGCGGCGCCGCCGGCGACGGCGAGCTCC 480 consensus_824#1 ------------------------------------------------------------ consensus_824#0 ACCGCCCCCGCCGTGGCCAGCTGCTGCAGCTCCAGCTCCGACTCCGAGACGTCCGAGTCC 540 consensus_824#1 ------------------------------------------------------------ consensus_824#0 AGCAATTCCACAGGCGGGAGGAAGTCGCGCTCCCACTCCGACTACTCAGAAATCTCGTCA 600 consensus_824#1 ------------------------------------------------------------ consensus_824#0 GCCAGCTCCGACGACAGCCTCCACGCCGCCGGCGAGCCCTCCACCACCGGAGCCGACCAC 660 consensus_824#1 ------------------------------------------------------------ consensus_824#0 GAGGTGATGAAGAGGGGGTCCAAGGAGGAGGATGAGGAGGAGGAGGCTGACGACAAGGAG 720 consensus_824#1 ------------------------------------------------------------ consensus_824#0 CAGCTCAGTCCGGTGGGCGTCATGGACTTCCCCTTCGACGAAGACGACGACGACGCCGCC 780 consensus_824#1 ------------------------------------------------------------ consensus_824#0 GCCGTCGACGAGGACGAGAGGGTCGCCGCCGGCGCGTGCTCGTTCTCTTTCAGCGACAGC 840 consensus_824#1 ------------------------------------------------------------ consensus_824#0 CTCGCCCAGCTCCAGAGGAGAAAGATGCAACTGCAGCCCAAGATCCGACGGCTCGGGAGC 900 consensus_824#1 ------------------------------------------------------------ consensus_824#0 ATGGCGGAGCTCAGCGGCGTGGATCTCGAGGCACGCTTCGCCGCCTCGGAGTCCGACCGC 960 consensus_824#1 ------------------------------------------------------------ consensus_824#0 CTTGCCGGCATCGTCCCAGTACAGCACCAGTGCATTACCGACGACGTAGCGGCGGCGCCG 1020 consensus_824#1 --------------------------CCAGTGCATTACCGACGANGTAGGGGGGGNGCCG 34 ****************** **** ** ** **** consensus_824#0 CCACGACACGACGATCATCGGAACGACGGCGTCTCCCAAAAAGATCCCGACGACGACGAG 1080 consensus_824#1 CCACGACACGACGATTATGGGAACGANGGCGTCTCCCAAAAAGATCCCGACGACGACGAG 94 *************** ** ******* ********************************* consensus_824#0 GACAGCCTCCTAGACCTACTGGCGGACACCGTGTCGGTCGGCGTGGTGGATGACGTCACC 1140 consensus_824#1 GACAGCCTCCTAGATCTACTGGCGGACACCGTGTCGGTTGGCGTGGTGGATGACGTCACC 154 ************** *********************** ********************* consensus_824#0 GAGAGGCTCCTCCTCGACTTCTTCGTCGAGGCGAAGTGCAGCTCCAGAAATATTGAGTTG 1200 consensus_824#1 GAGAGGCTCCTCCTCGACTTTTTTGTCGAGGCGAAGTGCAGCTCCAGAAATANTGAGTTG 214 ******************** ** **************************** ******* consensus_824#0 CATGCACCGACCAGTCTGTTACGAGAGAGGAGACGGCGAGAGAACGGCGAAACGATGAGA 1260 consensus_824#1 CATGCACCGACCAGTCTGTTACGAGAGAGGAGACGGCGAGAGAACGGCGAAACGATGAGA 274 ************************************************************ consensus_824#0 CTTGCCAAGGCCTGGCTTGAGGGCACGGGAACACCGTGGACGTTGAACGACGTGCTGTAC 1320 consensus_824#1 CTTGCCAAGGCCTGGCTTGAGGGCACGGGAACACCGTGGACGTTGAACGACGTGCTGTAC 334 ************************************************************ consensus_824#0 CACGGCGAGGATGGCATGGCGGAGATGGAGCGGAGCCGGCGGTGG--------------- 1365 consensus_824#1 CACGGCGAGGATGTCATGGCGGAGATGGAGCGGAGCCGGCGGTGGATGCACGCCGGCGAG 394 ************* ******************************* consensus_824#0 ----------------------------CGGCCATGGCGATGGACGAGCTGTTGCACGAG 1397 consensus_824#1 GAGGAGCGCGAGGCCGGCGTGGTGGTGGCGGCCATGGCGATGGACGAGCTGTTGCACGAG 454 ******************************** consensus_824#0 CTGGTGAGTGACCTGATTGCGTTGCCGAAGTAGTTCTTTGTTTGGATGTCAAAGTTGTCA 1457 consensus_824#1 CTGGTGAGTGACCTGATTGCGTTGCCGAAGTAGTTCTTTGTTTGGATGTCAAAGTTGTCA 514 ************************************************************ consensus_824#0 AATCGAGTGTAATGTAAACGTGAGATAGAACAGATTCAGTGAAGGTTGATATAGGGGGGT 1517 consensus_824#1 AATCGAGTGTAATGTAAACGTGAGATAGAACAGATTCAGTGAAGGTTGATATAGGGGGGT 574 ************************************************************ consensus_824#0 AGTGAGTTAGGGGCAGTGGAATAAAGCAGATGCATCTGTATATAGTTTTGTCAGAGTGGC 1577 consensus_824#1 AGTGAGTTAGGGGCAGTGGAATAAAGCAGATGCATCTGTATATAGTTTTGTCAGAGTAGC 634 ********************************************************* ** consensus_824#0 AATGGAAACAAGAAGATTACTGTTCTGTTTGGATGTAAATGTACACTCTACAGGTCATCA 1637 consensus_824#1 AATGGAAACAAG---ATTACTGTTCTGTTTGGATGTAAAAAAAAAAAAAA---------- 681 ************ ************************ * * * consensus_824#0 ACCTAAGGCCA 1648 consensus_824#1 ----------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||