These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8250#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 899 fasta sequence [AATNAGGAAGGAGGAGCATATTGAGAAGACACTCAATGAGGAGGCCAACATTGAGGATGTTGATACAGATGATGAGTTGAATGAAGCAGAGGAGTACGAGTCATGGAAGAATCGAGAAATAGCTAGAATCAAGAGGGACAGGGAAGAAAGAGATGCAAGGTTGAAGGAGAAGGAGGAGATTGAGAAGGTGCGGAATATGACCGAGGAGGAGCGGCGAGAATGGGAGCGAAAGAATCCTAAGCCACTTCGTGAGAACAAGCAGAAGTGGAAGTTTATGCAGAAGTATTACCACAAGGGTGCCTTCTTCCAGGAAGGTGCTGATGATGTTATCCAATCAGCTGGTAAAGATGATATTTACGCTCGTGATTTCTCTGCACCAACTGGTGAAGATAAGATGGACAAGAGCATCTTGCCCAAGGTTATGCAAGTTAAGCACTTCGGACGGAGTGGCAGAACGAAGTGGACACATCTTGTTAATGAGGATACTACAGATTGGAATGCACCGTGGGCTACAAATGGGCCCTTGCGAGCAAAGTACAATGCAAAAATGGCAGGCATGAATGCTCCTATTGCCAAACCAAAGGGAAGTAAGAAGATGAAAGACTGGGATACAAAACAGGATGATTAAATGAATACTAGATGAAGTCTGGTACTGCTCTCTTACTTTCATAGGGACAGACTAATGGTAGCTGCAAAACATGTTTATGCAGATAGTTTGTTTCTCTTCTTTTTGCTGCATAAGACATGATTCTACCGTGCCATCAACTGTCTTACAGTTTACATCTGCTACCAAAATTTCTGCAAAGTATGTAAACGATCGATTGGTAGCCGCTTGTCATGTACTGTCCTGTTATGCTTAATTAGAGAAGAATTGTGTAAAAAAAAAAAAAAAAAAAAAA] [+] EMBL CA766741 [AATNAGGAAGGAGGAGCATATTGAGAAGACACTCAATGAGGAGGCCAACATTGAGGATGTTGATACAGATGATGAGTTGAATGAAGCAGAGGAGTACGAGTCATGGAAGAATCGAGAAATAGCTAGAATCAAGAGGGACAGGGAAGAAAGAGATGCAAGGTTGAAGGAGAAGGAGGAGATTGAGAAGGTGCGGAACATGACCGAGGAGGAGCGGCGAGAATGGGAGCGAAAGAATCCTAAGCCACTTCGTGAGAACAAGCAGAAGTGGAAGCTTATGCAGAAGTATTACCACAAGGGTGCCTTCTTCCAGGAAGGTGCTGATGATGTTATCCAATCAGCTGGTAAAGATGATATTTACGCTCGTGATTTCTCTGCACCAACTGGTGAAGATAAGATGGACAAGAGCATCTTGCCCAAGGTTATGCAAGTTAAGCACTTCGGACGGAGTGGCAGAACGAAGTGGACACATCTTGTTAATGAGGATACTACAGATTGGAATGCACCGTGGGCTACAAATGGGCCCTTGCGAGCAAAGTACAATGCAAAAATGGCAGGCATGAATGCTCCTATTGCCAAACCAAAGGGAAGTAAGAAGATGAAAGACTGGGATACAAAACAGGATGATTAAATGAATACTAGATGAAGTCTGGTACTGCTCTCTTACTTTCATAGGGACAGACTAATGGTAGCTGCAAAACATGTTTATGCAGATAGGTTGGTTCTCTTCTTTTTGCTGCATAANGCATGATTCTACCGTGCCATCAACTGTCTTA ] [+] EMBL C72967 [ AGAAGACACTCAATGAGGAGGCCAACATTGAGGATGTTGATACAGATGATGAGTTGAATGAAGCAGAGGAGTATGAGTCATGGAAGAATCGAGAAATAGCTAGAATCAAGAGGGACAGGGAAGAAAGAGATGCAAGGTTGAAGGAGAAGGAGGAGATTGAGAANGTGCGGAATATGACCGANGA ] [+] EMBL AU101209 [ GGAATATGACCGAGGAGGACCGCCGAGATTGGGNNCGAAAGAATCCTAAGCC CTNCGTGAGAACAANCAGAAGTGGAAGTTTATGCAGAAGTATTACCACAAGGGTCCCTTCTTCCGGGAAGGTGCTGATGATGTTATCCAATCAGCTGGTAAAGATGATATTTATGCTCGTGATTTCTCTGCACCAACTGGTGAAGATAAGATGGACAAAAGCATCTTGCCCAAGGTTATGCAAGTTAAGCACTTCGGACGGAGTGGCAGAACGAAGTGGACACATCTTGTTAATGAGGATACTACAGATTGGAATGCACCGTGGGCTACAAATGGGCCCTTGCGAGCAAAGTACAATGCAAAAATGGCAGGCATGAATGCTCCTATTGCCAAACCAAAGGGAAGTAAGAAGATGAAAGACTGGGACACAAAACAGGATGATTAAATGAATACTAGATGAAGTCTGGTACTGCTCTCTTACTTTCATAGGGACAGACTAATGGTAGCTGCAAAACATGTTTATGCAGATAGTTTGTTTCTCTTCTTTTTGCTGCATAAGACATGCTTCTACCGTGCCATCAACTGTCTTACAGTTTACATCTGCTACCAAAATTTCTGCAAAGTATGTAAACGATCGATTGGTAGCCGCTTGTCATGTACTGTCCTGTTATGCTTAATTAGAGAAGAATTGTGTAAAAA ] [-] EMBL CA762377 [ GAGGAGCGGCGAGAATGGGAGCGAAAGAATCTTAAGCCACTTCGTGAGANCAAGCAGAAGTGGAAGTTTATGCAGAAGTATTACCACAAGGGTGCCTTCTTCCAGGAAGGTGCTGATGATGTTATCCAATCAGCTGGTAAAGATGATATTTACGCTCGTGATTTCTCTGCACCAACTGGTGAAGATAAGATGGACAAGAGCATCTTGCCCAAGGTTATGCAAGTTAAGCACTTCGGACGGAGTGGCAGAACGAAGTGGACACATCTTGTTAATGAGGATACTACAGATTGGAATGCCCCGTGGGCTACAAATGGGCCCTTGCGAGCAAAGTTCAATGCAAAAATGGCAGGCATGAATGCTCCTATTGCCAAACCAAAGGGAAGTAAGAAGATGAAAGACTGGGATTCAAAACAGGATGATTAAATGAATACTAGATGAAGTCTGGTACTGCTCTCTTACTTTCATAGGGACAGACTAATGGTAGCTGCAAAACATGTTTATGCAGATAGTTTGTTTCTCTTCTTTTTGCTGCATAAGACATGATTTTACCGTGCCATCAACTGTCTTACAGTTTACATTTGCTACCAAAATTTTTGCAAAGTATGTAAACGATCGATTGGTAGCCGCTTGTCATGTACTGTCCTGTTATGCTTAATTAGAGAAGAATTGTGTAAAAAAAAAAAAAAAAAAAAAA] consensusID : consensus_8250#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 636 fasta sequence [TACTTTCATAGGGACAGACTAATGGTAGCTGCAAAACATGTTTATGCAGATAGTTTGTTTCTCTTCTTTTTGCTGCATAAGACATGCTTCTACCGTGCCATCAACTGTCTTACAGTTTACATCTGCTACCAAAATTTCTGCAAAGTATGTAAACGATCGATTGGTAGCCGCTTGTCATGTACTGTCCTGTTATGCTTAATTAGAGAAGAATTGTGTATATGTTTGTTTCTGTACTTTTGACATATTGCTATGCTTAGAACCTGTCACTGCTTCAGCTTCTGGAGATCTGCACTACAAGTGTTTATGACACTCATTTTACCTTATAGTGCCAACCCACCCTTATCGATCATCATTACACTGATGGGCATTTCATTATGTTGAGATGCCAACACTCAGTGATGTATGATTGTTGGGTGGTCAGTGCGTAGCCATGTTTCCTTGTGAGCATGTGTTTACATGCATGCGTTTTTTGAGTTAGCAAGGTAGTTTGCAAGTGGGCTTTTAACTCAAGGAAAATGCTCGGGTGATTTTATATCATGGAATGCAGTAATGCACATCTTATTTTATTTAATCTCATTTTTCTAGTGATCAGATTGTTTGCATATACAGTTATGCAAGGTAATACAATTTTAATGT] [+] EMBL AK060301 [TACTTTCATAGGGACAGACTAATGGTAGCTGCAAAACATGTTTATGCAGATAGTTTGTTTCTCTTCTTTTTGCTGCATAAGACATGCTTCTACCGTGCCATCAACTGTCTTACAGTTTACATCTGCTACCAAAATTTCTGCAAAGTATGTAAACGATCGATTGGTAGCCGCTTGTCATGTACTGTCCTGTTATGCTTAATTAGAGAAGAATTGTGTATATGTTTGTTTCTGTACTTTTGACATATTGCTATGCTTAGAACCTGTCACTGCTTCAGCTTCTGGAGATCTGCACTACAAGTGTTTATGACACTCATTTTACCTTATAGTGCCAACCCACCCTTATCGATCATCATTACACTGATGGGCATTTCATTATGTTGAGATGCCAACACTCAGTGATGTATGATTGTTGGGTGGTCAGTGCGTAGCCATGTTTCCTTGTGAGCATGTGTTTACATGCATGCGTTTTTTGAGTTAGCAAGGTAGTTTGCAAGTGGGCTTTTAACTCAAGGAAAATGCTCGGGTGATTTTATATCATGGAATGCAGTAATGCACATCTTATTTTATTTAATCTCATTTTTCTAGTGATCAGATTGTTTGCATATACAGTTATGCAAGGTAATACAATTTTAATGT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_8250#0 AATNAGGAAGGAGGAGCATATTGAGAAGACACTCAATGAGGAGGCCAACATTGAGGATGT 60 consensus_8250#1 ------------------------------------------------------------ consensus_8250#0 TGATACAGATGATGAGTTGAATGAAGCAGAGGAGTACGAGTCATGGAAGAATCGAGAAAT 120 consensus_8250#1 ------------------------------------------------------------ consensus_8250#0 AGCTAGAATCAAGAGGGACAGGGAAGAAAGAGATGCAAGGTTGAAGGAGAAGGAGGAGAT 