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Oryza sativa
cluster # 8254 cluster # 8254       Sequences # 5       consensus # 4


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_8254#0 length = 2214 sequences # 2  
consensus_8254#1 length = 809 sequences # 1  
consensus_8254#2 length = 745 sequences # 1  
consensus_8254#3 length = 662 sequences # 1  

consensusID : consensus_8254#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 2214
fasta sequence
                              [CGCCGCCGTGTACTCGCCTTCCGGCCGCGGCCGGCGTCGCATATCATTTCGCCTCCCTCTGTATCATCACTCCGCTCCACCCCCCACGTAGAACATCTGGCGCCAACTCCTTCTCGTCATGCCCATGCGGTGAAATCAGTTTCGTGGGAAAAAAAACCAAGGCCACTCCTAGCTTTGGCATCGATCGGCCCGGTTGTTTGGGGATCTTGCGCTCAGTAGCGAAGCCACCAGTATGGCGAGGTATGGCGGCCGCCATACCTGCCCACCGGCTGATCGCCTCATCGCATCGGCTGTTCGCCTCCTCTCGTCGACAGTTGACTCGTCTCCTGCCGCGTGCCGCCCGATCTCCGACTCCAGGTCCAGGACACCGCCGGACGCCGTTGCCACGCTGGACGCCGCCACAGTAATCACTCCGAGACACCATTACCCAGATTGCGCCATGGAAGAGGAAGAACCATCTAATAATCGCCGACGCCGACTGCGCCCAATTTCAGAAGCTACCCAGATTGGGAAAAAAATAAAAGTTGACTGCAGATCAGTGTTTTTTTGGTCTAATGGCTAAGCGAATGAATCCATGTCATGGGAAACTGGTCCCCAAGAACAAAAGAGCCATATTACAGTTTGATGACATTCCTGAGGATGTGGTGTTCTTGATAATCCGGTTGCTTTCGCTGACTAATGCTGCGCGTGTCAGCATGGTGTCGCAAAAGTGGCTACAATCTTGGAGGCTCTATCCTAATTTAGAGTTCACCTCGAAGGCGTTGGGTTTGAATAAACGGGTGCACAAACAAGGGAGGAGGGCTAAATTTGTCAGGTGTGTTAACACCATCATAAGGCACCACGCTGGAACAGGGATTAACTCATTCACCTTGAAGCGCAACCTCAACAATCACAAGTACGCACACTATATTGACCGTTGGATTTACTTTGCAGTCCGATCTGGTGCAAATGAACTGACTATTGACCTAAGTCCACGATGGTATGCTCATCCTCGTGATGTCAAATACAGCTTTCCATCCTCTAATGTTGCTGCTCCAGAACCAACCTCTATAGAGCATCTTAAGCTTTGCTTTATGAATTTGAGGCCTTTACCAACTTTTAGTGGCCTAAGAAGCTTGAAGACTCTTGATTTGGCCCTTGTATGTATAACCACAGAAGATTTAGAGAGCTTGTTGAGTTATACCCCTGCTCTACAACAGTTGAAGCTAAGGCAATGTCCAATGCTGGAATACTTGAAGATCACTGATGTACTAGCTAAGCTTGTCTACATTGATATCGTTCCCTGCTTGTGGCTGAAGATTTTGGAGATCCATGCTCAAAATCTTGTTGCGATTAATACTTACAATATCTGTCACCTAAAAATAGTACTGAGTGAAGCATTAGTGTTGAAGGGGGCACACATTGAGTTAGTTCTGTCATCAGATGTTATTGAGTATGCTTTTACTGATCTTGCACCACTCATGCCAGACCTCGAGTCATTGTTCCTGAGTGGCTGTACTGAGATGATTATATCCAGGAGACCTCCAAGCAATAGATTCCATTGCCTGAAGCAATTGGAGTTAAAATTGCAGGATATATCGACGAAATATGATCTTCTATTTCTTGCTAAGTTTGTTGATGCTGCTCCAGTCCTAGAAGCTCTCGTTTTTCATCTGGAAGATATAGAGGAGCCATTTTGTTACATGGAAAAGGAAGCAGAGTTGAGAAGTCTGGAGAAACATTGTCCACATAAAAACCTCAAGTTGGTCAAAATGACTGGATTTTCAGCAGGCCGTTCAAGCCTTGAGCTTGCTCTGTATTTCGTGGAGAACTCACCAGCACTAGAACTCCTGATTCTTGATCATCGGCTTGACAGATCTGTTTGCCGAATCACTTTTGGTGGTGACTTGGATGCGAAATGCTCGAAAGGATATGAACACACTATCTCCAAATATGTTAGCAATGCGATTCCTCGCCGTGTTAGATTATCATATTCCTAATGTAGCACAAACAAGTTGCACGTGGTGCGAGTTGCAGTGCTAGGACTGCTACAGTAGAAATTAAAATTGCAACGACAGCTGTATAAATTGTAAGATGTTTTGGTCTCTCAATCTATGATGTGATCAGGTAATTAAATGACACATGAGTGCAGTAAAAGTGCAAGTATATAGTAGATCAATGGCAATGGGCAATGAGATGTACTACCTCCATTTTTTTTAATAGATGACGCCGTTG]

