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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8263#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 1550 fasta sequence
[ACCACTTCCTCCTCTCCCGCGGCCGCGGCAGCGGCGCGTGCGGGTGCCTCCCTCCGGCGCCGCCCCCGCCCCGCCGCACTCCCTTCGCGGCCTCCTCCGCCTCGGCGTCAGCGGCGCGGCGCCTCGCCGTACCCGGCGATCTCCTGCTCCTCTCGCTCGCGCGCCTCGCGCTCCGTGGCCCGGCCCCGCGCGCGGAGGCGCGCCGATGGTTCGCGAGCCTCTCGGCGGCGTCGAACGGTCCACCGCGCGGCGGTGGAGGCGGGGGAGGCGGCGATGGGGGCGGTGGAGGGGGAGGCGGCGGCGGGTGGAAGCGCCCGCGAGCTTCGCAGGGAACGGCGGTGGCGGAGGAAGCCTCCGGGCAGGAGGCTGACGTCATAATCCTTGATGTTGGGGGGATGTCGTGTGGTGGATGTGCAGCAAGTGTCAAGCGCATTTTGGAGAGTGAGCCCCAAGTGCGGTCTGCAAATGTTAATCTTGCCACTGAGATGGCAGTCGTGTGGGCGGTGCCAGAAGATGAAAATGCGAAAAACTGGAAGCTGCAGTTGGGTGAGAAGCTTGCCAACCAGTTGACAACATGTGGTTACAAATCCAACCTTCGAGACTCTTCAAAAGCAAGTTCACAGACGGTTTTTGAAAGAAAGATGGATGAAAAACTTCAACAACTGAAACAAAGTGGTCGAGAACTTGCTGTATCTTGGGCATTATGTGCTGTTTGCCTGCTTGGGCACATTTCTCACCTCTTTGGAGTTAATGCACCATTGATGCACCTGCTGCATTCCACTGGGTTTCATTTGTCTCTCTCAATATTTACATTTATTGGTCCTGGTCGAAGATTAATTCTTGACGGATTAAATAGTCTATTCAAGGGGTCTCCCAATATGAATACATTGGTCGGTTTGGGTGCTCTTTCATCCTTTGCAGTCAGCTCAATTGCAGCCTTCGTTCCAAAGCTGGGGTGGAAGACATTTTTTGAGGAGCCGGTTATGTTAGTAGCTTTTGTTCTTCTTGGGAAGAACCTTGAGCAGAGGGCGAAGCTAAAAGCTACTAGTGATATGACTGGATTGCTCAATATTCTTCCATCAAAAGCACGCCTAATGGTGGACAATGATCCTGAGCAATCATCATTTACTGAGGTCCCATGCGATACCCTTTCTGTTGGAGACTATATTGTAGTGCTGCCTGGGGATCGTGTTCCAGCAGACGGTGTTGTCAAATCTGGACGGAGTACAGTTGATGAATCAAGTTTGACAGGTGAACCTATGCCTGTAACAAAGATAGCAGGGACAGAAGTATCAGCAGGAAGCATTAACTTAAATGGTAAAATCACTGTTGAAGTTAGAAGACCTGGTGGTGAGACTGCCATGTCTGACATACTCCGTTTAGTGGAAGAAGCACAGACGAGNGNNGCCCCAGTTCAACGATTAGCTGACAAGGTTGCTGGGAACTTTACATATGGAGNTATGGCTCTTTCTGCTGCTACTTATACATTCTNNNNNATTTTTGGTTCACAACTTGNNCCTGCTGCTATNNAGCATGGNNNNNCAATGGCT]
[+] EMBL CB627390 [ACCACTTCCTCCTCTCCCGCGGCCGCGGCAGCGGCGCGTGCGGGTGCCTCCCTCCGGCGCCGCCCCCGCCCCGCCGCACTCCCTTCGCGGCCTCCTCCGCCTCGGCGTCAGCGGCGCGGCGCCTCGCCGTACCCGGCGATCTCCTGCTCCTCTCGCTCGCGCGCCTCGCGCTCCGTGGCCCGGCCCCGCGCGCGGAGGCGCGCCGATGGTTCGCGAGCCTCTCGGCGGCGTCGAACGGTCCACCGCGCGGCGGTGGAGGCGGGGGAGGCGGCGATGGGGGCGGTGGAGGGGGAGGCGGCGGCGGGTGGAAGCGCCCGCGAGCTTCGCAGGGAACGGCGGTGGCGGAGGAAGCCTCCGGGCAGGAGGCTGACGTCATAATCCTTGATGTTGGGGGGATGTCGTGTGGTGGATGTGCAGCAAGTGTCAAGCGCATTTTGGAGAGTGAGCCCCAAGTGCGGTCTGCAAATGTTAATCTTGCCACTGAGATGGCAGTCGTGTGGGCGGTGCCAGAAGATGAAAATGCGAAAAACTGGAAGCTGCAGTTGGGTGAGAAGCTTGCCAACCAGTTGACAACATGTGGTTACAAATCCAACCTTCGAGACTCTTCAAAAGCAAGTTCACAGACGGTTTTTGAAAGAAAGATGGATGAAAAACTTCAACAACTGAAACAAAGTGGTCGAGAACTTGCTGTATCTTGGGCATTATGTGCTGTTTGCCTGCTTGGGCACATTTCTCACCTCTTTGGAGTTAATGCACCATTGATGCACCTGCTGCATTCCACTGGG ]
[+] EMBL CB639532 [ TTGACAACATGTGGTTACAAATCCAACCTTCGAGACTCTTCAAAAGCAAGTTCACAGACGGTTTTTGAAAGAAAGATGGATGAAAAACTTCAACAACTGAAACAAAGTGGTCGAGAACTTGCTGTATCTTGGGCATTATGTGCTGTTTGCCTGCTTGGGCACATTTCTCACCTCTTTGGAGTTAATGCACCATTGATGCACCTGCTGCATTCCACTGGGTTTCATTTGTCTCTCTCAATATTTACATTTATTGGTCCTGGTCGAAGATTAATTCTTGACGGATTAAATAGTCTATTCAAGGGGTCTCCCAATATGAATACATTGGTCGGTTTGGGTGCTCTTTCATCCTTTGCAGTCAGCTCAATTGCAGCCTTCGTTCCAAAGCTGGGGTGGAAGACATTTTTTGAGGAGCCGGTTATGTTAGTAGCTTTTGTTCTTCTTGGGAAGAACCTTGAGCAGAGGGCGAAGCTAAAAGCTACTAGTGATATGACTGGATTGCTCAATATTCTTCCATCAAAAGCACGCCTAATGGTGGACAATGATCCTGAGCAATCATCATTTACTGAGGTCC ]
[+] EMBL CB641134 [ TCCATCCTTAGAGACTCTTGAACAGCAAGTTCACAGACCGTTTTTGAAAGAAATATGGATGAAAAACTTCAACAACTGAAACAAAGTGGTCTAGAACTTGCTGTATCTTGGGCATTATGTGCTGTTTGCCTGCTTGGGCACATTTCTCACCTTTTTGTTTTTAATGCACCATTGATGCACCTGCTGCATTCCACTGGGTTTCATTTGTCTCTCTCAATATTTACATTTATTGGTCCTGGTCGAAGATTAATTCTTGACGGATTAAATAGTCTATTCAAGGGGTCTCCCAATATGAATACATTGGTCGGTTTGGGTGCTCTTTCATCCTTTGCAGTCAGCTCAATTGCAGCCTTCGTTCCAAAGCTGGGGTGGAAGACATTTTTTGAGGAGCCGGTTATGTTAGTAGCTTTTGTTCTTCTTGGGAAGAACCTTGAGCAGAGGGCGAAGCTAAAAGCTACTAGTGATATGACTGGATTGCTCAATATTCTTCCATCAAAAGCACGCCTAATGGTGGAC ]
[+] EMBL CF196511 [ GAGCCGGTTATGTTAGTAGCTTTTGTTCTTCTTGGGAAGAACCTTGAGCAGAGGGCGAAGCTAAAAGCTACTAGTGATATGACTGGATTGCTCAATATTCTTCCATCAAAAGCACGCCTAATGGTGGACAATGATCCTGAGCAATCATCATTTACTGAGGTCCCATGCGATACCCTTTCTGTTGGAGACTATATTGTAGTGCTGCCTGGGGATCGTGTTCCAGCAGACGGTGTTGTCAAATCTGGACGGAGTACAGTTGATGAATCAAGTTTGACAGGTGAACCTATGCCTGTAACAAAGATAGCAGGGACAGAAGTATCAGCAGGAAGCATTAACTTAAATGGTAAAATCACTGTTGAAGTTAGAAGACCTGGTGGTGAGACTGCCATGTCTGACATACTCCGTTTAGTGGAAGAAGCACAGACGAGNGNNGCCCCAGTTCAACGATTAGCTGACAAGGTTGCTGGGAACTTTACATATGGAGNTATGGCTCTTTCTGCTGCTACTTATACATTCTNNNNNATTTTTGGTTCACAACTTGNNCCTGCTGCTATNNAGCATGGNNNNNCAATGGCT]
consensusID : consensus_8263#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 756 fasta sequence
