cluster # 826

These datas are free for academic use only, please contact me for any other use.

Oryza sativa
cluster # 826 cluster # 826 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_826#0 length = 580 sequences # 1

consensus_826#1 length = 522 sequences # 1

consensusID : consensus_826#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 580
fasta sequence

                              [TTTGATTCCGCTCGATTCCGCGGAGCGCTATCCTCTCTCGCTCTCTTTCATTAGTTCGTCTTCCTCCGCCCATCTCTTTCGTTCTCTCCGCTGTGTTTCGTTCTCTTGAATTTCTCTCCGATTTCGTTGTGGTCGCTGATGATGGGGGATGGCAGATCCCTAGTCCCCCCCCCACCCCCCCCCCCAACACCCCCAATCTGGTCGTGCTACCCTTGAGCAATGGAGGCGATTCTGCCGCAACAAGGGAGCGGCTGGTGCTGTCAACGGCGCAACGGCGGTGAGATTCGCCCGCTGCGGAAGTCGTGGCCTGGAGAACGGAGAGGAACCGCCAGATCCTGGGGCTACAGAGCAACACCGCCAGATCGTAGAGAGTTTGGCCGCCGCCGCCGCTGGAATCATTTGGTTGATGCCGAAGCTGCCAAGATGACTCTGATGATGAGCTTACTCTTGCAGTACATGTTCGTAGTTAGTGTGATGGATGAACATCACCATTTTGCCTGGCACTGTGTACTGCCGCTCCAAAGTTAGTATGATGTAATAGTGAAGGCTATATGTCCATGTGCTTAGTCTTAATGTTCTT]

[+] EMBL AK073272             [TTTGATTCCGCTCGATTCCGCGGAGCGCTATCCTCTCTCGCTCTCTTTCATTAGTTCGTCTTCCTCCGCCCATCTCTTTCGTTCTCTCCGCTGTGTTTCGTTCTCTTGAATTTCTCTCCGATTTCGTTGTGGTCGCTGATGATGGGGGATGGCAGATCCCTAGTCCCCCCCCCACCCCCCCCCCCAACACCCCCAATCTGGTCGTGCTACCCTTGAGCAATGGAGGCGATTCTGCCGCAACAAGGGAGCGGCTGGTGCTGTCAACGGCGCAACGGCGGTGAGATTCGCCCGCTGCGGAAGTCGTGGCCTGGAGAACGGAGAGGAACCGCCAGATCCTGGGGCTACAGAGCAACACCGCCAGATCGTAGAGAGTTTGGCCGCCGCCGCCGCTGGAATCATTTGGTTGATGCCGAAGCTGCCAAGATGACTCTGATGATGAGCTTACTCTTGCAGTACATGTTCGTAGTTAGTGTGATGGATGAACATCACCATTTTGCCTGGCACTGTGTACTGCCGCTCCAAAGTTAGTATGATGTAATAGTGAAGGCTATATGTCCATGTGCTTAGTCTTAATGTTCTT]




>consensus_826#0
TTTGATTCCGCTCGATTCCGCGGAGCGCTATCCTCTCTCGCTCTCTTTCATTAGTTCGTC
TTCCTCCGCCCATCTCTTTCGTTCTCTCCGCTGTGTTTCGTTCTCTTGAATTTCTCTCCG
ATTTCGTTGTGGTCGCTGATGATGGGGGATGGCAGATCCCTAGTCCCCCCCCCACCCCCC
CCCCCAACACCCCCAATCTGGTCGTGCTACCCTTGAGCAATGGAGGCGATTCTGCCGCAA
CAAGGGAGCGGCTGGTGCTGTCAACGGCGCAACGGCGGTGAGATTCGCCCGCTGCGGAAG
TCGTGGCCTGGAGAACGGAGAGGAACCGCCAGATCCTGGGGCTACAGAGCAACACCGCCA
GATCGTAGAGAGTTTGGCCGCCGCCGCCGCTGGAATCATTTGGTTGATGCCGAAGCTGCC
AAGATGACTCTGATGATGAGCTTACTCTTGCAGTACATGTTCGTAGTTAGTGTGATGGAT
GAACATCACCATTTTGCCTGGCACTGTGTACTGCCGCTCCAAAGTTAGTATGATGTAATA
GTGAAGGCTATATGTCCATGTGCTTAGTCTTAATGTTCTT

consensusID : consensus_826#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 522
fasta sequence

