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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8271#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 1596 fasta sequence
[TCCTCGATTTTTCTCCCGCAACTCACTGCGCCGCCGCGGAGAGGCAAACCCGAAGGAGACTAGGAGAGGAAGAGCTTCACCGCCTCCGCCTCCGGCAAGGAAAGCCAAAGCCAATCGAGGCCAAGAGCGAGGGGGAAGGAAGAAGAGGGGGGAAGGGAGAGATGCCGACGGTGACCTGCAACGCGTGCAACGCGGGGTTCGATGACGAGGAGCAGCAGCGCCTCCACTACCGCTCCGAGTGGCACCGCTACAACCTCAAGCGCAAGGTGGCTGGAGTTCCTGGAGTGACTGAGGCTCTGTTTTTGGCTAGACAAACTGCTTTAGCAGAGGGGAGCAACTCTGATAGCACTCCAATGCTCTACAGTTGTGCTCTTTGTGGAAAGGAGTACAGGAGCTCAAAAGCTCATGCCCAACATCTTAATTCACGATCACATCTCATGAAAGCTTCTCAGGAGCCTAATGCATCCATTGCTGGAATTACCATAGTCAAGCCTCGTCCTGAGCGAGTTCAACGCAGGGCTCCATCTGCAGTAGAAGAGGATGAAGATGAAGATGAGGAGGAAGAGTGGGTTGAAGTGGACCCAAGTGAGTTAGAGTCGACTTCGGAAATGCAAGTAGATGAGCATTCCTCCAAATCAGATGATGAGATAGATGAGTTTGAAGAGTTGGATCCCACATTCTGCTTCATGTGTGATCTTGAGCATGACACCATTGAGAATTGCATGGTCCACATGCACAAAAAGCATGGGTTTTTCATACCTGATAGCGAATACTTGAAAGATCCAAATGGTCTTCTTATATATGTTGGTCTGAAGGTGAAGCGTGATTTTATATGCCTATACTGCAATGACAGATGCCAGCCTTTCCAAAGTCTAGAGGCTGTGAGAAAGCATATGGATGCAAAAGGACACTGCAAAGTACGATATGGAGATGGTGGGGATGATGAAGATGCTGACCTTGAAGATTTCTATGATTACAGCAGCAGTTATGCTGATGTGGAGGGTAAGGAGTTGGTTGCTGCAGATGACAAGGATAACATTGAACTGGGAAGTGGTGGGGCTGAGCTTGTAATAACGAACAAGAGTGAGAAAGGAACTCGTGTCAGAACTCTTGGTTCTCGGGAATTTATTCGCTACTATCGCCAGAAACCACGTCCTTCTGTTGCAACAGATCGTGCTCTTGCGCTTTCTCTGGCTTCCAGCTACAAGAGCATGGGTCTGGTGACAGTTCAGTCAAAGGAGCAAGTTGTAAGGCTGAAAGTTCTCCGCGCAATGAACAAGACAGGTGTGGAGACCATGCGAACCAAGATTGGAATGAAGAGCAACGTGATCCGCAATCTCCCCAAGAACTGCCCATATTAGTCGATGCCACCTGTTGCAGGATCAAAGCCCTTGGAGCTCCAGCATCATCTTTGTGGCAATGGCTGTTTTTTTGTGCATCTGCTAGCCATGGCAGAGAGCTTGTGATATTCGCAAAAACAATAGATCTTTATATTGTTTAATTTGCACCTCAAATGAGAGTATCATGCTTACTGGAAACAAGACTGTATCCGGTATAAGAGTTATGACTTCGGTAAACACATCACCTTCTGTAAAA]
[+] EMBL AK103176 [TCCTCGATTTTTCTCCCGCAACTCACTGCGCCGCCGCGGAGAGGCAAACCCGAAGGAGACTAGGAGAGGAAGAGCTTCACCGCCTCCGCCTCCGGCAAGGAAAGCCAAAGCCAATCGAGGCCAAGAGCGAGGGGGAAGGAAGAAGAGGGGGGAAGGGAGAGATGCCGACGGTGACCTGCAACGCGTGCAACGCGGGGTTCGATGACGAGGAGCAGCAGCGCCTCCACTACCGCTCCGAGTGGCACCGCTACAACCTCAAGCGCAAGGTGGCTGGAGTTCCTGGAGTGACTGAGGCTCTGTTTTTGGCTAGACAAACTGCTTTAGCAGAGGGGAGCAACTCTGATAGCACTCCAATGCTCTACAGTTGTGCTCTTTGTGGAAAGGAGTACAGGAGCTCAAAAGCTCATGCCCAACATCTTAATTCACGATCACATCTCATGAAAGCTTCTCAGGAGCCTAATGCATCCATTGCTGGAATTACCATAGTCAAGCCTCGTCCTGAGCGAGTTCAACGCAGGGCTCCATCTGCAGTAGAAGAGGATGAAGATGAAGATGAGGAGGAAGAGTGGGTTGAAGTGGACCCAAGTGAGTTAGAGTCGACTTCGGAAATGCAAGTAGATGAGCATTCCTCCAAATCAGATGATGAGATAGATGAGTTTGAAGAGTTGGATCCCACATTCTGCTTCATGTGTGATCTTGAGCATGACACCATTGAGAATTGCATGGTCCACATGCACAAAAAGCATGGGTTTTTCATACCTGATAGCGAATACTTGAAAGATCCAAATGGTCTTCTTATATATGTTGGTCTGAAGGTGAAGCGTGATTTTATATGCCTATACTGCAATGACAGATGCCAGCCTTTCCAAAGTCTAGAGGCTGTGAGAAAGCATATGGATGCAAAAGGACACTGCAAAGTACGATATGGAGATGGTGGGGATGATGAAGATGCTGACCTTGAAGATTTCTATGATTACAGCAGCAGTTATGCTGATGTGGAGGGTAAGGAGTTGGTTGCTGCAGATGACAAGGATAACATTGAACTGGGAAGTGGTGGGGCTGAGCTTGTAATAACGAACAAGAGTGAGAAAGGAACTCGTGTCAGAACTCTTGGTTCTCGGGAATTTATTCGCTACTATCGCCAGAAACCACGTCCTTCTGTTGCAACAGATCGTGCTCTTGCGCTTTCTCTGGCTTCCAGCTACAAGAGCATGGGTCTGGTGACAGTTCAGTCAAAGGAGCAAGTTGTAAGGCTGAAAGTTCTCCGCGCAATGAACAAGACAGGTGTGGAGACCATGCGAACCAAGATTGGAATGAAGAGCAACGTGATCCGCAATCTCCCCAAGAACTGCCCATATTAGTCGATGCCACCTGTTGCAGGATCAAAGCCCTTGGAGCTCCAGCATCATCTTTGTGGCAATGGCTGTTTTTTTGTGCATCTGCTAGCCATGGCAGAGAGCTTGTGATATTCGCAAAAACAATAGATCTTTATATTGTTTAATTTGCACCTCAAATGAGAGTATCATGCTTACTGGAAACAAGACTGTATCCGGTATAAGAGTTATGACTTCGGTAAACACATCACCTTCTGT ]
[+] EMBL CF313557 [ TCCCGCAACTCACTGCGCCGCCGCGGAGAGGCAAACCCGAAGGAGACTAGGAGAGGAAGAGCTTCACCGCCTCCGCCTCCGGCAAGGAAAGCCAAAGCCAATCGAGGCCAAGAGCGAGGGGGAAGGAAGAAGAGGGGGGAAGGGAGAGATGCCGACGGTGACCTGCAACGCGTGCAACGCGGGGTTCGATGACGAGGAGCAGCAGCGCCTCCACTACCGCTCCGAGTGGCACCGCTACAACCTCAAGCGCAAGGTGGCTGGAGTTCCTGGAGTGACTGAGGCTCTGTTTTTGGCTAGACAAACTGCTTTAGCAGAGGGGAGCAACTCTGATAGCACTCCAATGCTCTACAGTTGTGCTCTTTGTGGAAAGGAGTACAGGAGCTCAAAAGCTCATGCCCAACATCTTAATTCACGATCACATCTCATGAAAGCTTCTCAGGAGCCTAATGCATCCATTGCTGGAATTACCATAGTCAAGCCTCGTCCTGAGCGAGTTCAACGCAGGGCTCCATCTGCAGTAGAAGAGGATGAAG ]
[+] EMBL C28472 [ TCCCGCAACTCACTGCGCCGCCG GGAGAGNANAACCCGAA GAGACTAGGAGAGGAAGAGCTTCACCGCCTCCGCCTCC GCAAGGAAAGCCAAAGCCAATCGAGGCCAAGAGCGAGGGGGAAGGAAGAAGAGGGGGGAAGGGAGAGATGCCGACGGTGACCTGCAACG GTGCAACG GNGTTTCGATGACGAGGAGCAGCAGCGNCTCCACTACCGCTCCGAGTGGCACCGCTACAACCTCAAGCGCAAGGTNGCTGGAGTTCCTGGAGTGACTGAGGCTCTGTTTTTGGCTAGACAAACTGCTTTA NAGAGGGGAGCAACTCTGATAG ACTNCAATGCTCT CAGTTGTGCTCTTTGTGGAAAGGAG NCAGGAGCT AAAAG TCATG CCAACAT TTAATTaa ]
[-] EMBL CF313558 [ CTACAAGAGCATGGGTCTGGTGACAGTTCAGTCAAAGGAGCAAGTTGTAAGGCTGAAAGTTCTCCGCGCAATGAACAAGACAGGTGTGGAGACCATGCGAACCAAGATTGGAATGAAGAGCAACGTGATCCGCAATCTCCCCAAGAACTGCCCATATTAGTCGATGCCACCTGTTGCAGGATCAAAGCCCTTGAAAAAACAGCATCATCTTTGTGGCAATGGCTG TTTTTTGTGCATCAGCAAACCATGGCAGAGAGCTTGTGATATTCGCAAAAACAATAGATCTTTATATTGTTTAATTTGCACCTCAAATGAGAGTATCATGCTTACTGGAAACAAGACTGTATCCGGTATAAGAGTTATGACTTCGGTAAACACATCACCTTCAAAAAAA]
consensusID : consensus_8271#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 249 fasta sequence