[+] EMBL AK069909             [CGCCGCCGTGTACTCGCCTTCCGGCCGCGGCCGGCGTCGCATATCATTTCGCCTCCCTCTGTATCATCACTCCGCTCCACCCCCCACGTAGAACATCTGGCGCCAACTCCTTCTCGTCATGCCCATGCGGTGAAATCAGTTTCGTGGGAAAAAAAACCAAGGCCACTCCTAGCTTTGGCATCGATCGGCCCGGTTGTTTGGGGATCTTGCGCTCAGTAGCGAAGCCACCAGTATGGCGAGGTATGGCGGCCGCCATACCTGCCCACCGGCTGATCGCCTCATCGCATCGGCTGTTCGCCTCCTCTCGTCGACAGTTGACTCGTCTCCTGCCGCGTGCCGCCCGATCTCCGACTCCAGGTCCAGGACACCGCCGGACGCCGTTGCCACGCTGGACGCCGCCACAGTAATCACTCCGAGACACCATTACCCAGATTGCGCCATGGAAGAGGAAGAACCATCTAATAATCGCCGACGCCGACTGCGCCCAATTTCAGAAGCTACCCAGATTGGGAAAAAAATAAAAGTTGACTGCAGATCAGTGTTTTTTTGGTCTAATGGCTAAGCGAATGAATCCATGTCATGGGAAACTGGTCCCCAAGAACAAAAGAGCCATATTACAGTTTGATGACATTCCTGAGGATGTGGTGTTCTTGATAATCCGGTTGCTTTCGCTGACTAATGCTGCGCGTGTCAGCATGGTGTCGCAAAAGTGGCTACAATCTTGGAGGCTCTATCCTAATTTAGAGTTCACCTCGAAGGCGTTGGGTTTGAATAAACGGGTGCACAAACAAGGGAGGAGGGCTAAATTTGTCAGGTGTGTTAACACCATCATAAGGCACCACGCTGGAACAGGGATTAACTCATTCACCTTGAAGCGCAACCTCAACAATCACAAGTACGCACACTATATTGACCGTTGGATTTACTTTGCAGTCCGATCTGGTGCAAATGAACTGACTATTGACCTAAGTCCACGATGGTATGCTCATCCTCGTGATGTCAAATACAGCTTTCCATCCTCTAATGTTGCTGCTCCAGAACCAACCTCTATAGAGCATCTTAAGCTTTGCTTTATGAATTTGAGGCCTTTACCAACTTTTAGTGGCCTAAGAAGCTTGAAGACTCTTGATTTGGCCCTTGTATGTATAACCACAGAAGATTTAGAGAGCTTGTTGAGTTATACCCCTGCTCTACAACAGTTGAAGCTAAGGCAATGTCCAATGCTGGAATACTTGAAGATCACTGATGTACTAGCTAAGCTTGTCTACATTGATATCGTTCCCTGCTTGTGGCTGAAGATTTTGGAGATCCATGCTCAAAATCTTGTTGCGATTAATACTTACAATATCTGTCACCTAAAAATAGTACTGAGTGAAGCATTAGTGTTGAAGGGGGCACACATTGAGTTAGTTCTGTCATCAGATGTTATTGAGTATGCTTTTACTGATCTTGCACCACTCATGCCAGACCTCGAGTCATTGTTCCTGAGTGGCTGTACTGAGATGATTATATCCAGGAGACCTCCAAGCAATAGATTCCATTGCCTGAAGCAATTGGAGTTAAAATTGCAGGATATATCGACGAAATATGATCTTCTATTTCTTGCTAAGTTTGTTGATGCTGCTCCAGTCCTAGAAGCTCTCGTTTTTCATCTGGAAGATATAGAGGAGCCATTTTGTTACATGGAAAAGGAAGCAGAGTTGAGAAGTCTGGAGAAACATTGTCCACATAAAAACCTCAAGTTGGTCAAAATGACTGGATTTTCAGCAGGCCGTTCAAGCCTTGAGCTTGCTCTGTATTTCGTGGAGAACTCACCAGCACTAGAACTCCTGATTCTTGATCATCGGCTTGACAGATCTGTTTGCCGAATCACTTTTGGTGGTGACTTGGATGCGAAATGCTCGAAAGGATATGAACACACTATCTCCAAATATGTTAGCAATGCGATTCCTCGCCGTGTTAGATTATCATATTCCTAATGTAGCACAAACAAGTTGCACGTGGTGCGAGTTGCAGTGCTAGGACTGCTACAGTAGAAATTAAAATTGCAACGACAGCTGTATAAATTGTAAGATGTTTTGGTCTCTCAATCTATGATGTGATCAGGTAATTAAATGACACATGAGTGCAGTAAAAGTGCAAGTATATAGTAGATCAATGGCAATGGGCAATGAGATGTACTACCTCCATTTTTTTTAATAGATGACGCCGTTG]
[-] EMBL CB675512             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                           ATCCATGCTCAAAATCTTGTTGCGATTAATACTTACAATATCTGTCACCTAAAAATAGTACTGAGTGAAGCATTAGTGTTGAAGGGGGCACACATTGAGTTAGTTCTGTCATCAGATGTTATTGAGTATGCTTTTACTGATCTTGCACCACTCATGCCAGACCTCGAGTCATTGTTCCTGAGTGGCTGTACTGAGATGATTATATCCAGGAGACCTCCAAGCAATAGATTCCATTGCCTGAAGCAATTGGAGTTAAAATTGCAGGATATATCGACGAAATATGATCTTCTATTTCTTGCTAAGTTTGTTGATGCTGCTCCAGTCCTAGAAGCTCTCGTTTTTCATCTGGAAGATATAGAGGAGCCATTTTGTTACATGGAAAAGGAAGCAGAGTTGAGAAGTCTGGAGAAACATTGTCCACATAAAAACCTCAAGTTGGTCAAAATGACTGGATTTTCAGCAGGCCGTTCAAGCCTTGAGCTTGCTCTGTATTTCGTGGAGAACTCACCAGCACTAGAACTCCTGATTCTTGATCATCGGCTTGACAGATCTGTTTGCCGAATCACTTTTGGTGGTGACTTGGATGCGAAATGCTCGAAAGGATATGAACACACTATCTCCAAATATGTTAGCAATGCGATTCCTCGCCGTGTTAGATTATCATATTCCTAATGTAGCACAAACAAGTTGCACGTGGTGCGAGTTGCAGTGCTAGGACTGCTACAGTAGAAATTAAAATTGCAACGACAGCTGTATAAATTGTAAGATGTTTTGGTCTCTCAATCTATGATGTGATCAGGTAATTAAATG                                                                                                 ]


