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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8274#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 1731 fasta sequence
[CCCATTCCCCACCGCCGAACTCGGCCCGTTCTCTCAAAAAAAAAAAAAAAACTCGGCTGGGTTCTTCTCAGTTCTCTCCTCTCCTCTCGTCTCGTCCTCCGCCTCTAGCGAGAACTGAGACGGTGAAGGGGTGGATACTGGAGACTGGAAAATCCATGAATCCATCCAGAGTCGGATTGGTTTCTCGCTCTTTCCCTCCCTCCTGATCTTATTTCAAACCATTCAGTTTTTGTTGCGATTTTGCTGCTTGGGTGGTGGTGGAGCAATGGAAGGGTTTCTGCATCGCCGGAAACCAACCACGACGATGACGACGACGAGGAGGAGGAGGAAGATGCCGTTGCTTCCGGCGAGTCTCCCGAGCAGCGGCGGCCGCCTCGGATCTCCGCCATCCCCCCCGCCGAGCTGCGCCTCGCCGGCGTTGGCACGGAGGCCACCGCTTCGGCAGCCGCAGATGCCGCGGGCGCATGCGGCGGCGGGGGATGGGGGACCCCGTGCGTCGGCTTCCTGCTCGGGGGCTTGGCCCGGGCAACGAAATCTGACCGCCATTGATGGTTTTCCCCCACCATTTGGTCGCCATTTTACTGTACATTGCCTGCGCCGATCTCCATCCATCCCGCGAGCATCCTCGCTCGCTGGCCAGTATCTGTACTTTGTCTGGAATTTGCTTGCGTTAACCCTAGCTTCTCTTCTAGATCTGGAAACTGCCTTTTGTCACATTTTATTTCCCCCAAAATGTGGGGGTTCAAGTTCAGCTGAACCCCATGCTCAGCGAGTCGCGAGGCGATTGCAACATCGGCCATTTCATCTCCGCTAGCGGTGGCTGATGATGGCATTCGCTCCAAAAAACCGCGGCTCGTTTGAAGAGTTGCAAATAGTTTACACCCCTGGATCTAAACACACCCTGAATTCCCCGCGGCGATGAGGAATGAGGCCGGTTTAGCTCCGGCGCCTCTCCTGATCGGTGGCGGCCGCCTCGGATTTCCGCTTTTCGGGGGCCAATCCCCAGCCGCGTCGCGCACGCCGTGCGGCATTGGTCTGGAGGCCACTGCTTTGGCAGCTGCCGATGTCGCGGCGCCTGCGGCGGTGGAGGATGGGGACCGTGCGTGGCGGTATCCGCGTTGGCTTCCTGCCCAGGGTTGGCCGAGCAACGCAAAATCTGAGCCGCAATTGTTGGATTTTTCACTAGCCCGTGCGTTGCAATGGAAAAAAAAAACAAATTGAGTTTCTAGCTTATTTAGTATAAGCACAGCAATACTTCTATGATGATTTTCCTTATTGAACAAGTAGGTGATTTCGAAATTCAAAAGAACCAACGGTGAAATGGAAAGGGCTCTTTGGAGGGTGGCGTGATAATATTGTGGGTAAACATTTTAAGTAGGATTGATTTAGTCGCCATTTTGTTGCACATTGCTACCCCTCTTTCTCCTCCCTCTCTTTCTCCGCGTGCTTGCGTGAGAGAGAAAGCTGGTACTACTTACTCTGCTTAGAGCAAGTTTAATAGTATAGCTAACTACTACTCCCTCCGTTTCACAATGCAAGTCATTTTAGTATTTCCCACATTCATATTGATGTTGATGAATCTAGACATATATATCTATCTAGATTCATTAACATCAATATGCATGTGGGAAATACTAGAATGACTTACATTGTGAAACGGAGGAAGTACTATCTTCATGGGTGTGTGTTTTGAGCTCGAGCTGAGCTTTGACTGCCCTACTTCCAAGTTCC]
[+] EMBL AK106303 [CCCATTCCCCACCGCCGAACTCGGCCCGTTCTCTCAAAAAAAAAAAAAAAACTCGGCTGGGTTCTTCTCAGTTCTCTCCTCTCCTCTCGTCTCGTCCTCCGCCTCTAGCGAGAACTGAGACGGTGAAGGGGTGGATACTGGAGACTGGAAAATCCATGAATCCATCCAGAGTCGGATTGGTTTCTCGCTCTTTCCCTCCCTCCTGATCTTATTTCAAACCATTCAGTTTTTGTTGCGATTTTGCTGCTTGGGTGGTGGTGGAGCAATGGAAGGGTTTCTGCATCGCCGGAAACCAACCACGACGATGACGACGACGAGGAGGAGGAGGAAGATGCCGTTGCTTCCGGCGAGTCTCCCGAGCAGCGGCGGCCGCCTCGGATCTCCGCCATCCCCCCCGCCGAGCTGCGCCTCGCCGGCGTTGGCACGGAGGCCACCGCTTCGGCAGCCGCAGATGCCGCGGGCGCATGCGGCGGCGGGGGATGGGGGACCCCGTGCGTCGGCTTCCTGCTCGGGGGCTTGGCCCGGGCAACGAAATCTGACCGCCATTGATGGTTTTCCCCCACCATTTGGTCGCCATTTTACTGTACATTGCCTGCGCCGATCTCCATCCATCCCGCGAGCATCCTCGCTCGCTGGCCAGTATCTGTACTTTGTCTGGAATTTGCTTGCGTTAACCCTAGCTTCTCTTCTAGATCTGGAAACTGCCTTTTGTCACATTTTATTTCCCCCAAAATGTGGGGGTTCAAGTTCAGCTGAACCCCATGCTCAGCGAGTCGCGAGGCGATTGCAACATCGGCCATTTCATCTCCGCTAGCGGTGGCTGATGATGGCATTCGCTCCAAAAAACCGCGGCTCGTTTGAAGAGTTGCAAATAGTTTACACCCCTGGATCTAAACACACCCTGAATTCCCCGCGGCGATGAGGAATGAGGCCGGTTTAGCTCCGGCGCCTCTCCTGATCGGTGGCGGCCGCCTCGGATTTCCGCTTTTCGGGGGCCAATCCCCAGCCGCGTCGCGCACGCCGTGCGGCATTGGTCTGGAGGCCACTGCTTTGGCAGCTGCCGATGTCGCGGCGCCTGCGGCGGTGGAGGATGGGGACCGTGCGTGGCGGTATCCGCGTTGGCTTCCTGCCCAGGGTTGGCCGAGCAACGCAAAATCTGAGCCGCAATTGTTGGATTTTTCACTAGCCCGTGCGTTGCAATGGAAAAAAAAAACAAATTGAGTTTCTAGCTTATTTAGTATAAGCACAGCAATACTTCTATGATGATTTTCCTTATTGAACAAGTAGGTGATTTCGAAATTCAAAAGAACCAACGGTGAAATGGAAAGGGCTCTTTGGAGGGTGGCGTGATAATATTGTGGGTAAACATTTTAAGTAGGATTGATTTAGTCGCCATTTTGTTGCACATTGCTACCCCTCTTTCTCCTCCCTCTCTTTCTCCGCGTGCTTGCGTGAGAGAGAAAGCTGGTACTACTTACTCTGCTTAGAGCAAGTTTAATAGTATAGCTAACTACTACTCCCTCCGTTTCACAATGCAAGTCATTTTAGTATTTCCCACATTCATATTGATGTTGATGAATCTAGACATATATATCTATCTAGATTCATTAACATCAATATGCATGTGGGAAATACTAGAATGACTTACATTGTGAAACGGAGGAAGTACTATCTTCATGGGTGTGTGTTTTGAGCTCGAGCTGAGCTTTGACTGCCCTACTTCCAAGTTCC]
[+] EMBL AA752361 [ CACCGCCGAACTCGGCCCGTTCTCTCAAAAAAAAAAAAAAAACTCGGCTGGGTTCTTCTCAGTTCTCTCCTCTCCTCTCGTCTCGTCCTCCGCCTCTAGCGAGAACTGAGACGGTGAAGGGGTGGATACTGGAGACTGGAAAATCCATGAATCCATCCAAAGTCGGATTGGTTTCTCGCTCTTTCCCTCCCTCCTGATCTTATTTC ]
[+] EMBL BI796121 [ AAACTCGGTTGGGTTCTTCTCAGTTCTCTCCTCTCCTCTCCTCTCGTCCTCCGCCTCTAGCGAGAACTGAGACGGTGAAGGGGTGGATACTGGAGACTGGAAAATCCATGAATCCATCCAGAGTCGGATTGGTTTCTCGCTCTTTCCCTCTCTCCTGATCTTATTTCAAACCATTCAGTTTTTGTTGCGATTTTGCTGCTTGGGTGGTGGTGGAGCAATGGAAGGGTTTCTGCATCGCCGGAAACCAACCACGACGATGACGACGACGAGGAGGAGGAGGAAGATGCCGTTGCTTCCGGCGAGTCT ]
[+] EMBL AK063675 [ GCTGCTTGGGTGGTGGTGGAGCAATGGAAGGGTTTCTGCATCGCCGGAAACCAACCACGACGATGACGACGACGAGGAGGAGGAGGAAGATGCCGTTGCTTCCGGCGAGTCTCCCGAGCAGCGGCGGCCGCCTCGGATCTCCGCCATCCCCCCCGCCGAGCTGCGCCTCGCCGGCGTTGGCACGGAGGCCACCGCTTCGGCAGCCGCAGATGCCGCGGGCGCATGCGGCGGCGGGGGATGGGGGACCCCGTGCGTCGGCTTCCTGCTCGGGGGCTTGGCCCGGGCAACGAAATCTGACCGCCATTGATGGTTTTCCCCCACCATTTGGTCGCCATTTTACTGTACATTGCCTGCGCCGATCTCCATCCATCCCGCGAGCATCCTCGCTCGCTGGCCAGTATCTGTACTTTGTCTGGAATTTGCTTGCGTTAACCCTAGCTTCTCTTCTAGATCTGGAAACTGCCTTTTGTCACATTTTATTTCCCCCAAAATGTGGGGGTTCAAGTTCAGCTGAACCCCATGCTCAGCGAGTCGCGAGGCGATTGCAACATCGGCCATTTCATCTCCGCTAGCGGTGGCTGATGATGGCATTCGCTCCAAAAAACCGCGGCTCGTTTGAAGAGTTGCAAATAGTTTACACCCCTGGATCTAAACACACCCTGAATTCCCCGCGGCGATGAGGAATGAGGCCGGTTTAGCTCCGGCGCCTCTCCTGATCGGTGGCGGCCGCCTCGGATTTCCGCTTTTCGGGGGCCAATCCCCAGCCGCGTCGCGCACGCCGTGCGGCATTGGTCTGGAGGCCACTGCTTTGGCAGCTGCCGATGTCGCGGCGCCTGCGGCGGTGGAGGATGGGGACCGTGCGTGGCGGTATCCGCGTTGGCTTCCTGCCCAGGGTTGGCCGAGCAACGCAAAATCTGAGCCGCAATTGTTGGATTTTTCACTAGCC ]
consensusID : consensus_8274#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 537 fasta sequence
[TGGAATTTGCTTGCGTTAACCCTAGCTTCTCTTCTAGATCTGGAAACTGCCTTTTGTCACATTTTATTTCCCCCAAAATGTGGGGGTTCAAGTTCAGCTGAACCCCATGCTCAGCGAGTCGCGAGGCGATTGCAACATCGGCCATTTCATCTCCGCTAGCGGTGGCTGATGATGGCATTCGCTCCAAAAAACCGCGGCTCGTTTGAAGAGTTGCAAATAGTTTACACCCCTGGATCTAAACACACCCTGAATTCCCCGCGGCGATGAGGAATGAGGCCGGTTTAGCTCCGGCGCCTCTCCTGATCGGTGGCGGCCGCCTCGGATTTCCGCTTTTCGGGGGCCAATCCCCAGCCGCGTCGCGCACGCCGTGCGGCATTGGTCTGGAGGCCACTGCTTTGGCAGCTGCCGATGTCGCGGCGCCTGCGGCGGTGGAGGATGGGGACCGTGCGTGGCGGTATCCGCGTTGGCTTCCTGCCCAGGGTTGGCCGAGCAACGCAAAATCTGAGCCGCAATTGTTGGACTATTTATACATTTTCA]
[+] EMBL AK063001 [TGGAATTTGCTTGCGTTAACCCTAGCTTCTCTTCTAGATCTGGAAACTGCCTTTTGTCACATTTTATTTCCCCCAAAATGTGGGGGTTCAAGTTCAGCTGAACCCCATGCTCAGCGAGTCGCGAGGCGATTGCAACATCGGCCATTTCATCTCCGCTAGCGGTGGCTGATGATGGCATTCGCTCCAAAAAACCGCGGCTCGTTTGAAGAGTTGCAAATAGTTTACACCCCTGGATCTAAACACACCCTGAATTCCCCGCGGCGATGAGGAATGAGGCCGGTTTAGCTCCGGCGCCTCTCCTGATCGGTGGCGGCCGCCTCGGATTTCCGCTTTTCGGGGGCCAATCCCCAGCCGCGTCGCGCACGCCGTGCGGCATTGGTCTGGAGGCCACTGCTTTGGCAGCTGCCGATGTCGCGGCGCCTGCGGCGGTGGAGGATGGGGACCGTGCGTGGCGGTATCCGCGTTGGCTTCCTGCCCAGGGTTGGCCGAGCAACGCAAAATCTGAGCCGCAATTGTTGGACTATTTATACATTTTCA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_8274#0 CCCATTCCCCACCGCCGAACTCGGCCCGTTCTCTCAAAAAAAAAAAAAAAACTCGGCTGG 60
consensus_8274#1 ------------------------------------------------------------
consensus_8274#0 GTTCTTCTCAGTTCTCTCCTCTCCTCTCGTCTCGTCCTCCGCCTCTAGCGAGAACTGAGA 120
consensus_8274#1 ------------------------------------------------------------
consensus_8274#0 CGGTGAAGGGGTGGATACTGGAGACTGGAAAATCCATGAATCCATCCAGAGTCGGATTGG 180
consensus_8274#1 ------------------------------------------------------------
consensus_8274#0 TTTCTCGCTCTTTCCCTCCCTCCTGATCTTATTTCAAACCATTCAGTTTTTGTTGCGATT 240