[ACCAAGATTGGAATGAAGAGCAACGTGATCCGCAATCTCCCCAAGAACTGCCCATATTAGTCGATGCCACCTGTTGCAGGATCAAAGCCCTTGGAGCTCCAGCATCATCTTTGTGGCAATGGCTGTTTTTTGTGCATNTGCTAGCCATGGCAGAGAGCTTGTGATATTCGCAAAAACAATAGATCTTTATATTGTTTAATTTGCACCTCAAATGAGAGTATCATGCTTACTGGAAAAAAAAAAAAAAAA]
[+] EMBL AU092974 [ACCAAGATTGGAATGAAGAGCAACGTGATCCGCAATCTCCCCAAGAACTGCCCATATTAGTCGATGCCACCTGTTGCAGGATCAAAGCCCTTGGAGCTCCAGCATCATCTTTGTGGCAATGGCTGTTTTTTGTGCATNTGCTAGCCATGGCAGAGAGCTTGTGATATTCGCAAAAACAATAGATCTTTATATTGTTTAATTTGCACCTCAAATGAGAGTATCATGCTTACTGGAAAAAAAAAAAAAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_8271#0 TCCTCGATTTTTCTCCCGCAACTCACTGCGCCGCCGCGGAGAGGCAAACCCGAAGGAGAC 60
consensus_8271#1 ------------------------------------------------------------
consensus_8271#0 TAGGAGAGGAAGAGCTTCACCGCCTCCGCCTCCGGCAAGGAAAGCCAAAGCCAATCGAGG 120
consensus_8271#1 ------------------------------------------------------------
consensus_8271#0 CCAAGAGCGAGGGGGAAGGAAGAAGAGGGGGGAAGGGAGAGATGCCGACGGTGACCTGCA 180
consensus_8271#1 ------------------------------------------------------------
consensus_8271#0 ACGCGTGCAACGCGGGGTTCGATGACGAGGAGCAGCAGCGCCTCCACTACCGCTCCGAGT 240
consensus_8271#1 ------------------------------------------------------------
consensus_8271#0 GGCACCGCTACAACCTCAAGCGCAAGGTGGCTGGAGTTCCTGGAGTGACTGAGGCTCTGT 300
consensus_8271#1 ------------------------------------------------------------
consensus_8271#0 TTTTGGCTAGACAAACTGCTTTAGCAGAGGGGAGCAACTCTGATAGCACTCCAATGCTCT 360
consensus_8271#1 ------------------------------------------------------------
consensus_8271#0 ACAGTTGTGCTCTTTGTGGAAAGGAGTACAGGAGCTCAAAAGCTCATGCCCAACATCTTA 420
consensus_8271#1 ------------------------------------------------------------
consensus_8271#0 ATTCACGATCACATCTCATGAAAGCTTCTCAGGAGCCTAATGCATCCATTGCTGGAATTA 480
consensus_8271#1 ------------------------------------------------------------
consensus_8271#0 CCATAGTCAAGCCTCGTCCTGAGCGAGTTCAACGCAGGGCTCCATCTGCAGTAGAAGAGG 540
consensus_8271#1 ------------------------------------------------------------
consensus_8271#0 ATGAAGATGAAGATGAGGAGGAAGAGTGGGTTGAAGTGGACCCAAGTGAGTTAGAGTCGA 600
consensus_8271#1 ------------------------------------------------------------
consensus_8271#0 CTTCGGAAATGCAAGTAGATGAGCATTCCTCCAAATCAGATGATGAGATAGATGAGTTTG 660
consensus_8271#1 ------------------------------------------------------------
consensus_8271#0 AAGAGTTGGATCCCACATTCTGCTTCATGTGTGATCTTGAGCATGACACCATTGAGAATT 720
consensus_8271#1 ------------------------------------------------------------
consensus_8271#0 GCATGGTCCACATGCACAAAAAGCATGGGTTTTTCATACCTGATAGCGAATACTTGAAAG 780
consensus_8271#1 ------------------------------------------------------------
