cluster # 8276

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Oryza sativa
cluster # 8276 cluster # 8276 Sequences # 5 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_8276#0 length = 696 sequences # 3

consensus_8276#1 length = 496 sequences # 2

consensusID : consensus_8276#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 696
fasta sequence

                              [CCGCGCCATCTTCATCACCACGACCTCCTCTCCATTTACCCTCAAGAACCCCGGATAATGGTGCACCGGAGAGGGAGATCAAACCCCTTCTTCCTCGGCGCCCACCGCCGTTGCCATGGCCGACTCCGCCTTTACCGGTGAGCCATTGGTCGATTGCTTGCAGTAGTAGCAACCTGGGATGGTGTTTCACATGTTGCATGAAATGATTTTGGCATGCATGCTGTGGATCGAGCCATCGCCGTGACGCCAAGCTCTCCATCGCCTCCAAGCCGTCCCGCGAGCTGCTGCTGCCGTCCAAGCTTTGCTAGCATTGTCAGGCCCCTCGATGATTGCATAAACGGTGAAGAAGTGAATTAGGTGCTGATATTTCCCGGTAACAAGGTTATAGACTTAGTCTAATTTTGAGTGATGCGGGTATCGACTGCTTCTTTTAGGACGTGAACTTAATGGGGTAAACCCCTAAATGGTGTGCCTGTGGATTGGGTAGTCAAGCGAAAGGATTGGGTAGTCAAGCTTTCGCTGTTCAATATTTTTATTTGGCCGGTCGGCCGTGTATCTAATTATTATTTGTAATTCGATCTCTTTCATCTTACATGTAATTGCTATGTATATCTATGCTTGAGATAAAAGTGTGAATCTAGTGCACATCCTGGGAACTAGATTCACATGAGTATGAGTTAAGAATAAAAAAAAAAA]

[+] EMBL CF330263             [CCGCGCCATCTTCATCACCACGACCTCCTCTCCATTTACCCTCAAGAACCCCGGATAATGGTGCACCGGAGAGGGAGATCAAACCCCTTCTTCCTCGGCGCCCACCGCCGTTGCCATGGCCGACTCCGCCTTTACCGGTGAGCCATTGGTCGATTGCTTGCAGTAGTAGCAACCTGGGATGGTGTTTCACATGTTGCATGAAATGATTTTGGCATGCATGCTGTGGATCGAGCCATCGCCGTGACGCCAAGCTCTCCATCGCCTCCAAGCCGTCCCGCGAGCTGCTGCTGCCGTCCAAGCTTTGCTAGCATTGTCAGGCCCCTCGATGATTGCATAAACGGTGAAGAAGTGAATTAGGTGCTGATATTTCCCGGTAACAAGGTTATAGACTTAGTCTAATTTTGAGTGATGCGGGTATCGACTGCTTCTTTTAGGACGTGAACTTAATGGGGTAAACCCCTAAATGGTGTGCCTGTGGATTGGGTAGTCAAGCGAAAGGATTGGGTAGTCAAGCTTTCGCTGTTCAATATTTTTATTTGGCCGGTCGGCCGTGTATCTAATTATTATTTGTAATTCGATCTCTTTCATCTTACATGTAATTGCTATGTATA                                                                                     ]
[+] EMBL AA750257             [                          CCTCTCCATTTACCCTCAAGAACCCCGGATAATGGTGCACCGGAGAGGGAGATCAAACCCCTTCTTCCTCGGCGCCCACCGCCGTTGCCATGGCCGACTCCGCCTTTNCCGGTGAGCCATTGGTCGATTGCTTGCAGTAGTAGCAACCTGGGATGGTGTTTCACATGTTGCATGAAATGATTTTGGCATGCATGCTGTGGATCGAG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                ]
[-] EMBL CF330264             [                                                                                                                                             GCCATTGGTCGATTGCTTGCAGTAGTAGCAACCTGGGATGGTGTTTCACATGTTGCATGAAATGATTTTGGCATGCATGCTGTGGATCGAGCCATCGCCGTGACGCCAAGCTCTCCATCGCCTCCAAGCCGTCCCGCGAGCTGCTGCTGCCGTCCAAGCTTTGCTAGCATTGTCAGGCCCCTCGATGATTGCATAAACGGTGAAGAAGTGAATTAGGTGCTGATATTTCCCGGTAACAAGGTTATAGACTTAGTCTAATTTTGAGTGATGCGGGTATCGACTGCTTCTTTTAGGACGTGAACTTAATGGGGTAAACCCCTAAATGGTGTGCCTGTGGATTGGGTAGTCAAGCGAAAGGATTGGGTAGTCAAGCTTTCGCTGTTCAATATTTTTATTTGGCCGGTCGGCCGTGTATCTAATTATTATTTGTAATTCGATCTCTTTCATCTTACATGTATTTGCTATGTATATCTATGCTTGAGATAAAAGTGTGAATCTAGTGCACATCCTGGGAACTAGATTCACATGAGTATGAGTTAAGAATAAAAAAAAAAA]