180 consensus_8250#1 ------------------------------------------------------------ consensus_8250#0 TGAGAAGGTGCGGAATATGACCGAGGAGGAGCGGCGAGAATGGGAGCGAAAGAATCCTAA 240 consensus_8250#1 --------------------------------------------------TACTTTCATA 10 * * * consensus_8250#0 GCCACTTCGTGAGAACAAGCAGAAGTGGAAGTTTATGCAGAAGTATTACCACAAGGGTGC 300 consensus_8250#1 GGGACAGACTAATGGTA-GCTGCAAAACATGTTTATGCAGATAGTTTGTTTCTC---TTC 66 * ** * * * ** * * * *********** ** * * * consensus_8250#0 CTTCTTCCAGGAAGGTGCTGATGATGTTATCCAATCAGCTGGTAAAGATGATATTTACGC 360 consensus_8250#1 TTTTTGCTGCATAAGACATGCTTCTACCGTGCCATCAACTGTCTTACAGTTTACATCTGC 126 ** * * * * ** * * * * **** *** * * ** * ** consensus_8250#0 TCGTGATTTCTCTGCACCAACTGGTGAAGATAAGATGGACAAGAGCATCTTGCCCAAGGT 420 consensus_8250#1 TACCAAAATTTCTGCAAAGTATGTAAACGATC-GATTGGTAGCCGCTTGTCATGTACTGT 185 * * * ****** ** * *** *** * * ** * * * ** consensus_8250#0 TATGCAAGTTAAGCACTTCGGACGGAGTGGCAGAACGAAGTGGACACATCTTGTTAATGA 480 consensus_8250#1 CCTGTTA--TGCTTAATTAGAGAAGAATTGTGTATATGTTTGTTTCTGTACTTTTGAC-A 242 ** * * * ** * ** * * * ** * * ** * * consensus_8250#0 GGATACTACAGATTGGAATGCACCGTGGGCTACAAATGGGCCCTTGCGAGCAA-AGTACA 539 consensus_8250#1 TATTGCTAT-GCTTAGAACCTGTCACTGCTT-----CAGCTTCTGGAGATCTGCACTACA 296 * *** * ** *** * * * * ** * ** * * **** consensus_8250#0 ATGCAAAAATGGCAGGCATGAATGCTCCTATTGCCAAACCAAAGGGAAGTAAGAAGATGA 599 consensus_8250#1 A-GTGTTTATGACACTCATTTTACCTTATAGTGCCAACCCACCCTTATCGATCATCATTA 355 * * *** ** *** ** ** ****** *** * * * ** * consensus_8250#0 AAGACTGGGATACAAAACAGGATGATTAAATG--AATACTAGATGAAGTCTGGTACTGCT 657 consensus_8250#1 CA--CTGATGGGCATTTCATTATGTTGAGATGCCAACACTCAGTGATGTATGAT------ 407 * *** ** ** *** * * *** ** *** *** ** ** * consensus_8250#0 CTCTTACTTTCATAGGGACAGACTAATGGTAGCTGCAAAACATGTTTATGCAGATAGTTT 717 consensus_8250#1 -TGTTGGGTGGTCAGTG-CGTAGCCATGTTTCCTTGTGAGCATGTGTTTACA-------T 458 * ** * ** * * * *** * ** * ***** * * ** * consensus_8250#0 GTTTCTCTTCTTTTTGCTGCATAAGACATGATTCTACCGTGCCATCAACTGTCTTACAGT 777 consensus_8250#1 GCATGCGTTTTTTGAGTTA-GCAAGGTAGTTTGCAAGTGGGCTTTTAACTCAAGGAAAAT 517 * * ** *** * * *** * * * * * ** * **** * * * consensus_8250#0 TTACATCTGCTACCAAAATTTCTGCAAAGTATGTAAACG-ATCGATTGGTAGCCGCTTGT 836 consensus_8250#1 GCTCGGGTGATTTTATA--TCATGGAATGCAGTAATGCACATCTTATTTTATTTAATC-T 574 * ** * * * * ** ** * * * * *** * ** * * consensus_8250#0 CATGTACTGTCCTGTTATGCTTAATTAGAGA-AGAATTGTGTAAAAAAAAAAAAAAAAAA 895 consensus_8250#1 CAT-TTTTCTAGTGATCAGATTGTTTGCATATACAGTTATGCAAGGTAATACAATTTTAA 633 *** * * * ** * * ** ** * * * * ** ** ** ** * ** ** consensus_8250#0 AAAA 899 consensus_8250#1 TGT- 636 |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||