>consensus_8254#0 CGCCGCCGTGTACTCGCCTTCCGGCCGCGGCCGGCGTCGCATATCATTTCGCCTCCCTCT GTATCATCACTCCGCTCCACCCCCCACGTAGAACATCTGGCGCCAACTCCTTCTCGTCAT GCCCATGCGGTGAAATCAGTTTCGTGGGAAAAAAAACCAAGGCCACTCCTAGCTTTGGCA TCGATCGGCCCGGTTGTTTGGGGATCTTGCGCTCAGTAGCGAAGCCACCAGTATGGCGAG GTATGGCGGCCGCCATACCTGCCCACCGGCTGATCGCCTCATCGCATCGGCTGTTCGCCT CCTCTCGTCGACAGTTGACTCGTCTCCTGCCGCGTGCCGCCCGATCTCCGACTCCAGGTC CAGGACACCGCCGGACGCCGTTGCCACGCTGGACGCCGCCACAGTAATCACTCCGAGACA CCATTACCCAGATTGCGCCATGGAAGAGGAAGAACCATCTAATAATCGCCGACGCCGACT GCGCCCAATTTCAGAAGCTACCCAGATTGGGAAAAAAATAAAAGTTGACTGCAGATCAGT GTTTTTTTGGTCTAATGGCTAAGCGAATGAATCCATGTCATGGGAAACTGGTCCCCAAGA ACAAAAGAGCCATATTACAGTTTGATGACATTCCTGAGGATGTGGTGTTCTTGATAATCC GGTTGCTTTCGCTGACTAATGCTGCGCGTGTCAGCATGGTGTCGCAAAAGTGGCTACAAT CTTGGAGGCTCTATCCTAATTTAGAGTTCACCTCGAAGGCGTTGGGTTTGAATAAACGGG TGCACAAACAAGGGAGGAGGGCTAAATTTGTCAGGTGTGTTAACACCATCATAAGGCACC ACGCTGGAACAGGGATTAACTCATTCACCTTGAAGCGCAACCTCAACAATCACAAGTACG CACACTATATTGACCGTTGGATTTACTTTGCAGTCCGATCTGGTGCAAATGAACTGACTA TTGACCTAAGTCCACGATGGTATGCTCATCCTCGTGATGTCAAATACAGCTTTCCATCCT CTAATGTTGCTGCTCCAGAACCAACCTCTATAGAGCATCTTAAGCTTTGCTTTATGAATT TGAGGCCTTTACCAACTTTTAGTGGCCTAAGAAGCTTGAAGACTCTTGATTTGGCCCTTG TATGTATAACCACAGAAGATTTAGAGAGCTTGTTGAGTTATACCCCTGCTCTACAACAGT TGAAGCTAAGGCAATGTCCAATGCTGGAATACTTGAAGATCACTGATGTACTAGCTAAGC TTGTCTACATTGATATCGTTCCCTGCTTGTGGCTGAAGATTTTGGAGATCCATGCTCAAA ATCTTGTTGCGATTAATACTTACAATATCTGTCACCTAAAAATAGTACTGAGTGAAGCAT TAGTGTTGAAGGGGGCACACATTGAGTTAGTTCTGTCATCAGATGTTATTGAGTATGCTT TTACTGATCTTGCACCACTCATGCCAGACCTCGAGTCATTGTTCCTGAGTGGCTGTACTG AGATGATTATATCCAGGAGACCTCCAAGCAATAGATTCCATTGCCTGAAGCAATTGGAGT TAAAATTGCAGGATATATCGACGAAATATGATCTTCTATTTCTTGCTAAGTTTGTTGATG CTGCTCCAGTCCTAGAAGCTCTCGTTTTTCATCTGGAAGATATAGAGGAGCCATTTTGTT ACATGGAAAAGGAAGCAGAGTTGAGAAGTCTGGAGAAACATTGTCCACATAAAAACCTCA AGTTGGTCAAAATGACTGGATTTTCAGCAGGCCGTTCAAGCCTTGAGCTTGCTCTGTATT TCGTGGAGAACTCACCAGCACTAGAACTCCTGATTCTTGATCATCGGCTTGACAGATCTG TTTGCCGAATCACTTTTGGTGGTGACTTGGATGCGAAATGCTCGAAAGGATATGAACACA CTATCTCCAAATATGTTAGCAATGCGATTCCTCGCCGTGTTAGATTATCATATTCCTAAT GTAGCACAAACAAGTTGCACGTGGTGCGAGTTGCAGTGCTAGGACTGCTACAGTAGAAAT TAAAATTGCAACGACAGCTGTATAAATTGTAAGATGTTTTGGTCTCTCAATCTATGATGT GATCAGGTAATTAAATGACACATGAGTGCAGTAAAAGTGCAAGTATATAGTAGATCAATG GCAATGGGCAATGAGATGTACTACCTCCATTTTTTTTAATAGATGACGCCGTTG



consensusID : consensus_8254#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 809
fasta sequence
                              [TCCATTATTTTATTATATATGTATGTTTTCTTATACAAACTAGAGTACTAGACTAGTACTTAGTCCGTAGTAAGTTCGCCATAGGTGAATTTTTATCCTGGCTTCGCCACTGCTTGCGCTGCTTCTGTTTGTATCTAGAGGGGATCGATCGAATACTTGGGAGACTCAAATCCACAAATTTCGTCAGCATTGCGTGCTGCTGCTGCAATACTGTGATCAGTGTTTTTTTGGTCTAATGGCTAAGCGAATGAATCCATGTCATGGGAAACTGGTCCCCAAGAACAAAAGAGCCATATTACAGTTTGATGACATTCCTGAGGATGTGGTGTTCTTGATAATCCGGTTGCTTTCGCTGACTAATGCTGCGCGTGTCAGCATGGTGTCGCAAAAGTGGCTACAATCTTGGAGGCTCTATCCTAATTTAGAGTTCACCTCGAAGGCGTTGGGTTTGAATAAACGGGTGCACAAACAAGGGAGGAGGGCTAAATTTGTCAGGTGTGTTAACACCATCATAAGGCACCACGCTGGAACAGGGATTAACTCATTCACCTTGAAGCGCAACCTCAACAATCACAACTTTCCATCCTCTAATGTTGCTGCTCCAGAACCAACCTCTATAGAGCATCTTAAGCTTTGCTTTATGAATTTGAGGCCTTTACCAACTTTTAGTGGCCTAAGAAGCTTGAAGACTCTTGATTTGGCCCTTGTATGTATAACCACAGAAGATTTAGAGAGCTTGTTGAGTTATACCCCTGCTCTACAACAGTTGAAGCTAAGGCAATGTCCNATGCTGGAATACTTGAAGATCA]

