These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8241#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1957 fasta sequence [GTCGTCGCCTCGCCTCGCCTCGCCTTCCCCCGCGTGGCCTCGCCGTCGGATCGAGCCACGCCGCCGCCGCCGCCGCGTCGCGGATCCCCACGCTCGCCGAGAGGAGGAGGAGGTGATGCCGCTTCCCGCTTGCCCCCACCCTCTCCTCTCGTCTCGCGGTTGCTTGGGTGCTTGTATGCTGGGTTTGTGCGATTCGGATTTGGGTTCGGGGCCGGTGGTCGATTCGGAGGGGGCACTGGCCGATTCAGGCGTAGATTTGGTTTGTTTGTTTATGGCGATCTGTTGTTTGCTAGTTGTTCATACGCGGGTTGGTTTTCCTAGAGAATTGGGATTTTTTTTAATTGTTCTGCGATTACGGTAGAAATAGATCGGGCTTATGGATAATCCCGTCTTCTTCTAGCGTGTGATTTTATCCTCCAACGTGGGAGATATTCCTAGATGTTTTATTTCCTTGTGTTGTTTATTTATGCTTAGATTGTTGATTCCATCCTTGTGGATCGTCAGCATCTTATTCTAGATGATCCTATATAATTGTGTGAAACAAAATTGAGGTTGTTGGGAGGGTTTCTGATCATCAGCTGTCCTCTTTACCGGCACGAATTTGGGGAATCTTTCTTGGTTGTGTTCTTGTTGGCTTATACCTTTTTTATGTTTTGCTCAAACTCATGAGATTTTTATCGTTTAATGCTGGATCCTTATGTATGACCACATGCTAGTAGCTGGCGGAGCAACTTCGTAATTGTTGCTAGTAGCCATTATATTACATAGTACTCCTAATATATTCTATCAGTTTTGCATAGCTATTTCTAGCATTGTTGGTGATTGTAGTTTCATTGGCAATTGCAGCTTCTTGCACTTTGAAGTAACAGCAAGATGGCAGCCAATGTTGGGGAATCTACAAGCAGCGGCACCAATGGCGATGCAGCTGGGGGGAGCTTTGAATGCAATATCTGCTTTGAATTGCCACAAGAACCAATAGTTACTCTCTGTGGCCACCTCTTCTGCTGGCCATGTATTTACAGGTGGTTGCACATCCACGCACACTCTCCAGAGTGCCCGGTGTGCAAAGCTGTCGTTGAAGAGGATAAGCTCGTTCCCCTTTATGGGCGTGGCAAGGACCGCGTCGATCCAAGGTCAAAGAACATACCCGAGGCTGACATTCCTAACCGCCCAACTGGCCAGA-GGCCTGCCACAGCTCCACAGGCCGATCCTAACAACAATTTTGCCCATGCCAATCCTAATGCTAATGCCAATCCATGGTTCAT-GGGCACTGGAGTACCATTGGCTAATGCAC-GGTGGGGGAATTA-TGCATTC-TCAGCTGCGTTTGGAGGCCTATTCCCTATGCTTAGCTTCCAAGTGCATGGATTTCCAGATGCAAATCCTTATGCACAGCCTGCTGGGTTTCACTATGGGTATGGCCATGGTCATGGATTCCATGGCGGACATATGGGTCATGCCGCCCACGGTGTCCCTCGACAAGGACCACTGGAGCAACCGCAGCAGGCAGACATCTACCTGAAGGCCCTGCTAATCATGGTTGGATTTCTTGTGGTTGCAAGCCTTCTTGCATTTTAAGATTGTTAACAGATTCACCTGGTGATAGAAGATGGTAAAAGAATTGCCAGCATATCCCTGTGGCGTTGTGGTGCGTGCAGTTTCTTCCTGCCAAATGTGGCATAAGTTATTTTGCGTATTTACATGAAGTGTTCATAGAATATTTGCATGTAGATGTAGGATAAGCATCTGGCTTTTTATAGCCTCATATGTAGTACTATAATTAGGAGGAGCCATTTTATTTTCTTTTCTTTTTTTAGTTTTGACTGTTTTGATGGATATGATGTACAATTATTGGGATGTTGTCTCCATGTGTTGTATACATGTAAGAATAGTTCTTCCCAAACTCTTGCTTGCAATTTGCACCAATTTCCAGTTTATATACATTGATGCTTGACAAAAA] [+] EMBL AK068558 [GTCGTCGCCTCGCCTCGCCTCGCCTTCCCCCGCGTGGCCTCGCCGTCGGATCGAGCCACGCCGCCGCCGCCGCCGCGTCGCGGATCCCCACGCTCGCCGAGAGGAGGAGGAGGTGATGCCGCTTCCCGCTTGCCCCCACCCTCTCCTCTCGTCTCGCGGTTGCTTGGGTGCTTGTATGCTGGGTTTGTGCGATTCGGATTTGGGTTCGGGGCCGGTGGTCGATTCGGAGGGGGCACTGGCCGATTCAGGCGTAGATTTGGTTTGTTTGTTTATGGCGATCTGTTGTTTGCTAGTTGTTCATACGCGGGTTGGTTTTCCTAGAGAATTGGGATTTTTTTTAATTGTTCTGCGATTACGGTAGAAATAGATCGGGCTTATGGATAATCCCGTCTTCTTCTAGCGTGTGATTTTATCCTCCAACGTGGGAGATATTCCTAGATGTTTTATTTCCTTGTGTTGTTTATTTATGCTTAGATTGTTGATTCCATCCTTGTGGATCGTCAGCATCTTATTCTAGATGATCCTATATAATTGTGTGAAACAAAATTGAGGTTGTTGGGAGGGTTTCTGATCATCAGCTGTCCTCTTTACCGGCACGAATTTGGGGAATCTTTCTTGGTTGTGTTCTTGTTGGCTTATACCTTTTTTATGTTTTGCTCAAACTCATGAGATTTTTATCGTTTAATGCTGGATCCTTATGTATGACCACATGCTAGTAGCTGGCGGAGCAACTTCGTAATTGTTGCTAGTAGCCATTATATTACATAGTACTCCTAATATATTCTATCAGTTTTGCATAGCTATTTCTAGCATTGTTGGTGATTGTAGTTTCATTGGCAATTGCAGCTTCTTGCACTTTGAAGTAACAGCAAGATGGCAGCCAATGTTGGGGAATCTACAAGCAGCGGCACCAATGGCGATGCAGCTGGGGGGAGCTTTGAATGCAATATCTGCTTTGAATTGCCACAAGAACCAATAGTTACTCTCTGTGGCCACCTCTTCTGCTGGCCATGTATTTACAGGTGGTTGCACATCCACGCACACTCTCCAGAGTGCCCGGTGTGCAAAGCTGTCGTTGAAGAGGATAAGCTCGTTCCCCTTTATGGGCGTGGCAAGGACCGCGTCGATCCAAGGTCAAAGAACATACCCGAGGCTGACATTCCTAACCGCCCAACTGGCCAGA GGCCTGCCACAGCTCCACAGGCCGATCCTAACAACAATTTTGCCCATGCCAATCCTAATGCTAATGCCAATCCATGGTTCAT GGGCACTGGAGTACCATTGGCTAATGCAC GGTGGGGGAATTA TGCATTC TCAGCTGCGTTTGGAGGCCTATTCCCTATGCTTAGCTTCCAAGTGCATGGATTTCCAGATGCAAATCCTTATGCACAGCCTGCTGGGTTTCACTATGGGTATGGCCATGGTCATGGATTCCATGGCGGACATATGGGTCATGCCGCCCACGGTGTCCCTCGACAAGGACCACTGGAGCAACCGCAGCAGGCAGACATCTACCTGAAGGCCCTGCTAATCATGGTTGGATTTCTTGTGGTTGCAAGCCTTCTTGCATTTTAAGATTGTTAACAGATTCACCTGGTGATAGAAGATGGTAAAAGAATTGCCAGCATATCCCTGTGGCGTTGTGGTGCGTGCAGTTTCTTCCTGCCAAATGTGGCATAAGTTATTTTGCGTATTTACATGAAGTGTTCATAGAATATTTGCATGTAGATGTAGGATAAGCATCTGGCTTTTTATAGCCTCATATGTAGTACTATAATTAGGAGGAGCCATTTTATTTTCTTTTCTTTTTTTAGTTTTGACTGTTTTGATGGATATGATGTACAATTATTGGGATGTTGTCTCCATGTGTTGTATACATGTAAGAAT ] [+] EMBL C26521 [ GCAATATCTGCTTTGAATTGCCACAAGAACCAATAGTTACTCTCTGTGGCCACCTCTTCTGCTGGCCATGTATTTACAGGTGGTTGCACATCCACGCACACTCTCCAGAGTGCCCGGTGTGCAAAGCTGTCGTTGAAGAGGATAAGCTCGTTCCCCTTTATGGGCGTGGCAAGGACCGCGTCGATCCAAGGTCAAAGAACATACCCGAGGCTGACATTCCTAACCGCCCAACTGGCCAGACGGNC