[GCGGGCGGAAGCGCCCGCGAGCTTCGCAGGGAACGGCGGTGGCGGAGGAAGCCTCCGGGCAGGAGGCTGACGTCATAATCCTTGATGTTGGGGGGATGTCGTGTGGTGGATGTGCAGCAAGTGTCAAGCGCATTTTGGAGAGTGAGGTGAAATAAGTTAAATCAGCTTGCCTCTGCTTCACATGTAAAACTTTTGGCACGGTGTTACTAGCTTGCTAATTGTGTTTGTAAGCCTGTATGCGCGTTGTTTTTTAGCCCCAAGTGCGGTCTGCAAATGTTAATCTTGCCACTGAGATGGCAGTCGTGTGGGCGGTGCCAGAAGATGAAAATGCGAAAAACTGGAAGCTGCAGTTGGGTGAGAAGCTTGCCAACCAGTTGACAACATGTGGTTACAAATCCAACCTTCGAGACTCTTCAAAAGCAAGTTCACAGACGGTTTTTGAAAGAAAGATGGATGAAAAACTTCAACAACTGAAACAAAGTGGTCGAGAACTTGCTGTATCTTGGGCATTATGTGCTGTTTGCCTGCTTGGGCACATTTCTCACCTCTTTGGAGTTAATGCACCATTGATGCACCTGCTGCATTCCACTGGGTTTCATTTGTCTCTCTCAATATTTACATTTATTGGTCCTGGTCGAAGATTAATTCTTGACGGATTAAATAGTCTATTCAAGGGGTCTCCCAATATGAATACATTGGTCGGTTTGGGTGCTCTTTCATCCTTTGCAGTCAGCTCAATTGCAGCCTTCGTTCCAA]
[+] EMBL CB632784 [GCGGGCGGAAGCGCCCGCGAGCTTCGCAGGGAACGGCGGTGGCGGAGGAAGCCTCCGGGCAGGAGGCTGACGTCATAATCCTTGATGTTGGGGGGATGTCGTGTGGTGGATGTGCAGCAAGTGTCAAGCGCATTTTGGAGAGTGAGGTGAAATAAGTTAAATCAGCTTGCCTCTGCTTCACATGTAAAACTTTTGGCACGGTGTTACTAGCTTGCTAATTGTGTTTGTAAGCCTGTATGCGCGTTGTTTTTTAGCCCCAAGTGCGGTCTGCAAATGTTAATCTTGCCACTGAGATGGCAGTCGTGTGGGCGGTGCCAGAAGATGAAAATGCGAAAAACTGGAAGCTGCAGTTGGGTGAGAAGCTTGCCAACCAGTTGACAACATGTGGTTACAAATCCAACCTTCGAGACTCTTCAAAAGCAAGTTCACAGACGGTTTTTGAAAGAAAGATGGATGAAAAACTTCAACAACTGAAACAAAGTGGTCGAGAACTTGCTGTATCTTGGGCATTATGTGCTGTTTGCCTGCTTGGGCACATTTCTCACCTCTTTGGAGTTAATGCACCATTGATGCACCTGCTGCATTCCACTGGGTTTCATTTGTCTCTCTCAATATTTACATTTATTGGTCCTGGTCGAAGATTAATTCTTGACGGATTAAATAGTCTATTCAAGGGGTCTCCCAATATGAATACATTGGTCGGTTTGGGTGCTCTTTCATCCTTTGCAGTCAGCTCAATTGCAGCCTTCGTTCCAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_8263#0 ACCACTTCCTCCTCTCCCGCGGCCGCGGCAGCGGCGCGTGCGGGTGCCTCCCTCCGGCGC 60
consensus_8263#1 ------------------------------------------------------------
consensus_8263#0 CGCCCCCGCCCCGCCGCACTCCCTTCGCGGCCTCCTCCGCCTCGGCGTCAGCGGCGCGGC 120
consensus_8263#1 ------------------------------------------------------------
consensus_8263#0 GCCTCGCCGTACCCGGCGATCTCCTGCTCCTCTCGCTCGCGCGCCTCGCGCTCCGTGGCC 180
consensus_8263#1 ------------------------------------------------------------
consensus_8263#0 CGGCCCCGCGCGCGGAGGCGCGCCGATGGTTCGCGAGCCTCTCGGCGGCGTCGAACGGT- 239