consensus_8271#0 ATCCAAATGGTCTTCTTATATATGTTGGTCTGAAGGTGAAGCGTGATTTTATATGCCTAT 840
consensus_8271#1 ------------------------------------------------------------
consensus_8271#0 ACTGCAATGACAGATGCCAGCCTTTCCAAAGTCTAGAGGCTGTGAGAAAGCATATGGATG 900
consensus_8271#1 ------------------------------------------------------------
consensus_8271#0 CAAAAGGACACTGCAAAGTACGATATGGAGATGGTGGGGATGATGAAGATGCTGACCTTG 960
consensus_8271#1 ------------------------------------------------------------
consensus_8271#0 AAGATTTCTATGATTACAGCAGCAGTTATGCTGATGTGGAGGGTAAGGAGTTGGTTGCTG 1020
consensus_8271#1 ------------------------------------------------------------
consensus_8271#0 CAGATGACAAGGATAACATTGAACTGGGAAGTGGTGGGGCTGAGCTTGTAATAACGAACA 1080
consensus_8271#1 ------------------------------------------------------------
consensus_8271#0 AGAGTGAGAAAGGAACTCGTGTCAGAACTCTTGGTTCTCGGGAATTTATTCGCTACTATC 1140
consensus_8271#1 ------------------------------------------------------------
consensus_8271#0 GCCAGAAACCACGTCCTTCTGTTGCAACAGATCGTGCTCTTGCGCTTTCTCTGGCTTCCA 1200
consensus_8271#1 ------------------------------------------------------------
consensus_8271#0 GCTACAAGAGCATGGGTCTGGTGACAGTTCAGTCAAAGGAGCAAGTTGTAAGGCTGAAAG 1260
consensus_8271#1 ------------------------------------------------------------
consensus_8271#0 TTCTCCGCGCAATGAACAAGACAGGTGTGGAGACCATGCGAACCAAGATTGGAATGAAGA 1320
consensus_8271#1 -----------------------------------------ACCAAGATTGGAATGAAGA 19
*******************
consensus_8271#0 GCAACGTGATCCGCAATCTCCCCAAGAACTGCCCATATTAGTCGATGCCACCTGTTGCAG 1380
consensus_8271#1 GCAACGTGATCCGCAATCTCCCCAAGAACTGCCCATATTAGTCGATGCCACCTGTTGCAG 79
************************************************************
consensus_8271#0 GATCAAAGCCCTTGGAGCTCCAGCATCATCTTTGTGGCAATGGCTGTTTTTTTGTGCATC 1440
consensus_8271#1 GATCAAAGCCCTTGGAGCTCCAGCATCATCTTTGTGGCAATGGCTGTTTTTT-GTGCATN 138
**************************************************** ******
consensus_8271#0 TGCTAGCCATGGCAGAGAGCTTGTGATATTCGCAAAAACAATAGATCTTTATATTGTTTA 1500
consensus_8271#1 TGCTAGCCATGGCAGAGAGCTTGTGATATTCGCAAAAACAATAGATCTTTATATTGTTTA 198
************************************************************
consensus_8271#0 ATTTGCACCTCAAATGAGAGTATCATGCTTACTGGAAACAAGACTGTATCCGGTATAAGA 1560
consensus_8271#1 ATTTGCACCTCAAATGAGAGTATCATGCTTACTGGAAAAAAAAAAAAAAAA--------- 249
************************************** ** * *
consensus_8271#0 GTTATGACTTCGGTAAACACATCACCTTCTGTAAAA 1596
consensus_8271#1 ------------------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||