consensus_8274#1 ------------------------------------------------------------
consensus_8274#0 TTGCTGCTTGGGTGGTGGTGGAGCAATGGAAGGGTTTCTGCATCGCCGGAAACCAACCAC 300
consensus_8274#1 ------------------------------------------------------------
consensus_8274#0 GACGATGACGACGACGAGGAGGAGGAGGAAGATGCCGTTGCTTCCGGCGAGTCTCCCGAG 360
consensus_8274#1 ------------------------------------------------------------
consensus_8274#0 CAGCGGCGGCCGCCTCGGATCTCCGCCATCCCCCCCGCCGAGCTGCGCCTCGCCGGCGTT 420
consensus_8274#1 ------------------------------------------------------------
consensus_8274#0 GGCACGGAGGCCACCGCTTCGGCAGCCGCAGATGCCGCGGGCGCATGCGGCGGCGGGGGA 480
consensus_8274#1 ------------------------------------------------------------
consensus_8274#0 TGGGGGACCCCGTGCGTCGGCTTCCTGCTCGGGGGCTTGGCCCGGGCAACGAAATCTGAC 540
consensus_8274#1 ------------------------------------------------------------
consensus_8274#0 CGCCATTGATGGTTTTCCCCCACCATTTGGTCGCCATTTTACTGTACATTGCCTGCGCCG 600
consensus_8274#1 ------------------------------------------------------------
consensus_8274#0 ATCTCCATCCATCCCGCGAGCATCCTCGCTCGCTGGCCAGTATCTGTACTTTGTCTGGAA 660
consensus_8274#1 -------------------------------------------------------TGGAA 5
*****
consensus_8274#0 TTTGCTTGCGTTAACCCTAGCTTCTCTTCTAGATCTGGAAACTGCCTTTTGTCACATTTT 720
consensus_8274#1 TTTGCTTGCGTTAACCCTAGCTTCTCTTCTAGATCTGGAAACTGCCTTTTGTCACATTTT 65
************************************************************
consensus_8274#0 ATTTCCCCCAAAATGTGGGGGTTCAAGTTCAGCTGAACCCCATGCTCAGCGAGTCGCGAG 780
consensus_8274#1 ATTTCCCCCAAAATGTGGGGGTTCAAGTTCAGCTGAACCCCATGCTCAGCGAGTCGCGAG 125
************************************************************
consensus_8274#0 GCGATTGCAACATCGGCCATTTCATCTCCGCTAGCGGTGGCTGATGATGGCATTCGCTCC 840
consensus_8274#1 GCGATTGCAACATCGGCCATTTCATCTCCGCTAGCGGTGGCTGATGATGGCATTCGCTCC 185
************************************************************
consensus_8274#0 AAAAAACCGCGGCTCGTTTGAAGAGTTGCAAATAGTTTACACCCCTGGATCTAAACACAC 900
consensus_8274#1 AAAAAACCGCGGCTCGTTTGAAGAGTTGCAAATAGTTTACACCCCTGGATCTAAACACAC 245
************************************************************
consensus_8274#0 CCTGAATTCCCCGCGGCGATGAGGAATGAGGCCGGTTTAGCTCCGGCGCCTCTCCTGATC 960
consensus_8274#1 CCTGAATTCCCCGCGGCGATGAGGAATGAGGCCGGTTTAGCTCCGGCGCCTCTCCTGATC 305
************************************************************
consensus_8274#0 GGTGGCGGCCGCCTCGGATTTCCGCTTTTCGGGGGCCAATCCCCAGCCGCGTCGCGCACG 1020