[+] EMBL CB675511             [TCCATTATTTTATTATATATGTATGTTTTCTTATACAAACTAGAGTACTAGACTAGTACTTAGTCCGTAGTAAGTTCGCCATAGGTGAATTTTTATCCTGGCTTCGCCACTGCTTGCGCTGCTTCTGTTTGTATCTAGAGGGGATCGATCGAATACTTGGGAGACTCAAATCCACAAATTTCGTCAGCATTGCGTGCTGCTGCTGCAATACTGTGATCAGTGTTTTTTTGGTCTAATGGCTAAGCGAATGAATCCATGTCATGGGAAACTGGTCCCCAAGAACAAAAGAGCCATATTACAGTTTGATGACATTCCTGAGGATGTGGTGTTCTTGATAATCCGGTTGCTTTCGCTGACTAATGCTGCGCGTGTCAGCATGGTGTCGCAAAAGTGGCTACAATCTTGGAGGCTCTATCCTAATTTAGAGTTCACCTCGAAGGCGTTGGGTTTGAATAAACGGGTGCACAAACAAGGGAGGAGGGCTAAATTTGTCAGGTGTGTTAACACCATCATAAGGCACCACGCTGGAACAGGGATTAACTCATTCACCTTGAAGCGCAACCTCAACAATCACAACTTTCCATCCTCTAATGTTGCTGCTCCAGAACCAACCTCTATAGAGCATCTTAAGCTTTGCTTTATGAATTTGAGGCCTTTACCAACTTTTAGTGGCCTAAGAAGCTTGAAGACTCTTGATTTGGCCCTTGTATGTATAACCACAGAAGATTTAGAGAGCTTGTTGAGTTATACCCCTGCTCTACAACAGTTGAAGCTAAGGCAATGTCCNATGCTGGAATACTTGAAGATCA]


>consensus_8254#1 TCCATTATTTTATTATATATGTATGTTTTCTTATACAAACTAGAGTACTAGACTAGTACT TAGTCCGTAGTAAGTTCGCCATAGGTGAATTTTTATCCTGGCTTCGCCACTGCTTGCGCT GCTTCTGTTTGTATCTAGAGGGGATCGATCGAATACTTGGGAGACTCAAATCCACAAATT TCGTCAGCATTGCGTGCTGCTGCTGCAATACTGTGATCAGTGTTTTTTTGGTCTAATGGC TAAGCGAATGAATCCATGTCATGGGAAACTGGTCCCCAAGAACAAAAGAGCCATATTACA GTTTGATGACATTCCTGAGGATGTGGTGTTCTTGATAATCCGGTTGCTTTCGCTGACTAA TGCTGCGCGTGTCAGCATGGTGTCGCAAAAGTGGCTACAATCTTGGAGGCTCTATCCTAA TTTAGAGTTCACCTCGAAGGCGTTGGGTTTGAATAAACGGGTGCACAAACAAGGGAGGAG GGCTAAATTTGTCAGGTGTGTTAACACCATCATAAGGCACCACGCTGGAACAGGGATTAA CTCATTCACCTTGAAGCGCAACCTCAACAATCACAACTTTCCATCCTCTAATGTTGCTGC TCCAGAACCAACCTCTATAGAGCATCTTAAGCTTTGCTTTATGAATTTGAGGCCTTTACC AACTTTTAGTGGCCTAAGAAGCTTGAAGACTCTTGATTTGGCCCTTGTATGTATAACCAC AGAAGATTTAGAGAGCTTGTTGAGTTATACCCCTGCTCTACAACAGTTGAAGCTAAGGCA ATGTCCNATGCTGGAATACTTGAAGATCA



consensusID : consensus_8254#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 745
fasta sequence
                              [TAACCCAAATCTACAAACCCCTCCCCCCCTTCCTCTCTCTCGTCCGTTCCGGCGCCGCCGTGTACTTGCCTTCCGGCCGCGGCCGGCGTCGCATATCATTTCGCCTCCCTCTGTATCATCACTCCGCTCCACCCCCCACGTAGAACATCTGGCGCCAACTCCTTCTCGTCATGCCCATGCGGTGAAATCAGTTTCGTGAAGGGAAAAAAAAACCAAGGCCACTCCTAGCTTTGGCATCGATCGGTCCGGTTGTTTGGGGATCTTGCGCTCAGTAGCGAAGCCACCAGTATGGCGAGGTATGGCGGCCGCCATACCTGCCCACCGGCTGATCGCCTCCTCTCGTCGACAGTTGACTCGTCTCCTGCCGCGTGCCGCCCGATCTCCGACTCCAGGTCCAGGACACCGCCGGACGCCGTTGCCACGCTGGACGCCGCCACATTACCCAGATTGCGCCATGGAAGAGGAAGAACCATCTAATAATCGCCGACGCTGACTGCGCCCAATTTCAGAAGCTACCCAGATTGGGAAAAAAATAAAAGAGGGGATCGATCGAATACTTGGGAGACTCAAATCCACGAATTTCGTCAGCATTGCGTGCTGCTGCTGCAATACTGTGATCAGTGTTTTTTTGGTCTAATGGCTAAGCGAATGAATCCATGTCATGGGAAACTGGTCCCCAAGAACAAAAGAGCCATATTACAGTTTGATGACATTCCTGAGGATGTGGGTTCTTGATAATCCGGTT]

[+] EMBL CB627243             [TAACCCAAATCTACAAACCCCTCCCCCCCTTCCTCTCTCTCGTCCGTTCCGGCGCCGCCGTGTACTTGCCTTCCGGCCGCGGCCGGCGTCGCATATCATTTCGCCTCCCTCTGTATCATCACTCCGCTCCACCCCCCACGTAGAACATCTGGCGCCAACTCCTTCTCGTCATGCCCATGCGGTGAAATCAGTTTCGTGAAGGGAAAAAAAAACCAAGGCCACTCCTAGCTTTGGCATCGATCGGTCCGGTTGTTTGGGGATCTTGCGCTCAGTAGCGAAGCCACCAGTATGGCGAGGTATGGCGGCCGCCATACCTGCCCACCGGCTGATCGCCTCCTCTCGTCGACAGTTGACTCGTCTCCTGCCGCGTGCCGCCCGATCTCCGACTCCAGGTCCAGGACACCGCCGGACGCCGTTGCCACGCTGGACGCCGCCACATTACCCAGATTGCGCCATGGAAGAGGAAGAACCATCTAATAATCGCCGACGCTGACTGCGCCCAATTTCAGAAGCTACCCAGATTGGGAAAAAAATAAAAGAGGGGATCGATCGAATACTTGGGAGACTCAAATCCACGAATTTCGTCAGCATTGCGTGCTGCTGCTGCAATACTGTGATCAGTGTTTTTTTGGTCTAATGGCTAAGCGAATGAATCCATGTCATGGGAAACTGGTCCCCAAGAACAAAAGAGCCATATTACAGTTTGATGACATTCCTGAGGATGTGGGTTCTTGATAATCCGGTT]


>consensus_8254#2 TAACCCAAATCTACAAACCCCTCCCCCCCTTCCTCTCTCTCGTCCGTTCCGGCGCCGCCG TGTACTTGCCTTCCGGCCGCGGCCGGCGTCGCATATCATTTCGCCTCCCTCTGTATCATC ACTCCGCTCCACCCCCCACGTAGAACATCTGGCGCCAACTCCTTCTCGTCATGCCCATGC GGTGAAATCAGTTTCGTGAAGGGAAAAAAAAACCAAGGCCACTCCTAGCTTTGGCATCGA TCGGTCCGGTTGTTTGGGGATCTTGCGCTCAGTAGCGAAGCCACCAGTATGGCGAGGTAT GGCGGCCGCCATACCTGCCCACCGGCTGATCGCCTCCTCTCGTCGACAGTTGACTCGTCT CCTGCCGCGTGCCGCCCGATCTCCGACTCCAGGTCCAGGACACCGCCGGACGCCGTTGCC ACGCTGGACGCCGCCACATTACCCAGATTGCGCCATGGAAGAGGAAGAACCATCTAATAA TCGCCGACGCTGACTGCGCCCAATTTCAGAAGCTACCCAGATTGGGAAAAAAATAAAAGA GGGGATCGATCGAATACTTGGGAGACTCAAATCCACGAATTTCGTCAGCATTGCGTGCTG CTGCTGCAATACTGTGATCAGTGTTTTTTTGGTCTAATGGCTAAGCGAATGAATCCATGT CATGGGAAACTGGTCCCCAAGAACAAAAGAGCCATATTACAGTTTGATGACATTCCTGAG GATGTGGGTTCTTGATAATCCGGTT



consensusID : consensus_8254#3
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 662
fasta sequence
                              [ACTCGCTTTCCGGCCGCGGCCGGCGTCGCATATCATTTCGCCTCCCTCTGTATCATCACTCCGCTCCACCCCCCACGTAGAACATCTGGCGCCAACTCCTTCTCGTCATGCCCATGCGGTGAAATCAGTTTCGTGAAGGGAAAAAAAAACCAAGGCCACTCCTAGCTTTGGCATCGATCGGTCCGGTTGTTTGGGGATCTTGCGCTCAGTAGCGAAGCCACCAGTATGGCGAGGTATGGCGGCCGCCATACCTGCCCACCGGCTGATCGCCTCCTCTCGTCGACAGTTGACTCGTCTCCTGCCGCGTGCCGCCCGATCTCCGACTCCAGGTCCAGGACACCGCCGGACGCCGTTGCCACGCTGGACGCCGCCACAGTAATCACTCCGAGACACCATTACCCAGATTGCGCCATGGAAGAGGAAGAACCATCTAATAATCGCCGACGCTGACTGCGCCCAATTTCAGAAGCTACCCAGATTGGGAAAAAAATAAAAGGTGAGAATTTAATCTACCCTTGATGGTACTGTTATTTATTCACTTTAATGTATCTCTTATTTTAAATTTTTATGTTTGGTAGTTGTCAGTATAAAGAGATTTTTTAGCAGAAGCACTGCTAATATATCAGGACGAGATGGAAATGAAAATATAGAAGCAAGGAGAT]

[+] EMBL CB632071             [ACTCGCTTTCCGGCCGCGGCCGGCGTCGCATATCATTTCGCCTCCCTCTGTATCATCACTCCGCTCCACCCCCCACGTAGAACATCTGGCGCCAACTCCTTCTCGTCATGCCCATGCGGTGAAATCAGTTTCGTGAAGGGAAAAAAAAACCAAGGCCACTCCTAGCTTTGGCATCGATCGGTCCGGTTGTTTGGGGATCTTGCGCTCAGTAGCGAAGCCACCAGTATGGCGAGGTATGGCGGCCGCCATACCTGCCCACCGGCTGATCGCCTCCTCTCGTCGACAGTTGACTCGTCTCCTGCCGCGTGCCGCCCGATCTCCGACTCCAGGTCCAGGACACCGCCGGACGCCGTTGCCACGCTGGACGCCGCCACAGTAATCACTCCGAGACACCATTACCCAGATTGCGCCATGGAAGAGGAAGAACCATCTAATAATCGCCGACGCTGACTGCGCCCAATTTCAGAAGCTACCCAGATTGGGAAAAAAATAAAAGGTGAGAATTTAATCTACCCTTGATGGTACTGTTATTTATTCACTTTAATGTATCTCTTATTTTAAATTTTTATGTTTGGTAGTTGTCAGTATAAAGAGATTTTTTAGCAGAAGCACTGCTAATATATCAGGACGAGATGGAAATGAAAATATAGAAGCAAGGAGAT]