consensus_8263#1 -------GCGGGCGGAAGCGCCCGCGAGCTTCGCAGGGAAC--GGCGGTGGCGGAGGAAG 51
*** ***** **** * * ***** * * ***** * ** * *
consensus_8263#0 CCACCGCGCGGCGGTGGAGGCGGGGGAGGCGGCGATGGGGGCGGTGGAGGGGGAGGCGGC 299
consensus_8263#1 CCTCCGGGCAGGAG-GCTGACGTCATAATCCTTGATGTTGGGGGGATGTCGTGTGGTGGA 110
** *** ** * * * * ** * * **** ** ** * * ** **
consensus_8263#0 GGCGGGTGGAAGCGCCC-GCGAGCTTCGCAGGGAACGGCGGTGGCGGAGGAAGCCTCCGG 358
consensus_8263#1 TGTGCA-GCAAGTGTCAAGCGCATTTTGGAGAGTGAGGTGA-AATAAGTTAAATCAGCTT 168
* * * *** * * *** ** * ** * ** * ** * *
consensus_8263#0 GCAGGAGGCTGACGT-CATAATCCTTGATGTTGGGGGGATGTCGTGTGGTGGATGTGCAG 417
consensus_8263#1 GCCTCTGCTTCACATGTAAAACTTTTGGCACGGTGTTACTAGCTTGCTAATTGTGTTTGT 228
** * * ** * * ** *** * * * * ** ***
consensus_8263#0 CAAGTGTCAAGCGCATTTTGGAGAGTGAGCCCCAAGTGCGGTCTGCAAATGTTAATCTTG 477
consensus_8263#1 AAGCCTGTATGCGCGTTGTTT---TTTAGCCCCAAGTGCGGTCTGCAAATGTTAATCTTG 285
* * **** ** * * *********************************
consensus_8263#0 CCACTGAGATGGCAGTCGTGTGGGCGGTGCCAGAAGATGAAAATGCGAAAAACTGGAAGC 537
consensus_8263#1 CCACTGAGATGGCAGTCGTGTGGGCGGTGCCAGAAGATGAAAATGCGAAAAACTGGAAGC 345
************************************************************
consensus_8263#0 TGCAGTTGGGTGAGAAGCTTGCCAACCAGTTGACAACATGTGGTTACAAATCCAACCTTC 597
consensus_8263#1 TGCAGTTGGGTGAGAAGCTTGCCAACCAGTTGACAACATGTGGTTACAAATCCAACCTTC 405
************************************************************
consensus_8263#0 GAGACTCTTCAAAAGCAAGTTCACAGACGGTTTTTGAAAGAAAGATGGATGAAAAACTTC 657
consensus_8263#1 GAGACTCTTCAAAAGCAAGTTCACAGACGGTTTTTGAAAGAAAGATGGATGAAAAACTTC 465
************************************************************
consensus_8263#0 AACAACTGAAACAAAGTGGTCGAGAACTTGCTGTATCTTGGGCATTATGTGCTGTTTGCC 717
consensus_8263#1 AACAACTGAAACAAAGTGGTCGAGAACTTGCTGTATCTTGGGCATTATGTGCTGTTTGCC 525
************************************************************
consensus_8263#0 TGCTTGGGCACATTTCTCACCTCTTTGGAGTTAATGCACCATTGATGCACCTGCTGCATT 777
consensus_8263#1 TGCTTGGGCACATTTCTCACCTCTTTGGAGTTAATGCACCATTGATGCACCTGCTGCATT 585
************************************************************
consensus_8263#0 CCACTGGGTTTCATTTGTCTCTCTCAATATTTACATTTATTGGTCCTGGTCGAAGATTAA 837
