cluster # 8257

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Oryza sativa
cluster # 8257 cluster # 8257 Sequences # 5 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_8257#0 length = 1326 sequences # 4

consensus_8257#1 length = 370 sequences # 1

consensusID : consensus_8257#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 1326
fasta sequence

                              [GCCACCGGAGCCCGCATCCGCATCCACCACCTCCGCTCGCAATCACTCTACAACAGATCGGAAACCTCGCGGGCGGCGGCGGCGGCGGCGCGGGTAAGCGAGCGGACACCGGCGACGAGCGCGAGGAGGAGGAGGAGGAGGAAGGAGAAGATGGCGGCGACGCTGTCGCAGCTCGACGACGGGATCGTCCGCGGGATGGCCATCGGCGCGGTATTCACCGACTACGCTGGGAAGATAAACTGCCTCGACTTCCACCGCAAGGAGGATCTCCTCGTCACCTCCAGCGAGGACGACTCCATACGCCTCTACAACATCACCAGCGCCACGTTGTTGAAGACTACATATCATAGGAAACATGGTGCTGACCGTGTCTG-TTTCACTCACCATCCGAGTTCTATCTTATGTTCATCAAGATACAA-TCTAGAGTCAGCA-GAGTCACTTC-GTTATTTATCACTGTATGACAACCGTTGCTTAAGATATTTTAAAGGACACAAAGACAGGGTTGTTTCACTATGTATGTCACCTGTCAACGATAGTTTTATGTCAGGATCACTTGATCACAGTGTCAGGATATGGGATCTTCGTGTAAATGCTTGTCAGCATTAGGGTATACTACGTTTGCGTGGTAGGCCTTCTGTTGCATATGATCAGCAGGGACTTGTTTTTGCCGTGGCAATGGAAGGAGGTGCTATTAAGCTATTTGATTCCCGGTCATATGACAAAGGTCCCTTTGACACTTTCTTGGTTGGTGGAGATACAGCTGAAGTTTCTGACATCAAATTTAGCAATGATGGCAAGTCCATGCTTTTGACAACAACCAACAACCATATATATGTTCTGGATGCATATGGAGGGGATAAGAGGTGTGGCTTTAGTCTGGAGTCATCTCCCAATGTAGCAACTGAAGCTGCTTTTACTCCAGATGGCCAATATGTAATTTCAGGATCTGGTGATGGTACCTTGCATGCTTGGAACATCAATACAATACAAGAGATTGCTTGTTGGAACAGTCACATCGGTCCTATCACTGCTTTGAAGTGGGCTCCCCGTCGAGCAATGTTTGCAACTGCGTCAACTGCCCTAACTTTCTGGATTCCCAACAATTCCAGTTCGAATTAGGTGCCTAGCAAAAAGGATGGAACGTGTGATATGCTGATTCAACAAACACTTGTATCCTGTTCTTTCCTGCACAAGATGGGTATCGTGTATGAAGTATCAATCTCTTTATTACCATCTGTGGCAAAAAATGATGATGTACACCTTCCCATTGTATTCTCTTATGGCTATTGTTAATACACATAAAATTTTCTGCAAAAAAAAAAAAGA]