>consensus_8254#3 ACTCGCTTTCCGGCCGCGGCCGGCGTCGCATATCATTTCGCCTCCCTCTGTATCATCACT CCGCTCCACCCCCCACGTAGAACATCTGGCGCCAACTCCTTCTCGTCATGCCCATGCGGT GAAATCAGTTTCGTGAAGGGAAAAAAAAACCAAGGCCACTCCTAGCTTTGGCATCGATCG GTCCGGTTGTTTGGGGATCTTGCGCTCAGTAGCGAAGCCACCAGTATGGCGAGGTATGGC GGCCGCCATACCTGCCCACCGGCTGATCGCCTCCTCTCGTCGACAGTTGACTCGTCTCCT GCCGCGTGCCGCCCGATCTCCGACTCCAGGTCCAGGACACCGCCGGACGCCGTTGCCACG CTGGACGCCGCCACAGTAATCACTCCGAGACACCATTACCCAGATTGCGCCATGGAAGAG GAAGAACCATCTAATAATCGCCGACGCTGACTGCGCCCAATTTCAGAAGCTACCCAGATT GGGAAAAAAATAAAAGGTGAGAATTTAATCTACCCTTGATGGTACTGTTATTTATTCACT TTAATGTATCTCTTATTTTAAATTTTTATGTTTGGTAGTTGTCAGTATAAAGAGATTTTT TAGCAGAAGCACTGCTAATATATCAGGACGAGATGGAAATGAAAATATAGAAGCAAGGAG AT



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_8254#2      TAACCCAAATCTACAAACCCCTCCCCCCCTTCCTCTCTCTCGTCCGTTCCGGCGCCGCCG 60
consensus_8254#3      ------------------------------------------------------------
consensus_8254#0      ----------------------------------------------------CGCCGCCG 8
consensus_8254#1      ------------TCCATTATTTTATTATATATGTATGTTTTCTTATACAAACTAGAGTAC 48
                                                                                  

consensus_8254#2      TGTACTTGCCTTCCGGCCGCGGCCGG--CGTCGCATATCATTTCGCCTCCCT-CTGTATC 117
consensus_8254#3      ---ACTCGCTTTCCGGCCGCGGCCGG--CGTCGCATATCATTTCGCCTCCCT-CTGTATC 54
consensus_8254#0      TGTACTCGCCTTCCGGCCGCGGCCGG--CGTCGCATATCATTTCGCCTCCCT-CTGTATC 65
consensus_8254#1      TAGACTAGTACTTAGTCCGTAGTAAGTTCGCCATAGGTGAATTTTTATCCTGGCTTCGCC 108
                         *** *   *  * ***  *   *  ** *  *  * * **    ***   **    *

consensus_8254#2      ATCACT----CCGCTCCACCCCCCACGTAGAACATCTGGCGCCAACTCCTTCTCG--TCA 171
consensus_8254#3      ATCACT----CCGCTCCACCCCCCACGTAGAACATCTGGCGCCAACTCCTTCTCG--TCA 108
consensus_8254#0      ATCACT----CCGCTCCACCCCCCACGTAGAACATCTGGCGCCAACTCCTTCTCG--TCA 119
consensus_8254#1      ACTGCTTGCGCTGCTTCTGTTTGTATCTAGAGGGGATCGATCGAATACTTGGGAGACTCA 168
                      *   **    * *** *       *  ****     * *  * **  * *    *  ***

consensus_8254#2      TGCCCATGCGGTGAAATCAG--TTTCGTGAAGGGAAAAAAAAACCAAGGCCA-----CTC 224
consensus_8254#3      TGCCCATGCGGTGAAATCAG--TTTCGTGAAGGGAAAAAAAAACCAAGGCCA-----CTC 161
consensus_8254#0      TGCCCATGCGGTGAAATCAG--TTTCGTG----GGAAAAAAAACCAAGGCCA-----CTC 168
consensus_8254#1      AATCCACA-AATTTCGTCAGCATTGCGTGCTGCTGCTGCAATACTGTGATCAGTGTTTTT 227
                         ***     *    ****  ** ****          ** **   *  **      * 

consensus_8254#2      CTAGCTT--TGGC--ATCGATCGGTCCGGTTGTTTGGGGATCTTGCGCTCAGTAGCGAA- 279
consensus_8254#3      CTAGCTT--TGGC--ATCGATCGGTCCGGTTGTTTGGGGATCTTGCGCTCAGTAGCGAA- 216
consensus_8254#0      CTAGCTT--TGGC--ATCGATCGGCCCGGTTGTTTGGGGATCTTGCGCTCAGTAGCGAA- 223
consensus_8254#1      TTGGTCTAATGGCTAAGCGAATGAATCCATGTCATGGGAAACTGGTCCCCAAGAACAAAA 287
                       * *  *  ****  * ***  *   *  *    **** * ** *  * **  * * ** 

consensus_8254#2      --GCCAC----CAGTATGGCGAGGTA--TGGCGGC-CGCCATACCTGCCCA-CCGGCTGA 329
consensus_8254#3      --GCCAC----CAGTATGGCGAGGTA--TGGCGGC-CGCCATACCTGCCCA-CCGGCTGA 266
consensus_8254#0      --GCCAC----CAGTATGGCGAGGTA--TGGCGGC-CGCCATACCTGCCCA-CCGGCTGA 273
consensus_8254#1      GAGCCATATTACAGTTTGATGACATTCCTGAGGATGTGGTGTTCTTGATAATCCGGTTGC 347
                        ****     **** **  **  *   **  *    *   * * **   * **** ** 

consensus_8254#2      TCGCCTC---------------------C-TCTCGTCG-ACAGTTGACTCGTCTCCTGCC 366
consensus_8254#3      TCGCCTC---------------------C-TCTCGTCG-ACAGTTGACTCGTCTCCTGCC 303
consensus_8254#0      TCGCCTCATCGCATCGGCTGTTCGCCTCC-TCTCGTCG-ACAGTTGACTCGTCTCCTGCC 331
consensus_8254#1      TTTCGCTGACTAATGCTGCGCGTGTCAGCATGGTGTCGCAAAAGTGGCTACAATCTTGGA 407
                      *  *                        * *   **** * *  ** **    ** **  

consensus_8254#2      GCGTGCCGCCCGATCTCCGACTCCAGGTCCAGGACACCG---CCGGACG--CCGTTGCC- 420
consensus_8254#3      GCGTGCCGCCCGATCTCCGACTCCAGGTCCAGGACACCG---CCGGACG--CCGTTGCC- 357
consensus_8254#0      GCGTGCCGCCCGATCTCCGACTCCAGGTCCAGGACACCG---CCGGACG--CCGTTGCC- 385
consensus_8254#1      G-GCTCTATCCTAATTTAGAGTTCACCTCGAAGGCGTTGGGTTTGAATAAACGGGTGCAC 466
                      * *  *   ** *  *  ** * **  ** * * *   *     * *    * * ***  