NCACAGCTCCACAGGCCGATCCTAACAACAATTTTGCCCATGCCAATCCTAATGCTAATGCCAATCCATGGTTCATGGGGCACTGGAGTACCATTGGCTAATGCACGGGTGGGGGAATTATTGCATTCTTAAGCTGCGTTTGGAGGCCTATTNCCTATGCTTAGCTTCC AGTGCATGGATTTCCAGATGCAAAT ] [+] EMBL AU077935 [ TTATTTTGCGTATTTACATGAAGTGTTCATNGAATATTTGCATGTAGANGTAGGATAAGCATCTGGCTTTTTATAGCCTCATATGTAGTACTATAATTAGGAGGAGCCATTTTATTTNCTTTTCTTNTTTTAGTTTTGACTGTTTTGATGGATATGATGTACAATTATTGGGATGTTGTCTCCATGTGTTGTATACATGTAAGAATAGTTCTTCCCAAACTCTTGCTTGCAATTTGCACCAATTTCCAGTTTATATACATTGATGCTTGACAAAAA] consensusID : consensus_8241#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 710 fasta sequence [CCTCGCCTCGCCTTCCCCCGCGTGGCCTCGCCGTCGGATCGAGCCACGCCGCCGCCGCCGCCGCGTCGCGGATCCCCACGCTCGCCGAGANGAGGAGGAGCTTCTTGCACTTTGAAGAAACAGCAAGATGGCAGCCAATGTTGGGGAATCTACAAGCAGCGGCACCAATGGCGATGCAGCTGGGGGGAGCTTTGAATGCAATATCTGCTTTGAATTGCCACAAGAACCAATAGTTACTCTCTGTGGCCACCTCTTCTGCTGGCCATGTATTTACAGGTGGTTGCACATCCACGCACACTCTCCAGAGTGCCCGGTGTGCAAAGCTGTCGTTGAAGAGGATAAGCTCGTTCCCCTTTATGGGCGTNGCAAGGACCGCGTCGATCCAAGGTCAAAGAACATACCCGAGGCTGAC-ATTCCTAACCGCCCAACTGGCCAGAGGCTGCCACAGCTCCACAGGNCGATCCTAACAACAATTTTGCCCATGCCAATCCTAATGCTAATGCCAATCCATGGTTCATGGGCATGGAGTACCATTGGCTAATGCACGGTGGGGGAATTATGCATTCTCAGCNNGCGTTTGGGAAGCCTATTTCCCTANGCTTAACTTTCCAAGTGGCATGGATTTCCAAGATGNAAATCCNTATGCAACAGCCTTGCTTGGGTTTCAACTATGGGGTATGGNCANTGGTCATGGATTCCAATGGNCGGAC] [+] EMBL AU068650 [CCTCGCCTCGCCTTCCCCCGCGTGGCCTCGCCGTCGGATCGAGCCACGCCGCCGCCGCCGCCGCGTCGCGGATCCCCACGCTCGCCGAGANGAGGAGGAGCTTCTTGCACTTTGAAGAAACAGCAAGATGGCAGCCAATGTTGGGGAATCTACAAGCAGCGGCACCAATGGCGATGCAGCTGGGGGGAGCTTTGAATGCAATATCTGCTTTGAATTGCCACAAGAACCAATAGTTACTCTCTGTGGCCACCTCTTCTGCTGGCCATGTATTTACAGGTGGTTGCACATCCACGCACACTCTCCAGAGTGCCCGGTGTGCAAAGCTGTCGTTGAAGAGGATAAGCTCGTTCCCCTTTATGGGCGTNGCAAGGACCGCGTCGATCCAAGGTCAAAGAACATACCCGAGGCTGAC ATTCCTAACCGCCCAACTGGCCAGAGGCTGCCACAGCTCCACAGGNCGATCCTAACAACAATTTTGCCCATGCCAATCCTAATGCTAATGCCAATCCATGGTTCATGGGCATGGAGTACCATTGGCTAATGCACGGTGGGGGAATTATGCATTCTCAGCNNGCGTTTGGGAAGCCTATTTCCCTANGCTTAACTTTCCAAGTGGCATGGATTTCCAAGATGNAAATCCNTATGCAACAGCCTTGCTTGGGTTTCAACTATGGGGTATGGNCANTGGTCATGGATTCCAATGGNCGGAC] [+] EMBL C72285 [ CCCCGCGTGGCCTCGCCGTCGGATCGAGCCACGCCGCCGCCGCCGCCGCGTCGCGNATCCCCACGCTCGCCGAGAGGAGGAGGAGCTTCTTGCACTTTGAAGAAACAGCAAGATGGCAGCCAATGTTGGGGAATCTACAAGCAGCGGCACCAATGGCGATGCAGCTGGGGGGAGCTTTGAATGCAATATCTGCTTTGAATTGCCACAAGAACCAATAGTTACTCTCTGTGGCCACCTCTTCTGCTGGCCATGTATTTACAGGTGGTTGCACATCCACGCACACTCTCCAGAGTGCCCGGTGTGCAAAGCTGTCGTTGAAGAGGATAAGCTCGTTNCCCTTTATGGGCGTGGCAAGGACCGCGTCGATCCAAGGTCAAAG ACATACCCGAGGCTGACAATTCTAAACCG CCAACTGGCCAGAGcttg ] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_8241#0 GTCGTCGCCTCGCCTCGCCTCGCCTTCCCCCGCGTGGCCTCGCCGTCGGATCGAGCCACG 60 consensus_8241#1 ------------------------------------------------------------ consensus_8241#0 CCGCCGCCGCCGCCGCGTCGCGGATCCCCACGCTCGCCGAGAGGAGGAGGAGGTGATGCC 120 consensus_8241#1 ------------------------------------------------------------ consensus_8241#0 GCTTCCCGCTTGCCCCCACCCTCTCCTCTCGTCTCGCGGTTGCTTGGGTGCTTGTATGCT 180 consensus_8241#1 ------------------------------------------------------------ consensus_8241#0 GGGTTTGTGCGATTCGGATTTGGGTTCGGGGCCGGTGGTCGATTCGGAGGGGGCACTGGC 240 consensus_8241#1 ------------------------------------------------------------ consensus_8241#0 CGATTCAGGCGTAGATTTGGTTTGTTTGTTTATGGCGATCTGTTGTTTGCTAGTTGTTCA 300 consensus_8241#1 ------------------------------------------------------------ consensus_8241#0 TACGCGGGTTGGTTTTCCTAGAGAATTGGGATTTTTTTTAATTGTTCTGCGATTACGGTA 360 consensus_8241#1 ------------------------------------------------------------ consensus_8241#0 GAAATAGATCGGGCTTATGGATAATCCCGTCTTCTTCTAGCGTGTGATTTTATCCTCCAA 420 consensus_8241#1 ------------------------------------------------------------ consensus_8241#0 CGTGGGAGATATTCCTAGATGTTTTATTTCCTTGTGTTGTTTATTTATGCTTAGATTGTT 480 consensus_8241#1 ------------------------------------------------------------ consensus_8241#0 GATTCCATCCTTGTGGATCGTCAGCATCTTATTCTAGATGATCCTATATAATTGTGTGAA 540 consensus_8241#1 ------------------------------------------------------------ consensus_8241#0 ACAAAATTGAGGTTGTTGGGAGGGTTTCTGATCATCAGCTGTCCTCTTTACCGGCACGAA 600 consensus_8241#1 ------------------------------------------------------------ consensus_8241#0 TTTGGGGAATCTTTCTTGGTTGTGTTCTTGTTGGCTTATACCTTTTTTATGTTTTGCTCA 660 consensus_8241#1 ------------------------------------------------------------ consensus_8241#0 AACTCATGAGATTTTTATCGTTTAATGCTGGATCCTTATGTATGACCACATGCTAGTAGC 720 consensus_8241#1 ------------------------------------------------------------ consensus_8241#0 TGGCGGAGCAACTTCGTAATTGTTGCTAGTAGCCATTATATTACATAGTACTCCTAATAT 780 consensus_8241#1 --------------------CCTCGCC--TCGCC-TTCCCCCGCGTGGCCTCGCCGTCGG 37 * ** * *** ** * * * * consensus_8241#0 ATTCTATCAGTTTTGCATAGCTATTTCTAGCATTGTTGGTGATTGTAGTTTCATTGGCAA 840 consensus_8241#1 ATCGAGCCACGCCGCCGCCGCCGCC----GCGTCGCGGATCCCCACGCTCGCCGAGANGA 93 ** ** * ** ** * * * * * * * * consensus_8241#0 TT-GCAGCTTCTTGCACTTTGAAGTAACAGCAAGATGGCAGCCAATGTTGGGGAATCTAC 899 consensus_8241#1 GGAGGAGCTTCTTGCACTTTGAAGAAACAGCAAGATGGCAGCCAATGTTGGGGAATCTAC 153 * ******************* *********************************** consensus_8241#0 AAGCAGCGGCACCAATGGCGATGCAGCTGGGGGGAGCTTTGAATGCAATATCTGCTTTGA 959 consensus_8241#1 AAGCAGCGGCACCAATGGCGATGCAGCTGGGGGGAGCTTTGAATGCAATATCTGCTTTGA 213 ************************************************************ consensus_8241#0 ATTGCCACAAGAACCAATAGTTACTCTCTGTGGCCACCTCTTCTGCTGGCCATGTATTTA 1019 consensus_8241#1 ATTGCCACAAGAACCAATAGTTACTCTCTGTGGCCACCTCTTCTGCTGGCCATGTATTTA 273 ************************************************************ consensus_8241#0 CAGGTGGTTGCACATCCACGCACACTCTCCAGAGTGCCCGGTGTGCAAAGCTGTCGTTGA 1079 consensus_8241#1 CAGGTGGTTGCACATCCACGCACACTCTCCAGAGTGCCCGGTGTGCAAAGCTGTCGTTGA 333 ************************************************************ consensus_8241#0 AGAGGATAAGCTCGTTCCCCTTTATGGGCGTGGCAAGGACCGCGTCGATCCAAGGTCAAA 1139 consensus_8241#1 AGAGGATAAGCTCGTTCCCCTTTATGGGCGTNGCAAGGACCGCGTCGATCCAAGGTCAAA 393 ******************************* **************************** consensus_8241#0 GAACATACCCGAGGCTGACATTCCTAACCGCCCAACTGGCCAGAGGCCTGCCACAGCTCC 1199 consensus_8241#1 GAACATACCCGAGGCTGACATTCCTAACCGCCCAACTGGCCAGAGGC-TGCCACAGCTCC 452 *********************************************** ************ consensus_8241#0 ACAGGCCGATCCTAACAACAATTTTGCCCATGCCAATCCTAATGCTAATGCCAATCCATG 1259 consensus_8241#1 ACAGGNCGATCCTAACAACAATTTTGCCCATGCCAATCCTAATGCTAATGCCAATCCATG 512 ***** ****************************************************** consensus_8241#0 