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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8249#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 2725 fasta sequence
[TGGTCCATCCATACATACAGCCATAGAGAGAGAGAGTGTGTGTGTGGCAGATTGCAAAGCCATTTGCACGGCATCCTTAATTCATTTTCCTGCGCCTGTCAATTGCAGCAAGATCACATGAACTCACCAAACCCCTCCATAAATTAATCACAAGGCACCAGCCCCACCCTCTCTCCATCTCCACGATGCATGTTCCACTGCTCTCTCTCTCTCTCTCTCTCTCCCTCTCTCTCTCTCTCTCTTCCTGTCATGGACGGATGGACCAGGGCCTAGCTCGTACTACTACAAAAGACGGCATCAGTTTTTTGGCCACCTCTCCTCTCCTTGTTTGCCTCCTTTCTTCTTCTTCTTCTTCTCCCTCATTTGAGCTGAGAAGTTAAGTTGGAACCAAGAACTATACTAGTTATATTATGTAGAGGAAACATCACAAAAGAATATCAGAAAATAAAAAGAAACCGTTCCATGCCACCCTGAGATTCTCCTACAAGCTAGCCCAACCAAGGAAACAGCAATTTTTAAGCTGTTTCTCTTGATACTCGATCTACATCTTTTCCCTTAGTTTAACACTCTTTTTCAGTGGGTTTACTACTCTTGTGTGGTGGTGGTAGTGGTAGATCAAGAGCCAAGAAGTCCGGGAAAAAAATTCTACTTGTTTCGTCCATTTGGTTTAGTCTGCCAAAGCAGAAGTCAGTGGCGAGATCTTGTTTCTACTCCATTCGCATCATTCTGCTGCCAATTTGCCCTCAGAGAAGAGGGAGATTCGGCAGCGGAAGAGAGCGGAGTATCTCCGGCGATGGCGGCGGCGCTGGAGTGCTGGTCGGGCCGGCCGAGCACCGACGAGGAGATGGTGGAGCAGGTGCTCATGAAGCCCCACGTCCGCTCGGACGATTCCCTCCCCACCTGCGCCGACGCGGCCTTCGCCGCCGGCGAGCCGACGACGGCGCAGGCGGCGCCGAAGAAGTGGCAGCGGCTGGGGCGCAACTTCGCCGGCGCCATCGCGGCGTTCAAGAGCTCGCTGAACCTGGACAACGGCAGCCTCCCTCGCGACCCCTCGCCGCGCGCCGTCGGCGAGAGGCCGCCGCTCCTCGTCCGCGGCTTCCAGCAGCTCTACTCCCGCGGCGGCGCCACCCAGCAGCTGCCGGAGAAGCTCGTCGCTGACCTCCGCCGCCACTTCGACGCTCTTCCCAACAGCTATGCACAGGCTGGATTTGACATGAAAGATGTGCTCTTGCATGCCCGTCTTGTAGAGCAGGCAGCTGGTGAGGATCAGCCTGCAGTGAGTATTGAGGAAGTTCCTGGAAGCAATGGCAGAGGAGGTGCCAATGAAGGAACTGTTTTTCAGCTCACTTTTGCCTGCAGTGCACCACTTTCATGGCAGTCAATGTCAGGCTCACTTGATAGTCCTTCATTTTGCTGCAAGAGGATCCAGATCTTCGAGAAGAGAGGATTGACGCTTGGTGTTGTAATGATACTCGTGCAGCCTGGGAATGAGGTGTTCTTCAAGAACCGGGTCGACGCAGCACTGAAATCAGCAATAAAGAAGCAGCGGAAGAACAGCGGCGGTGTTAAGCTCCCATTTGGGCTCTGTGGTTGTCAAGAAGAAGGTTCAAGAAACTTTGATGAGGAATCTATGTTTGATCCAGATGATGGTCAGGTTCTTGACAATGAGCCAACTTGCAAGCCACAGCTGCCTACCCCACTACCACAATCATCAGTTTTTGTTTCTATAGACGAGTGGCAAACCATTCGATCTGGTGGCGAGGAGCTTGGCCGCTGGATGCTGAGCTCTGAGGAAATCGAGTTTATTGATTGGGTTGGTCCAAATTCATTCAAGGGTGTTTTTAGAGGAAGGAAGGTTTGGGTCAACAAAATGAGGGGCTGTGACATGGGAAGTGCTTATGATGTTGAAATCCGTCAGGACTTGTTGCAGCTGATGAGCTGTGGCCAGAGGAACATCCTCCAATTCCATGGGATTTGCTTCAATGAGAACCATGGGCTCTGCATAATAACAAGGATGATGGAAGGAGGATCGGTTCATGATATCATCATGCAGAGAAGCAAGAGATTGTCACTCCGAGACATTCTTAAGATCGCTATTGATGTTGCTGAGGGTTTGGCCTTCATGAACAGCTACGCAATTACCTATCGTGATCTTAACGCTCGGAGGATCCTGCTCGACAGGCAAGGAAATGCGTGCCTCGGGGATATGGGCATTGTTACCCCTTGTAATAATGCTGGTGAGGTCACCGAGTACGAGACTTCTGGCTATCGATGGCTAGCTCCTGAGATCATTGCCGGAGATCCCGAGAGCGTGTCGGAGACCTGGATGAGCAACGTCTACAGCTACGGGATGGTGCTGTGGGAGATGGTCACAGGTGAGGAGGCATACTCCACATACTCCCCGGTGCAGGCAGCGGTGGGGATCGCCGCATGCGGGCTGAGGCCAGAGATACCAAGAGACTGCCCTCATTTCCTCAGGTCACTGATGACCAGGTGCTGGGACAACAACCCTCTGAAGCGCCCCCAGTTTTCAGAGATCATCTCCATGCTGCAAAGGCAGAATGTCAGATAGTTTTTCTCCTTCTTCTTCTTCTTCTTTTCCTATGCTGCATATCTGC-TTTTGTCT-GGCTGTTTGCCCCAATCATGCAGGGAACTGCATATGAGAGAATATAATATATGTGCAAAGGCTTGGTATATTGCTCATCTTGCTTCTAAAAAAATGCTC]
[+] EMBL AK102156 [TGGTCCATCCATACATACAGCCATAGAGAGAGAGAGTGTGTGTGTGGCAGATTGCAAAGCCATTTGCACGGCATCCTTAATTCATTTTCCTGCGCCTGTCAATTGCAGCAAGATCACATGAACTCACCAAACCCCTCCATAAATTAATCACAAGGCACCAGCCCCACCCTCTCTCCATCTCCACGATGCATGTTCCACTGCTCTCTCTCTCTCTCTCTCTCTCCCTCTCTCTCTCTCTCTCTTCCTGTCATGGACGGATGGACCAGGGCCTAGCTCGTACTACTACAAAAGACGGCATCAGTTTTTTGGCCACCTCTCCTCTCCTTGTTTGCCTCCTTTCTTCTTCTTCTTCTTCTCCCTCATTTGAGCTGAGAAGTTAAGTTGGAACCAAGAACTATACTAGTTATATTATGTAGAGGAAACATCACAAAAGAATATCAGAAAATAAAAAGAAACCGTTCCATGCCACCCTGAGATTCTCCTACAAGCTAGCCCAACCAAGGAAACAGCAATTTTTAAGCTGTTTCTCTTGATACTCGATCTACATCTTTTCCCTTAGTTTAACACTCTTTTTCAGTGGGTTTACTACTCTTGTGTGGTGGTGGTAGTGGTAGATCAAGAGCCAAGAAGTCCGGGAAAAAAATTCTACTTGTTTCGTCCATTTGGTTTAGTCTGCCAAAGCAGAAGTCAGTGGCGAGATCTTGTTTCTACTCCATTCGCATCATTCTGCTGCCAATTTGCCCTCAGAGAAGAGGGAGATTCGGCAGCGGAAGAGAGCGGAGTATCTCCGGCGATGGCGGCGGCGCTGGAGTGCTGGTCGGGCCGGCCGAGCACCGACGAGGAGATGGTGGAGCAGGTGCTCATGAAGCCCCACGTCCGCTCGGACGATTCCCTCCCCACCTGCGCCGACGCGGCCTTCGCCGCCGGCGAGCCGACGACGGCGCAGGCGGCGCCGAAGAAGTGGCAGCGGCTGGGGCGCAACTTCGCCGGCGCCATCGCGGCGTTCAAGAGCTCGCTGAACCTGGACAACGGCAGCCTCCCTCGCGACCCCTCGCCGCGCGCCGTCGGCGAGAGGCCGCCGCTCCTCGTCCGCGGCTTCCAGCAGCTCTACTCCCGCGGCGGCGCCACCCAGCAGCTGCCGGAGAAGCTCGTCGCTGACCTCCGCCGCCACTTCGACGCTCTTCCCAACAGCTATGCACAGGCTGGATTTGACATGAAAGATGTGCTCTTGCATGCCCGTCTTGTAGAGCAGGCAGCTGGTGAGGATCAGCCTGCAGTGAGTATTGAGGAAGTTCCTGGAAGCAATGGCAGAGGAGGTGCCAATGAAGGAACTGTTTTTCAGCTCACTTTTGCCTGCAGTGCACCACTTTCATGGCAGTCAATGTCAGGCTCACTTGATAGTCCTTCATTTTGCTGCAAGAGGATCCAGATCTTCGAGAAGAGAGGATTGACGCTTGGTGTTGTAATGATACTCGTGCAGCCTGGGAATGAGGTGTTCTTCAAGAACCGGGTCGACGCAGCACTGAAATCAGCAATAAAGAAGCAGCGGAAGAACAGCGGCGGTGTTAAGCTCCCATTTGGGCTCTGTGGTTGTCAAGAAGAAGGTTCAAGAAACTTTGATGAGGAATCTATGTTTGATCCAGATGATGGTCAGGTTCTTGACAATGAGCCAACTTGCAAGCCACAGCTGCCTACCCCACTACCACAATCATCAGTTTTTGTTTCTATAGACGAGTGGCAAACCATTCGATCTGGTGGCGAGGAGCTTGGCCGCTGGATGCTGAGCTCTGAGGAAATCGAGTTTATTGATTGGGTTGGTCCAAATTCATTCAAGGGTGTTTTTAGAGGAAGGAAGGTTTGGGTCAACAAAATGAGGGGCTGTGACATGGGAAGTGCTTATGATGTTGAAATCCGTCAGGACTTGTTGCAGCTGATGAGCTGTGGCCAGAGGAACATCCTCCAATTCCATGGGATTTGCTTCAATGAGAACCATGGGCTCTGCATAATAACAAGGATGATGGAAGGAGGATCGGTTCATGATATCATCATGCAGAGAAGCAAGAGATTGTCACTCCGAGACATTCTTAAGATCGCTATTGATGTTGCTGAGGGTTTGGCCTTCATGAACAGCTACGCAATTACCTATCGTGATCTTAACGCTCGGAGGATCCTGCTCGACAGGCAAGGAAATGCGTGCCTCGGGGATATGGGCATTGTTACCCCTTGTAATAATGCTGGTGAGGTCACCGAGTACGAGACTTCTGGCTATCGATGGCTAGCTCCTGAGATCATTGCCGGAGATCCCGAGAGCGTGTCGGAGACCTGGATGAGCAACGTCTACAGCTACGGGATGGTGCTGTGGGAGATGGTCACAGGTGAGGAGGCATACTCCACATACTCCCCGGTGCAGGCAGCGGTGGGGATCGCCGCATGCGGGCTGAGGCCAGAGATACCAAGAGACTGCCCTCATTTCCTCAGGTCACTGATGACCAGGTGCTGGGACAACAACCCTCTGAAGCGCCCCCAGTTTTCAGAGATCATCTCCATGCTGCAAAGGCAGAATGTCAGATAGTTTTTCTCCTTCTTCTTCTTCTTCTTTTCCTATGCTGCATATCTGC TTTTGTCT GGCTGTTTGCCCCAATCATGCAGGGAACTGCATATGAGAGAATATAATATATGTGCAAAGGCTTG ]
[+] EMBL AK072429 [ CCTTGTTTGCCTCCTTTCTTCTTCTTCTTCTTCTCCCTCATTTGAGCTGAGAAGTTAAGTTGGAACCAAGAACTATACTAGTTATATTATGTAGAGGAAACATCACAAAAGAATATCAGAAAATAAAAAGAAACCGTTCCATGCCACCCTGAGATTCTCCTACAAGCTAGCCCAACCAAGGAAACAGCAATTTTTAAGCTGTTTCTCTTGATACTCGATCTACATCTTTTCCCTTAGTTTAACACTCTTTTTCAGTGGGTTTACTACTCTTGTGTGGTGGTGGTAGTGGTAGATCAAGAGCCAAGAAGTCCGGGAAAAAAATTCTACTTGTTTCGTCCATTTGGTTTAGTCTGCCAAAGCAGAAGTCAGTGGCGAGATCTTGTTTCTACTCCATTCGCATCATTCTGCTGCCAATTTGCCCTCAGAGAAGAGGGAGATTCGGCAGCGGAAGAGAGCGGAGTATCTCCGGCGATGGCGGCGGCGCTGGAGTGCTGGTCGGGCCGGCCGAGCACCGACGAGGAGATGGTGGAGCAGGTGCTCATGAAGCCCCACGTCCGCTCGGACGATTCCCTCCCCACCTGCGCCGACGCGGCCTTCGCCGCCGGCGAGCCGACGACGGCGCAGGCGGCGCCGAAGAAGTGGCAGCGGCTGGGGCGCAACTTCGCCGGCGCCATCGCGGCGTTCAAGAGCTCGCTGAACCTGGACAACGGCAGCCTCCCTCGCGACCCCTCGCCGCGCGCCGTCGGCGAGAGGCCGCCGCTCCTCGTCCGCGGCTTCCAGCAGCTCTACTCCCGCGGCGGCGCCACCCAGCAGCTGCCGGAGAAGCTCGTCGCTGACCTCCGCCGCCACTTCGACGCTCTTCCCAACAGCTATGCACAGGCTGGATTTGACATGAAAGATGTGCTCTTGCATGCCCGTCTTGTAGAGCAGGCAGCTGGTGAGGATCAGCCTGCAGTGAGTATTGAGGAAGTTCCTGGAAGCAATGGCAGAGGAGGTGCCAATGAAGGAACTGTTTTTCAGCTCACTTTTGCCTGCAGTGCACCACTTTCATGGCAGTCAATGTCAGGCTCACTTGATAGTCCTTCATTTTGCTGCAAGAGGATCCAGATCTTCGAGAAGAGAGGATTGACGCTTGGTGTTGTAATGATACTCGTGCAGCCTGGGAATGAGGTGTTCTTCAAGAACCGGGTCGACGCAGCACTGAAATCAGCAATAAAGAAGCAGCGGAAGAACAGCGGCGGTGTTAAGCTCCCATTTGGGCTCTGTGGTTGTCAAGAAGAAGGTTCAAGAAACTTTGATGAGGAATCTATGTTTGATCCAGATGATGGTCAGGTTCTTGACAATGAGCCAACTTGCAAGCCACAGCTGCCTACCCCACTACCACAATCATCAGTTTTTGTTTCTATAGACTAGTGGCAAACCATTCGATCTGGTGGCGAGGAGCTTGGCCGCTGGATGCTGAGCTCTGAGGAAATCGAGTTTATTGATTGGGTTGGTCCAAATTCATTCAAGGGTGTTTTTAGAGGAAGGAAGGTTTGGGTCAACAAAATGAGGGGCTGTGACATGGGAAGTGCTTATGATGTTGAAATCCGTCAGGACTTGTTGCAGCTGATGAGCTGTGGCCAGAGGAACATCCTCCAATTCCATGGGATTTGCTTCAATGAGAACCATGGGCTCTGCATAATAACAAGGATGATGGAAGGAGGATCGGTTCATGATATCATCATGCAGAGAAGCAAGAGATTGTCACTCCGAGACATTCTTAAGATCGCTATTGATGTTGCTGAGGGTTTGGCCTTCATGAACAGCTACGCAATTACCTATCGTGATCTTAACGCTCGGAGGATCCTGCTCGACAGGCAAGGAAATGCGTGCCTCGGGGATATGGGCATTGTTACCCCTTGTAATAATGCTGGTGAGGTCACCGAGTACGAGACTTCTGGCTATCGATGGCTAGCTCCTGAGATCATTGCCGGAGATCCCGAGAGCGTGTCGGAGACCTGGATGAGCAACGTCTACAGCTACGGGATGGTGCTGTGGGAGATGGTCACAGGTGAGGAGGCATACTCCACATACTCCCCGGTGCAGGCAGCGGTGGGGATCGCCGCATGCGGGCTGAGGCCAGAGATACCAAGAGACTGCCCTCATTTCCTCAGGTCACTGATGACCAGGTGCTGGGACAACAACCCTCTGAAGCGCCCCCAGTTTTCAGAGATCATCTCCATGCTGCAAAGGCAGAATGTCAGATAGTTTTTCTCCTTCTTCTTCTTCTTCTTTTCCTATGCTGCATATCTGC TTTTGTCT GGCTGTTTGCCCCAATCATGCAGGGAACTGCATATGAGAGAATATAATATATGTGCA ]