[+] EMBL OSS14572A            [GCCACCGGAGCCCGCATCCGCATCCACCACCTCCGCTCGCAATCACTCTACAACAGATCGGAAACCTCGCGGGCGGCGGCGGCGGCGGCGCGGGTAAGCGAGCGGACACCGGCGACGAGCGCGAGGAGGAGGAGGAGGAGGAAGGAGAAGATGGCGGCGACGCTGTCGCAGCTCGACGACGGGATCGTCCGCGGGATGGCCATCGGCGCGGTATTCACCGACTACGCTGGGAAGATAAACTGCCTCGACTTCCACCGCAAGGAGGATCTCCTCGTCACCTCCAGCGAGGACGACTCCATACGGCTCTACAACATCACCAGCGCCACGTTGTTGAAGACTACATATCATAGGGAACATGGTGCTGACCGTGTCTGTTTTCACTCANCATNCGAGTTCTATCTTATGTTCATCAAGGTACAATTTTAGAGTCAGCAGGAGTCACTTCGGTAATTTATCACTGTATGACAACCGT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          ]
[+] EMBL AK103378             [                                                    ACAGATCGGAAACCTCGCGGGCGGCGGCGGCGGCGGCGCGGGTAAGCGAGCGGACACCGGCGACGAGCGCGAGGAGGAGGAGGAGGAGGAAGGAGAAGATGGCGGCGACGCTGTCGCAGCTCGACGACGGGATCGTCCGCGGGATGGCCATCGGCGCGGTATTCACCGACTACGCTGGGAAGATAAACTGCCTCGACTTCCACCGCAAGGAGGATCTCCTCGTCACCTCCAGCGAGGACGACTCCATACGCCTCTACAACATCACCAGCGCCACGTTGTTGAAGACTACATATCATAGGAAACATGGTGCTGACCGTGTCTG TTTCACTCACCATCCGAGTTCTATCTTATGTTCATCAAGATACAA TCTAGAGTCAGCA GAGTCACTTC GTTATTTATCACTGTATGACAACCGTTGCTTAAGATATTTTAAAGGACACAAAGACAGGGTTGTTTCACTATGTATGTCACCTGTCAACGATAGTTTTATGTCAGGATCACTTGATCACAGTGTCAGGATATGGGATCTTCGTGTAAATGCTTGTC      AGGGTATACTACGTTTGCGTGGTAGGCCTTCTGTTGCATATGATCAGCAGGGACTTGTTTTTGCCGTGGCAATGGAAGGAGGTGCTATTAAGCTATTTGATTCCCGGTCATATGACAAAGGTCCCTTTGACACTTTCTTGGTTGGTGGAGATACAGCTGAAGTTTCTGACATCAAATTTAGCAATGATGGCAAGTCCATGCTTTTGACAACAACCAACAACCATATATATGTTCTGGATGCATATGGAGGGGATAAGAGGTGTGGCTTTAGTCTGGAGTCATCTCCCAATGTAGCAACTGAAGCTGCTTTTACTCCAGATGGCCAATATGTAATTTCAGGATCTGGTGATGGTACCTTGCATGCTTGGAACATCAATACAATACAAGAGATTGCTTGTTGGAACAGTCACATCGGTCCTATCACTGCTTTGAAGTGGGCTCCCCGTCGAGCAATGTTTGCAACTGCGTCAACTGCCCTAACTTTCTGGATTCCCAACAATTCCAGTTCGAATTAGGTGCCTAGCAAAAAGGATGGAACGTGTGATATGCTGATTCAACAAACACTTGTATCCTGTTCTTTCCTGCACAAGATGGGTATCGTGTATGAAGTATCAATCTCTTTATTACCATCTGTGGCAAAAAATGATGATGTACACCTTCCCATTGTATTCTCTTATGGCTATTGTTAATACACATAAAATTTTC                 ]
[+] EMBL CB665455             [                                                                                    GCGGCGCGGGTAAGCGAGCGGACACCGGCGACGAGCGCGAGGAGGAGGAGGAGGAGGAAGGAGAAGATGGCGGCGACGCTGTCGCAGCTCGACGACGGGATCGTCCGCGGGATGGCCATCGGCGCGGTATTCACCGACTACGCTGGGAAGATAAACTGCCTCGACTTCCACCGCAAGGAGGATCTCCTCGTCACCTCCAGCGAGGACGACTCCATACGCCTCTACAACATCACCAGCGCCACGTTGTTGAAGACTACATATCATAGGAAACATGGTGCTGACCGTGTCTG TTTCACTCACCATCCGAGTTCTATCTTATGTTCATCAAGATACAA TCTAGAGTCAGCA GAGTCACTTC GTTATTTATCACTGTATGACAACCGTTGCTTAAGATATTTTAAAGGACACAAAGACAGGGTTGTTTCACTATGTATGTCACCTGTCAACGATAGTTTTATGTCAGGATCACTTGATCACAGTGTCAGGATATGGGATCTTCGTGTAAATGCTTGTCAGCATTAGGGTATACTACGTTTGCGTGGTAGGCCTTCTGTTGCATATGATCAGCAGGGACTTGTTTTTGCCGTGGCAATGGAAGGAGGTGCTATTAAGCTATTTGATTCCCGGTCATATGACAAAGGTCCCTTTGACACTTTCTTGGTTGGTGGAGATACAGCTGAAGTTTCTGACATCAAATTTAGCAATGATGGCAAGTCCATGCTTTTGACAACAACCAACAACCATATATATGTTCTGGATGCATATGGAGGGGANTAGAGGTGTGGCTTTAGTCTGGAGTCATCT                                                                                                                                                                                                                                                                                                                                                                                                                                                      ]
[-] EMBL CB665456             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   TCAGGATCACTTGATCACAGTGTCAGGATATGGGATCTTCGTGTAAATGCTTGTCAGCATTAGGGTATACTACGTTTGCGTGGTAGGCCTTCTGTTGCATATGATCAGCAGGGACTTGTTTTTGCCGTGGCAATGGAAGGAGGTGCTATTAAGCTATTTGATTCCCGGTCATATGACAAAGGTCCCTTTGACACTTTCTTGGTTGGTGGAGATACAGCTGAAGTTTCTGACATCAAATTTAGCAATGATGGCAAGTCCATGCTTTTGACAACAACCAACAACCATATATATGTTCTGGATGCATATGGAGGGGATAAGAGGTGTGGCTTTAGTCTGGAGTCATCTCCCAATGTAGCAACTGAAGCTGCTTTTACTCCAGATGGCCAATATGTAATTTCAGGATCTGGTGATGGTACCTTGCATGCTTGGAACATCAATACAATACAAGAGATTGCTTGTTGGAACAGTCACATCGGTCCTATCACTGCTTTGAAGTGGGCTCCCCGTCGAGCAATGTTTGCAACTGCGTCAACTGCCCTAACTTTCTGGATTCCCAACAATTCCAGTTCGAATTAGGTGCCTAGCAAAAAGGATGGAACGTGTGATATGCTGATTCAACAAACACTTGTATCCTGTTCTTTCCTGCACAAGATGGGTATCGTGTATGAAGTATCAATCTCTTTATTACCATCTGTGGCAAAAAATGATGATGTACACCTTCCCATTGTATTCTCTTATGGCTATTGTTAATCCACATAAAATTTTCTGCAAAAAAAAAAAAGA]