consensus_8263#1 CCACTGGGTTTCATTTGTCTCTCTCAATATTTACATTTATTGGTCCTGGTCGAAGATTAA 645
************************************************************
consensus_8263#0 TTCTTGACGGATTAAATAGTCTATTCAAGGGGTCTCCCAATATGAATACATTGGTCGGTT 897
consensus_8263#1 TTCTTGACGGATTAAATAGTCTATTCAAGGGGTCTCCCAATATGAATACATTGGTCGGTT 705
************************************************************
consensus_8263#0 TGGGTGCTCTTTCATCCTTTGCAGTCAGCTCAATTGCAGCCTTCGTTCCAAAGCTGGGGT 957
consensus_8263#1 TGGGTGCTCTTTCATCCTTTGCAGTCAGCTCAATTGCAGCCTTCGTTCCAA--------- 756
***************************************************
consensus_8263#0 GGAAGACATTTTTTGAGGAGCCGGTTATGTTAGTAGCTTTTGTTCTTCTTGGGAAGAACC 1017
consensus_8263#1 ------------------------------------------------------------
consensus_8263#0 TTGAGCAGAGGGCGAAGCTAAAAGCTACTAGTGATATGACTGGATTGCTCAATATTCTTC 1077
consensus_8263#1 ------------------------------------------------------------
consensus_8263#0 CATCAAAAGCACGCCTAATGGTGGACAATGATCCTGAGCAATCATCATTTACTGAGGTCC 1137
consensus_8263#1 ------------------------------------------------------------
consensus_8263#0 CATGCGATACCCTTTCTGTTGGAGACTATATTGTAGTGCTGCCTGGGGATCGTGTTCCAG 1197
consensus_8263#1 ------------------------------------------------------------
consensus_8263#0 CAGACGGTGTTGTCAAATCTGGACGGAGTACAGTTGATGAATCAAGTTTGACAGGTGAAC 1257
consensus_8263#1 ------------------------------------------------------------
consensus_8263#0 CTATGCCTGTAACAAAGATAGCAGGGACAGAAGTATCAGCAGGAAGCATTAACTTAAATG 1317
consensus_8263#1 ------------------------------------------------------------
consensus_8263#0 GTAAAATCACTGTTGAAGTTAGAAGACCTGGTGGTGAGACTGCCATGTCTGACATACTCC 1377
consensus_8263#1 ------------------------------------------------------------
consensus_8263#0 GTTTAGTGGAAGAAGCACAGACGAGNGNNGCCCCAGTTCAACGATTAGCTGACAAGGTTG 1437
consensus_8263#1 ------------------------------------------------------------
consensus_8263#0 CTGGGAACTTTACATATGGAGNTATGGCTCTTTCTGCTGCTACTTATACATTCTNNNNNA 1497
consensus_8263#1 ------------------------------------------------------------
consensus_8263#0 TTTTTGGTTCACAACTTGNNCCTGCTGCTATNNAGCATGGNNNNNCAATGGCT 1550
consensus_8263#1 -----------------------------------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||