consensus_8254#2      --ACGCTGGACGCCGCCACA--------------------TTACCCAGATTGCGCCATGG 458
consensus_8254#3      --ACGCTGGACGCCGCCACAGTAATCACTCCGAGACACCATTACCCAGATTGCGCCATGG 415
consensus_8254#0      --ACGCTGGACGCCGCCACAGTAATCACTCCGAGACACCATTACCCAGATTGCGCCATGG 443
consensus_8254#1      AAACAAGGGAGGAGGGCTAAATTTGTCAGGTGTGTTAACACCATC-ATAAGGCACCACGC 525
                        **   *** *  * *  *                      * * * *  ** *** * 

consensus_8254#2      AAGAGGAAGAACCATCTAATAATCGCCGACGC-TGACTGCGCC-----CAATTT--CAGA 510
consensus_8254#3      AAGAGGAAGAACCATCTAATAATCGCCGACGC-TGACTGCGCC-----CAATTT--CAGA 467
consensus_8254#0      AAGAGGAAGAACCATCTAATAATCGCCGACGC-CGACTGCGCC-----CAATTT--CAGA 495
consensus_8254#1      TGGAACAGGGATTAACTCATTCACCTTGAAGCGCAACCTCAACAATCACAACTTTCCATC 585
                        **  * * *  * ** **   *   ** **   **  *  *     *** **  **  

consensus_8254#2      AGCTACCCAGATTGGGAAAAAAATAAAAGAGG-GG---A--TCGATCGAATACTTGGGAG 564
consensus_8254#3      AGCTACCCAGATTGGGAAAAAAATAAAAGGTG-AG---AATTTAATCTACCCTTGATGGT 523
consensus_8254#0      AGCTACCCAGATTGGGAAAAAAATAAAAGTTG-ACTGCAGATCAGTGTTTTTTTGGTCTA 554
consensus_8254#1      CTCTAATGTTGCTGCTCCAGAACCAACCTCTATAGAGCATCTTAAGCTTTGCTTTATGAA 645
                        ***       **    * **  **            *  *           *      

consensus_8254#2      ACTCAAA--TCCACGAATTTC-GTCAGCATTGCGTGCTGCTGCTGCAATACTGTGATCAG 621
consensus_8254#3      ACTGTTA--TTTATTCACTTT-AAT-GTATCTCTTATT----TTAAATTTTTATGTTTGG 575
consensus_8254#0      ATGGCTA--AGCGAATGAATC-CATGTCATGGGAAACTGGT-CCCCAAGAACAAAAGAGC 610
consensus_8254#1      TTTGAGGCCTTTACCAACTTTTAGTGGCCTAAGAAGCT----TGAAGACTCTTGATTTGG 701
                                         *         *       *                      

consensus_8254#2      TGTTTTTTTGGTCTA--ATGGCTAAGCGAATGAATCCATGTCATGGGAAACTGGTCCC-- 677
consensus_8254#3      TAGTTGTCAGTATAA--AGAGATTTTTTAGCAGAAGCACTGCTAATATATCAGGAC---- 629
consensus_8254#0      CATATTACAGTTTGA--TGACATTCCTGAGGATGTGGTGTTCTTGATAATCCGGTTGCTT 668
consensus_8254#1      CCCTTGTATGTATAACCACAGAAGATTTAGAGAGCTTGTTG-AGTTATACCCCTGCTCTA 760
                          *    *    *             *                   * *         

consensus_8254#2      -CAAGAACAAAAGAGCCATATTACAGTTTGATGACATTCCTGAGGATGTGGGTTCTTGAT 736
consensus_8254#3      --GAGATGGAAATGAAAATATAGAAGCAAGGAGAT------------------------- 662
consensus_8254#0      TCGCTGACTAATGCTGCGCGTGTCAGCATGGTGTCGCAAAAGTGGCTACAATCTTGGAGG 728
consensus_8254#1      CAACAGTTGAAGCTAAGGCAATGTCCNATGCTGGAATACTTGAAGATCA----------- 809
                               **                  *  *                           

consensus_8254#2      AATCCGGTT--------------------------------------------------- 745
consensus_8254#3      ------------------------------------------------------------
consensus_8254#0      CTCTATCCTAATTTAGAGTTCACCTCGAAGGCGTTGGGTTTGAATAAACGGGTGCACAAA 788
consensus_8254#1      ------------------------------------------------------------
                                                                                  

consensus_8254#2      ------------------------------------------------------------
consensus_8254#3      ------------------------------------------------------------
consensus_8254#0      CAAGGGAGGAGGGCTAAATTTGTCAGGTGTGTTAACACCATCATAAGGCACCACGCTGGA 848
consensus_8254#1      ------------------------------------------------------------
                                                                                  

consensus_8254#2      ------------------------------------------------------------
consensus_8254#3      ------------------------------------------------------------
consensus_8254#0      ACAGGGATTAACTCATTCACCTTGAAGCGCAACCTCAACAATCACAAGTACGCACACTAT 908
consensus_8254#1      ------------------------------------------------------------
                                                                                  

consensus_8254#2      ------------------------------------------------------------
consensus_8254#3      ------------------------------------------------------------
consensus_8254#0      ATTGACCGTTGGATTTACTTTGCAGTCCGATCTGGTGCAAATGAACTGACTATTGACCTA 968
consensus_8254#1      ------------------------------------------------------------
                                                                                  

consensus_8254#2      ------------------------------------------------------------
consensus_8254#3      ------------------------------------------------------------
consensus_8254#0      AGTCCACGATGGTATGCTCATCCTCGTGATGTCAAATACAGCTTTCCATCCTCTAATGTT 1028
consensus_8254#1      ------------------------------------------------------------
                                                                                  

consensus_8254#2      ------------------------------------------------------------
consensus_8254#3      ------------------------------------------------------------
consensus_8254#0      GCTGCTCCAGAACCAACCTCTATAGAGCATCTTAAGCTTTGCTTTATGAATTTGAGGCCT 1088
consensus_8254#1      ------------------------------------------------------------
                                                                                  