consensus_8274#1 GGTGGCGGCCGCCTCGGATTTCCGCTTTTCGGGGGCCAATCCCCAGCCGCGTCGCGCACG 365
************************************************************
consensus_8274#0 CCGTGCGGCATTGGTCTGGAGGCCACTGCTTTGGCAGCTGCCGATGTCGCGGCGCCTGCG 1080
consensus_8274#1 CCGTGCGGCATTGGTCTGGAGGCCACTGCTTTGGCAGCTGCCGATGTCGCGGCGCCTGCG 425
************************************************************
consensus_8274#0 GCGGTGGAGGATGGGGACCGTGCGTGGCGGTATCCGCGTTGGCTTCCTGCCCAGGGTTGG 1140
consensus_8274#1 GCGGTGGAGGATGGGGACCGTGCGTGGCGGTATCCGCGTTGGCTTCCTGCCCAGGGTTGG 485
************************************************************
consensus_8274#0 CCGAGCAACGCAAAATCTGAGCCGCAATTGTTGGATTTTTCACTAGCCCGTGCGTTGCAA 1200
consensus_8274#1 CCGAGCAACGCAAAATCTGAGCCGCAATTGTTGGACTATTTATACATTTTCA-------- 537
*********************************** * ** *
consensus_8274#0 TGGAAAAAAAAAACAAATTGAGTTTCTAGCTTATTTAGTATAAGCACAGCAATACTTCTA 1260
consensus_8274#1 ------------------------------------------------------------
consensus_8274#0 TGATGATTTTCCTTATTGAACAAGTAGGTGATTTCGAAATTCAAAAGAACCAACGGTGAA 1320
consensus_8274#1 ------------------------------------------------------------
consensus_8274#0 ATGGAAAGGGCTCTTTGGAGGGTGGCGTGATAATATTGTGGGTAAACATTTTAAGTAGGA 1380
consensus_8274#1 ------------------------------------------------------------
consensus_8274#0 TTGATTTAGTCGCCATTTTGTTGCACATTGCTACCCCTCTTTCTCCTCCCTCTCTTTCTC 1440
consensus_8274#1 ------------------------------------------------------------
consensus_8274#0 CGCGTGCTTGCGTGAGAGAGAAAGCTGGTACTACTTACTCTGCTTAGAGCAAGTTTAATA 1500
consensus_8274#1 ------------------------------------------------------------
consensus_8274#0 GTATAGCTAACTACTACTCCCTCCGTTTCACAATGCAAGTCATTTTAGTATTTCCCACAT 1560
consensus_8274#1 ------------------------------------------------------------
consensus_8274#0 TCATATTGATGTTGATGAATCTAGACATATATATCTATCTAGATTCATTAACATCAATAT 1620
consensus_8274#1 ------------------------------------------------------------
consensus_8274#0 GCATGTGGGAAATACTAGAATGACTTACATTGTGAAACGGAGGAAGTACTATCTTCATGG 1680
consensus_8274#1 ------------------------------------------------------------
consensus_8274#0 GTGTGTGTTTTGAGCTCGAGCTGAGCTTTGACTGCCCTACTTCCAAGTTCC 1731
consensus_8274#1 ---------------------------------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||