>consensus_8257#0
GCCACCGGAGCCCGCATCCGCATCCACCACCTCCGCTCGCAATCACTCTACAACAGATCG
GAAACCTCGCGGGCGGCGGCGGCGGCGGCGCGGGTAAGCGAGCGGACACCGGCGACGAGC
GCGAGGAGGAGGAGGAGGAGGAAGGAGAAGATGGCGGCGACGCTGTCGCAGCTCGACGAC
GGGATCGTCCGCGGGATGGCCATCGGCGCGGTATTCACCGACTACGCTGGGAAGATAAAC
TGCCTCGACTTCCACCGCAAGGAGGATCTCCTCGTCACCTCCAGCGAGGACGACTCCATA
CGCCTCTACAACATCACCAGCGCCACGTTGTTGAAGACTACATATCATAGGAAACATGGT
GCTGACCGTGTCTGTTTCACTCACCATCCGAGTTCTATCTTATGTTCATCAAGATACAAT
CTAGAGTCAGCAGAGTCACTTCGTTATTTATCACTGTATGACAACCGTTGCTTAAGATAT
TTTAAAGGACACAAAGACAGGGTTGTTTCACTATGTATGTCACCTGTCAACGATAGTTTT
ATGTCAGGATCACTTGATCACAGTGTCAGGATATGGGATCTTCGTGTAAATGCTTGTCAG
CATTAGGGTATACTACGTTTGCGTGGTAGGCCTTCTGTTGCATATGATCAGCAGGGACTT
GTTTTTGCCGTGGCAATGGAAGGAGGTGCTATTAAGCTATTTGATTCCCGGTCATATGAC
AAAGGTCCCTTTGACACTTTCTTGGTTGGTGGAGATACAGCTGAAGTTTCTGACATCAAA
TTTAGCAATGATGGCAAGTCCATGCTTTTGACAACAACCAACAACCATATATATGTTCTG
GATGCATATGGAGGGGATAAGAGGTGTGGCTTTAGTCTGGAGTCATCTCCCAATGTAGCA
ACTGAAGCTGCTTTTACTCCAGATGGCCAATATGTAATTTCAGGATCTGGTGATGGTACC
TTGCATGCTTGGAACATCAATACAATACAAGAGATTGCTTGTTGGAACAGTCACATCGGT
CCTATCACTGCTTTGAAGTGGGCTCCCCGTCGAGCAATGTTTGCAACTGCGTCAACTGCC
CTAACTTTCTGGATTCCCAACAATTCCAGTTCGAATTAGGTGCCTAGCAAAAAGGATGGA
ACGTGTGATATGCTGATTCAACAAACACTTGTATCCTGTTCTTTCCTGCACAAGATGGGT
ATCGTGTATGAAGTATCAATCTCTTTATTACCATCTGTGGCAAAAAATGATGATGTACAC
CTTCCCATTGTATTCTCTTATGGCTATTGTTAATACACATAAAATTTTCTGCAAAAAAAA
AAAAGA

consensusID : consensus_8257#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 370
fasta sequence