GTTCATGGGCACTGGAGTACCATTGGCTAATGCACGGTGGGGGAATTATGCATTCTCAGC 1319 consensus_8241#1 GTTCATGGGCA-TGGAGTACCATTGGCTAATGCACGGTGGGGGAATTATGCATTCTCAGC 571 *********** ************************************************ consensus_8241#0 TG-CGTTTGG-AGGCCTATT-CCCTATGCTTAGCTT-CCAAGTG-CATGGATTTCCA-GA 1373 consensus_8241#1 NNGCGTTTGGGAAGCCTATTTCCCTANGCTTAACTTTCCAAGTGGCATGGATTTCCAAGA 631 ******* * ******* ***** ***** *** ******* ************ ** consensus_8241#0 TGCAAATCCTTATGCA-CAGCCTG--CTGGGTTTCA-CTATGGG-TATGGCCAT-GGTCA 1427 consensus_8241#1 TGNAAATCCNTATGCAACAGCCTTGCTTGGGTTTCAACTATGGGGTATGGNCANTGGTCA 691 ** ****** ****** ****** ********* ******* ***** ** ***** consensus_8241#0 TGGATTCCATGGCGGACATATGGGTCATGCCGCCCACGGTGTCCCTCGACAAGGACCACT 1487 consensus_8241#1 TGGATTCCA--ATGGNCGGAC--------------------------------------- 710 ********* ** * * consensus_8241#0 GGAGCAACCGCAGCAGGCAGACATCTACCTGAAGGCCCTGCTAATCATGGTTGGATTTCT 1547 consensus_8241#1 ------------------------------------------------------------ consensus_8241#0 TGTGGTTGCAAGCCTTCTTGCATTTTAAGATTGTTAACAGATTCACCTGGTGATAGAAGA 1607 consensus_8241#1 ------------------------------------------------------------ consensus_8241#0 TGGTAAAAGAATTGCCAGCATATCCCTGTGGCGTTGTGGTGCGTGCAGTTTCTTCCTGCC 1667 consensus_8241#1 ------------------------------------------------------------ consensus_8241#0 AAATGTGGCATAAGTTATTTTGCGTATTTACATGAAGTGTTCATAGAATATTTGCATGTA 1727 consensus_8241#1 ------------------------------------------------------------ consensus_8241#0 GATGTAGGATAAGCATCTGGCTTTTTATAGCCTCATATGTAGTACTATAATTAGGAGGAG 1787 consensus_8241#1 ------------------------------------------------------------ consensus_8241#0 CCATTTTATTTTCTTTTCTTTTTTTAGTTTTGACTGTTTTGATGGATATGATGTACAATT 1847 consensus_8241#1 ------------------------------------------------------------ consensus_8241#0 ATTGGGATGTTGTCTCCATGTGTTGTATACATGTAAGAATAGTTCTTCCCAAACTCTTGC 1907 consensus_8241#1 ------------------------------------------------------------ consensus_8241#0 TTGCAATTTGCACCAATTTCCAGTTTATATACATTGATGCTTGACAAAAA 1957 consensus_8241#1 -------------------------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||