consensus_8254#2      ------------------------------------------------------------
consensus_8254#3      ------------------------------------------------------------
consensus_8254#0      TTACCAACTTTTAGTGGCCTAAGAAGCTTGAAGACTCTTGATTTGGCCCTTGTATGTATA 1148
consensus_8254#1      ------------------------------------------------------------
                                                                                  

consensus_8254#2      ------------------------------------------------------------
consensus_8254#3      ------------------------------------------------------------
consensus_8254#0      ACCACAGAAGATTTAGAGAGCTTGTTGAGTTATACCCCTGCTCTACAACAGTTGAAGCTA 1208
consensus_8254#1      ------------------------------------------------------------
                                                                                  

consensus_8254#2      ------------------------------------------------------------
consensus_8254#3      ------------------------------------------------------------
consensus_8254#0      AGGCAATGTCCAATGCTGGAATACTTGAAGATCACTGATGTACTAGCTAAGCTTGTCTAC 1268
consensus_8254#1      ------------------------------------------------------------
                                                                                  

consensus_8254#2      ------------------------------------------------------------
consensus_8254#3      ------------------------------------------------------------
consensus_8254#0      ATTGATATCGTTCCCTGCTTGTGGCTGAAGATTTTGGAGATCCATGCTCAAAATCTTGTT 1328
consensus_8254#1      ------------------------------------------------------------
                                                                                  

consensus_8254#2      ------------------------------------------------------------
consensus_8254#3      ------------------------------------------------------------
consensus_8254#0      GCGATTAATACTTACAATATCTGTCACCTAAAAATAGTACTGAGTGAAGCATTAGTGTTG 1388
consensus_8254#1      ------------------------------------------------------------
                                                                                  

consensus_8254#2      ------------------------------------------------------------
consensus_8254#3      ------------------------------------------------------------
consensus_8254#0      AAGGGGGCACACATTGAGTTAGTTCTGTCATCAGATGTTATTGAGTATGCTTTTACTGAT 1448
consensus_8254#1      ------------------------------------------------------------
                                                                                  

consensus_8254#2      ------------------------------------------------------------
consensus_8254#3      ------------------------------------------------------------
consensus_8254#0      CTTGCACCACTCATGCCAGACCTCGAGTCATTGTTCCTGAGTGGCTGTACTGAGATGATT 1508
consensus_8254#1      ------------------------------------------------------------
                                                                                  

consensus_8254#2      ------------------------------------------------------------
consensus_8254#3      ------------------------------------------------------------
consensus_8254#0      ATATCCAGGAGACCTCCAAGCAATAGATTCCATTGCCTGAAGCAATTGGAGTTAAAATTG 1568
consensus_8254#1      ------------------------------------------------------------
                                                                                  

consensus_8254#2      ------------------------------------------------------------
consensus_8254#3      ------------------------------------------------------------
consensus_8254#0      CAGGATATATCGACGAAATATGATCTTCTATTTCTTGCTAAGTTTGTTGATGCTGCTCCA 1628
consensus_8254#1      ------------------------------------------------------------
                                                                                  

consensus_8254#2      ------------------------------------------------------------
consensus_8254#3      ------------------------------------------------------------
consensus_8254#0      GTCCTAGAAGCTCTCGTTTTTCATCTGGAAGATATAGAGGAGCCATTTTGTTACATGGAA 1688
consensus_8254#1      ------------------------------------------------------------
                                                                                  

consensus_8254#2      ------------------------------------------------------------
consensus_8254#3      ------------------------------------------------------------
consensus_8254#0      AAGGAAGCAGAGTTGAGAAGTCTGGAGAAACATTGTCCACATAAAAACCTCAAGTTGGTC 1748
consensus_8254#1      ------------------------------------------------------------
                                                                                  

consensus_8254#2      ------------------------------------------------------------
consensus_8254#3      ------------------------------------------------------------
consensus_8254#0      AAAATGACTGGATTTTCAGCAGGCCGTTCAAGCCTTGAGCTTGCTCTGTATTTCGTGGAG 1808
consensus_8254#1      ------------------------------------------------------------
                                                                                  

consensus_8254#2      ------------------------------------------------------------
consensus_8254#3      ------------------------------------------------------------
consensus_8254#0      AACTCACCAGCACTAGAACTCCTGATTCTTGATCATCGGCTTGACAGATCTGTTTGCCGA 1868
consensus_8254#1      ------------------------------------------------------------
                                                                                  

consensus_8254#2      ------------------------------------------------------------
consensus_8254#3      ------------------------------------------------------------
consensus_8254#0      ATCACTTTTGGTGGTGACTTGGATGCGAAATGCTCGAAAGGATATGAACACACTATCTCC 1928
consensus_8254#1      ------------------------------------------------------------
                                                                                  

consensus_8254#2      ------------------------------------------------------------
consensus_8254#3      ------------------------------------------------------------
consensus_8254#0      AAATATGTTAGCAATGCGATTCCTCGCCGTGTTAGATTATCATATTCCTAATGTAGCACA 1988
consensus_8254#1      ------------------------------------------------------------
                                                                                  

consensus_8254#2      ------------------------------------------------------------
consensus_8254#3      ------------------------------------------------------------
consensus_8254#0      AACAAGTTGCACGTGGTGCGAGTTGCAGTGCTAGGACTGCTACAGTAGAAATTAAAATTG 2048
consensus_8254#1      ------------------------------------------------------------
                                                                                  

consensus_8254#2      ------------------------------------------------------------
consensus_8254#3      ------------------------------------------------------------
consensus_8254#0      CAACGACAGCTGTATAAATTGTAAGATGTTTTGGTCTCTCAATCTATGATGTGATCAGGT 2108
consensus_8254#1      ------------------------------------------------------------
                                                                                  

consensus_8254#2      ------------------------------------------------------------
consensus_8254#3      ------------------------------------------------------------
consensus_8254#0      AATTAAATGACACATGAGTGCAGTAAAAGTGCAAGTATATAGTAGATCAATGGCAATGGG 2168
consensus_8254#1      ------------------------------------------------------------
                                                                                  

consensus_8254#2      ----------------------------------------------
consensus_8254#3      ----------------------------------------------
consensus_8254#0      CAATGAGATGTACTACCTCCATTTTTTTTAATAGATGACGCCGTTG 2214
consensus_8254#1      ----------------------------------------------
                                                                    




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)