                              [TGCTCCCCTTCAAGCAATTGAGCCAATTCTGCCGCAATGTAGGTTGGGGCTGGTGCTGTCAACAGCGCAACAGCGGTGAGATTCAGCTGCTGCGGGAGTCGTGGCCTGGAAAACGGAGAGGAACCGCCAGATCGTAGGGCCACACCGCTACACCGCCAGATCCTGGAGAGTTTGGCCACCGGCTGGAATCAATTGGTTGATGCCGAAGCTGTCAAGATGGGTGATGTATGTGTTTTCCGTTTCAATGACTCTGATGATGAGCTTACTCTTGAAGTACATGTTCTTAGTTAGTGTGATGGATGAACATCACCATTTTGCCTGGCACTGTGTACCGCCACTCCTAAGTTAGTACATATGATGTAATCGTGAAGACTATATGACGATGTGCTTAGTCTTAATGTTCCTGCACTTATGTACTGTGATGGATGAACATCACTATTTTATCAAGCATATGTACTGCCTTCCTATGATGTAATTAAGTTAGTGGATGAACTATCTACACATCTGTTTAATCGTAAAAAA]

[+] EMBL BI799199             [TGCTCCCCTTCAAGCAATTGAGCCAATTCTGCCGCAATGTAGGTTGGGGCTGGTGCTGTCAACAGCGCAACAGCGGTGAGATTCAGCTGCTGCGGGAGTCGTGGCCTGGAAAACGGAGAGGAACCGCCAGATCGTAGGGCCACACCGCTACACCGCCAGATCCTGGAGAGTTTGGCCACCGGCTGGAATCAATTGGTTGATGCCGAAGCTGTCAAGATGGGTGATGTATGTGTTTTCCGTTTCAATGACTCTGATGATGAGCTTACTCTTGAAGTACATGTTCTTAGTTAGTGTGATGGATGAACATCACCATTTTGCCTGGCACTGTGTACCGCCACTCCTAAGTTAGTACATATGATGTAATCGTGAAGACTATATGACGATGTGCTTAGTCTTAATGTTCCTGCACTTATGTACTGTGATGGATGAACATCACTATTTTATCAAGCATATGTACTGCCTTCCTATGATGTAATTAAGTTAGTGGATGAACTATCTACACATCTGTTTAATCGTAAAAAA]




>consensus_826#1
TGCTCCCCTTCAAGCAATTGAGCCAATTCTGCCGCAATGTAGGTTGGGGCTGGTGCTGTC
AACAGCGCAACAGCGGTGAGATTCAGCTGCTGCGGGAGTCGTGGCCTGGAAAACGGAGAG
GAACCGCCAGATCGTAGGGCCACACCGCTACACCGCCAGATCCTGGAGAGTTTGGCCACC
GGCTGGAATCAATTGGTTGATGCCGAAGCTGTCAAGATGGGTGATGTATGTGTTTTCCGT
TTCAATGACTCTGATGATGAGCTTACTCTTGAAGTACATGTTCTTAGTTAGTGTGATGGA
TGAACATCACCATTTTGCCTGGCACTGTGTACCGCCACTCCTAAGTTAGTACATATGATG
TAATCGTGAAGACTATATGACGATGTGCTTAGTCTTAATGTTCCTGCACTTATGTACTGT
GATGGATGAACATCACTATTTTATCAAGCATATGTACTGCCTTCCTATGATGTAATTAAG
TTAGTGGATGAACTATCTACACATCTGTTTAATCGTAAAAAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_826#0      TTTGATTCCGCTCGATTCCGCGGAGCGCTATCCTCTCTCGCTCTCTTTCATTAGTTCGTC 60
consensus_826#1      ------------------------------------------------------------
                                                                                 