                              [GATACAATCTAGAGTCAGCAGAGTCACTTCGTTATTTATCACTGTATGACAACCGTTGCTTAAGATATTTTAAAGGACACAAAGACAGGGTTGTTTCACTATGTATGTCACCTGTCAACGATAGTTTTATGTCAGGATCACTTGATCACAGTGTCAGGATATGGGATCTTCGTGTAAATGCTTGTCAGGGTATACTACGTTTGCGTGGTAGGCCTTCTGTTGCATATGATCAGCAGGGACTTGTTTTTGCCGTGGCAATGTCTTGTCTCCACCGTCAATGATCCGCTTGTACCTAGATTACTCTTTCCATTGTCATCGGCTAACATTGTGATAATATCAGTTTGCGTATGTTAGATTAAATTGTTTCTAA]

[+] EMBL CF196081             [GATACAATCTAGAGTCAGCAGAGTCACTTCGTTATTTATCACTGTATGACAACCGTTGCTTAAGATATTTTAAAGGACACAAAGACAGGGTTGTTTCACTATGTATGTCACCTGTCAACGATAGTTTTATGTCAGGATCACTTGATCACAGTGTCAGGATATGGGATCTTCGTGTAAATGCTTGTCAGGGTATACTACGTTTGCGTGGTAGGCCTTCTGTTGCATATGATCAGCAGGGACTTGTTTTTGCCGTGGCAATGTCTTGTCTCCACCGTCAATGATCCGCTTGTACCTAGATTACTCTTTCCATTGTCATCGGCTAACATTGTGATAATATCAGTTTGCGTATGTTAGATTAAATTGTTTCTAA]




>consensus_8257#1
GATACAATCTAGAGTCAGCAGAGTCACTTCGTTATTTATCACTGTATGACAACCGTTGCT
TAAGATATTTTAAAGGACACAAAGACAGGGTTGTTTCACTATGTATGTCACCTGTCAACG
ATAGTTTTATGTCAGGATCACTTGATCACAGTGTCAGGATATGGGATCTTCGTGTAAATG
CTTGTCAGGGTATACTACGTTTGCGTGGTAGGCCTTCTGTTGCATATGATCAGCAGGGAC
TTGTTTTTGCCGTGGCAATGTCTTGTCTCCACCGTCAATGATCCGCTTGTACCTAGATTA
CTCTTTCCATTGTCATCGGCTAACATTGTGATAATATCAGTTTGCGTATGTTAGATTAAA
TTGTTTCTAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_8257#0      GCCACCGGAGCCCGCATCCGCATCCACCACCTCCGCTCGCAATCACTCTACAACAGATCG 60
consensus_8257#1      ------------------------------------------------------------
                                                                                  

consensus_8257#0      GAAACCTCGCGGGCGGCGGCGGCGGCGGCGCGGGTAAGCGAGCGGACACCGGCGACGAGC 120
consensus_8257#1      ------------------------------------------------------------
                                                                                  

consensus_8257#0      GCGAGGAGGAGGAGGAGGAGGAAGGAGAAGATGGCGGCGACGCTGTCGCAGCTCGACGAC 180
consensus_8257#1      ------------------------------------------------------------
                                                                                  

consensus_8257#0      GGGATCGTCCGCGGGATGGCCATCGGCGCGGTATTCACCGACTACGCTGGGAAGATAAAC 240
consensus_8257#1      ------------------------------------------------------------
                                                                                  

consensus_8257#0      TGCCTCGACTTCCACCGCAAGGAGGATCTCCTCGTCACCTCCAGCGAGGACGACTCCATA 300
consensus_8257#1      ------------------------------------------------------------
                                                                                  

consensus_8257#0      CGCCTCTACAACATCACCAGCGCCACGTTGTTGAAGACTACATATCATAGGAAACATGGT 360
consensus_8257#1      ------------------------------------------------------------
                                                                                  

consensus_8257#0      GCTGACCGTGTCTGTTTCACTCACCATCCGAGTTCTATCTTATGTTCATCAAGATACAAT 420
consensus_8257#1      ----------------------------------------------------GATACAAT 8
                                                                          ********

consensus_8257#0      CTAGAGTCAGCAGAGTCACTTCGTTATTTATCACTGTATGACAACCGTTGCTTAAGATAT 480
consensus_8257#1      CTAGAGTCAGCAGAGTCACTTCGTTATTTATCACTGTATGACAACCGTTGCTTAAGATAT 68
                      ************************************************************

consensus_8257#0      TTTAAAGGACACAAAGACAGGGTTGTTTCACTATGTATGTCACCTGTCAACGATAGTTTT 540
consensus_8257#1      TTTAAAGGACACAAAGACAGGGTTGTTTCACTATGTATGTCACCTGTCAACGATAGTTTT 128
                      ************************************************************

consensus_8257#0      ATGTCAGGATCACTTGATCACAGTGTCAGGATATGGGATCTTCGTGTAAATGCTTGTCAG 600
consensus_8257#1      ATGTCAGGATCACTTGATCACAGTGTCAGGATATGGGATCTTCGTGTAAATGCTTGTCAG 188
                      ************************************************************

consensus_8257#0      CATTAGGGTATACTACGTTTGCGTGGTAGGCCTTCTGTTGCATATGATCAGCAGGGACTT 660
consensus_8257#1      ------GGTATACTACGTTTGCGTGGTAGGCCTTCTGTTGCATATGATCAGCAGGGACTT 242
                            ******************************************************

consensus_8257#0      GTTTTTGCCGTGGCAATGGAAGGAGGTGCTATTAAGCTATTTGATTCCCGGTCATATGAC 720
consensus_8257#1      GTTTTTGCCGTGGCAATGTCTTGTCTCCACCGTCAATGATCCGCTT---GTACCTAGATT 299
                      ******************    *         * *   **  * **   *  * **    

consensus_8257#0      AAAGGTCCCTTTGACACTTTCTTGGTTGGTGGAGATA-CAGCTGAAGTTTCTGACATCAA 779
consensus_8257#1      ACTCTTTCCATTGTCATCGGCTAACATTGTGATAATATCAGTTTGCGTATGTTAGATTAA 359
                      *    * ** *** **    **    * ***   *** *** *   ** * * * ** **

consensus_8257#0      ATTTAGCAATGATGGCAAGTCCATGCTTTTGACAACAACCAACAACCATATATATGTTCT 839
consensus_8257#1      ATT-GTTTCTAA------------------------------------------------ 370
                      ***      * *                                                

consensus_8257#0      GGATGCATATGGAGGGGATAAGAGGTGTGGCTTTAGTCTGGAGTCATCTCCCAATGTAGC 899
consensus_8257#1      ------------------------------------------------------------
                                                                                  

consensus_8257#0      AACTGAAGCTGCTTTTACTCCAGATGGCCAATATGTAATTTCAGGATCTGGTGATGGTAC 959
consensus_8257#1      ------------------------------------------------------------
                                                                                  

consensus_8257#0      CTTGCATGCTTGGAACATCAATACAATACAAGAGATTGCTTGTTGGAACAGTCACATCGG 1019
consensus_8257#1      ------------------------------------------------------------
                                                                                  

consensus_8257#0      TCCTATCACTGCTTTGAAGTGGGCTCCCCGTCGAGCAATGTTTGCAACTGCGTCAACTGC 1079
consensus_8257#1      ------------------------------------------------------------
                                                                                  

consensus_8257#0      CCTAACTTTCTGGATTCCCAACAATTCCAGTTCGAATTAGGTGCCTAGCAAAAAGGATGG 1139
consensus_8257#1      ------------------------------------------------------------
                                                                                  

consensus_8257#0      AACGTGTGATATGCTGATTCAACAAACACTTGTATCCTGTTCTTTCCTGCACAAGATGGG 1199
consensus_8257#1      ------------------------------------------------------------
                                                                                  

consensus_8257#0      TATCGTGTATGAAGTATCAATCTCTTTATTACCATCTGTGGCAAAAAATGATGATGTACA 1259
consensus_8257#1      ------------------------------------------------------------
                                                                                  

consensus_8257#0      CCTTCCCATTGTATTCTCTTATGGCTATTGTTAATACACATAAAATTTTCTGCAAAAAAA 1319
consensus_8257#1      ------------------------------------------------------------
                                                                                  

consensus_8257#0      AAAAAGA 1326
consensus_8257#1      -------