[+] EMBL CF308239 [ AGGATTGACGCTTGGTGTTGTAATGATACTCGTGCAGCCTGGGAATGAGGTGTTCTTCAAGAACCGGGTCGACGCAGCACTGAAATCAGCAATAAAGAAGCAGCGGAAGAACAGCGGCGGTGTTAAGCTCCCATTTGGGCTCTGTGGTTGTCAAGAAGAAGGTTCAAGAAACTTTGATGAGGAATCTATGTTTGATCCAGATGATGGTCAGGTTCTTGACAATGAGCCAACTTGCAAGCCACAGCTGCCTACCCCACTACCACAATCATCAGTTTTTGTTTCTATAGACGAGTGGCAAACCATTCGATCTGGTGGCTAGGAGCTTGGCCGCTGGATGCTGAGCTCTGAGGAAATCGAGTTTATTGATTGGGTTGGTCCAAATTCATTCAAGGGTGTTTTTAGAGGAAGGAAGGTTTGGGTCAACAAAATGAGGGGCTGTGACATGGGAAGTGCTTATGATGTTGAAATCCGTCAGGACTTGTTGCAGCTGATGAGCTGTGGCCAGAGGAACATCCTCCAATTCCATGGGTTTTGCTTCAATGAGAACCATGGGCTCTGCATAATAACAAGGATGATGGAAGGAGGATCGGTTCATGAT ]
[+] EMBL CA765573 [ GAGAACCATGGGCTCTGCATAATAACAAGGATGATGGAAGGAGGATCGGTTCATGATATCATCATGCAGAGAAGCAAGAGATTGTCACTCCGAGACATTCTTAAGATCGCTATTGATGTTGCTGAGGGTTTGGCCTTCATGAACAGCTATGCAATTACCTATCGTGATCTTAACGCTCGGAGGATCCTGCTCGACAGGCAAGGAAATGCGTGCCTCGGGGATATGGGCATTGTTACCCCTTGTAATAATGCTGGTGAGGTCACCGAGTATGAGACTTCTGGCTATCGATGGCTAGCTCCTGAGATCATTGCCGGAGATCCCGAGAGCGTGTCGGAGACCTGGATGAGCAACGTCTACAGCTACGGGATGGTGCTGTGGGAGATGGTCACAGGTGAGGAGGCATACTCCACATACTCCCCGGTGCAGGCAGCGGTGGGGATCGCCGCATGCGGGCTGAGGCCAGAGATACCAAGAGACTGCCCTCATTTCCTCAGGTCACTGATGACCAGGTGCTGGGACAACAACCCTCTGAAGCGCCCCCAGTTTTCAGAGATCATCTCCATGCTGCAAAGGCAGAATGTCAGGTAGNTTTTCTTCTTCTTCTTCTTCTTCTTTTCCTATGCTGCATATCTGCTTTTTGTCTGGGCTGNTTGCCCCAATCATGCAGGGAACTGCATATGAGAG TATAATATATGTGCAAAGGCTTGGTATATTGCTCATCTTGCTTCTAAAAAAATGCTC]
[-] EMBL CF308240 [ TGATGTTGCTGAGGGTTTGGCCTTCATGAACAGCTACGCAATTACCTATCGTGATCTTAACGCTCGGAGGATCCTGCTCGACAGGCAAGGAAATGCGTGCCTCGGGGATATGGGCATTGTTACCCCTTGTAATAATGCTGGTGAGGTCACCGAGTACGAGACTTCTGGCTATCGATGGCTAGCTCCTGAGATCATTGCCGGAGATCCCGAGAGCGTGTCGGAGACCTGGATGAGCAACGTCTACAGCTACGGGATGGTGCTGTGGGAGATGGTCACAGGTGAGGAGGCATACTCCACATACTCCCCGGTGCAGGCAGCGGTGGGGATCGCCGCATGCGGGCTGAGGCCAGAGATACCAAGAGACTGCCCTCATTTCCTCAGGTCACTGATGACCAGGTGCTGGGACAACAACCCTCTGAAGCGCCCCCAGTTTTCAGAGATCATCTCCATACTGCAAAGGCAGAATGTCAGATAGTTTTTCTCCTTCTTCTTCTTCTTCTTTTCCTATGCTGCATATCTGC TTTTGTCT GGCTGTTTGCCCCAATCATGCAGGGAACTGCATATGAGAGAATATAATATATGTGCAAAGGCTTGTTATAaaaaaaa ]
clustalw multiple alignements is not computed in this case |
| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||