consensus_826#0      TTCCTCCGCCCATCTCTTTCGTTCTCTCCGCTGTGTTTCGTTCTCTTGAATTTCTCTCCG 120
consensus_826#1      ------------------------------------------------------------
                                                                                 

consensus_826#0      ATTTCGTTGTGGTCGCTGATGATGGGGGATGGCAGATCCCTAGTCCCCCCCCCACCCCCC 180
consensus_826#1      ------------------------------------------------------------
                                                                                 

consensus_826#0      CCCCCAACACCCCCAATCTGGTCGTGCTACCCTT-GAGCAATGGAGGCGATTCTGCCGCA 239
consensus_826#1      ------------------------TGCTCCCCTTCAAGCAATTGAGCCAATTCTGCCGCA 36
                                             **** *****  ****** *** * ***********

consensus_826#0      ACA-AGGGAGCGGCTGGTGCTGTCAACGGCGCAACGGCGGTGAGATTCGCCCGCTGCGGA 298
consensus_826#1      ATGTAGGTTGGGGCTGGTGCTGTCAACAGCGCAACAGCGGTGAGATTCAGCTGCTGCGGG 96
                     *   ***  * **************** ******* ************  * ******* 

consensus_826#0      AGTCGTGGCCTGGAGAACGGAGAGGAACCGCCAGATCCTGGGGCTACAGAGCAACACCGC 358
consensus_826#1      AGTCGTGGCCTGGAAAACGGAGAGGAACCGCCAGATCGTAGGGCCACACCGCTACACCGC 156
                     ************** ********************** * **** ***  ** *******

consensus_826#0      CAGATCGTAGAGAGTTTGGCCGCCGCCGCCGCTGGAATCATTTGGTTGATGCCGAAGCTG 418
consensus_826#1      CAGATCCTGGAGAGTTTGGCCACCG-----GCTGGAATCAATTGGTTGATGCCGAAGCTG 211
                     ****** * ************ ***     ********** *******************

consensus_826#0      CCAAGATG----------------------------ACTCTGATGATGAGCTTACTCTTG 450
consensus_826#1      TCAAGATGGGTGATGTATGTGTTTTCCGTTTCAATGACTCTGATGATGAGCTTACTCTTG 271
                      *******                            ************************

consensus_826#0      CAGTACATGTTCGTAGTTAGTGTGATGGATGAACATCACCATTTTGCCTGGCACTGTGTA 510
consensus_826#1      AAGTACATGTTCTTAGTTAGTGTGATGGATGAACATCACCATTTTGCCTGGCACTGTGTA 331
                      *********** ***********************************************

consensus_826#0      CTGCCGCTCCAAAGTTAGTA----TGATGTAATAGTGAAGGCTATATGTCCATGTGCTTA 566
consensus_826#1      CCGCCACTCCTAAGTTAGTACATATGATGTAATCGTGAAGACTATATGACGATGTGCTTA 391
                     * *** **** *********    ********* ****** ******* * *********

consensus_826#0      GTCTTAATGTTCTT---------------------------------------------- 580
consensus_826#1      GTCTTAATGTTCCTGCACTTATGTACTGTGATGGATGAACATCACTATTTTATCAAGCAT 451
                     ************ *                                              

consensus_826#0      ------------------------------------------------------------
consensus_826#1      ATGTACTGCCTTCCTATGATGTAATTAAGTTAGTGGATGAACTATCTACACATCTGTTTA 511
                                                                                 

consensus_826#0      -----------
consensus_826#1      ATCGTAAAAAA 522