>consensus_8276#0
CCGCGCCATCTTCATCACCACGACCTCCTCTCCATTTACCCTCAAGAACCCCGGATAATG
GTGCACCGGAGAGGGAGATCAAACCCCTTCTTCCTCGGCGCCCACCGCCGTTGCCATGGC
CGACTCCGCCTTTACCGGTGAGCCATTGGTCGATTGCTTGCAGTAGTAGCAACCTGGGAT
GGTGTTTCACATGTTGCATGAAATGATTTTGGCATGCATGCTGTGGATCGAGCCATCGCC
GTGACGCCAAGCTCTCCATCGCCTCCAAGCCGTCCCGCGAGCTGCTGCTGCCGTCCAAGC
TTTGCTAGCATTGTCAGGCCCCTCGATGATTGCATAAACGGTGAAGAAGTGAATTAGGTG
CTGATATTTCCCGGTAACAAGGTTATAGACTTAGTCTAATTTTGAGTGATGCGGGTATCG
ACTGCTTCTTTTAGGACGTGAACTTAATGGGGTAAACCCCTAAATGGTGTGCCTGTGGAT
TGGGTAGTCAAGCGAAAGGATTGGGTAGTCAAGCTTTCGCTGTTCAATATTTTTATTTGG
CCGGTCGGCCGTGTATCTAATTATTATTTGTAATTCGATCTCTTTCATCTTACATGTAAT
TGCTATGTATATCTATGCTTGAGATAAAAGTGTGAATCTAGTGCACATCCTGGGAACTAG
ATTCACATGAGTATGAGTTAAGAATAAAAAAAAAAA

consensusID : consensus_8276#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 496
fasta sequence

                              [TTACCGCTGTGGATCGAGCCATCGCCGTGACGCCAAGCTCTCCATCGCCTCCAAGCCGTCCCGCGAGCTGCTGCTGCCGTCCAAGCTTTGCTAGCATTGTCAGGCCCCTCGATGATTGCATAAACGGTGAAGAAGTGAATTAGGTGCTGATATTTCCCGGTAACAAGGTTATAGACTTAGTCTAATTTTGAGTGATGCGGGTATCGACTGCTTCTTTTAGGACGTGAACTTAATGGGGTAAACCCCTAATTTGTGTGCCTGTGGATTGGGTAGTCAAGCTTTCGCTGTTCAATATTTTTATTTGGCCGGTCGGCCGTGTATCTAATTATTATTTGTAATTCGATCTCTTTCATCTTACATGTATTTGCTATGTATATCTATGCTTGAGATAAAAGTGTGAATCTAGTGCACATCCTGGGAACTAGATTCACATGAGTATGAGTTAAGAATATTTGAGATGTGATATATCTTTAGCCATTTTTGTCAAAAAAAAAAA]

[-] EMBL CF314460             [TTACCGCTGTGGATCGAGCCATCGCCGTGACGCCAAGCTCTCCATCGCCTCCAAGCCGTCCCGCGAGCTGCTGCTGCCGTCCAAGCTTTGCTAGCATTGTCAGGCCCCTCGATGATTGCATAAACGGTGAAGAAGTGAATTAGGTGCTGATATTTCCCGGTAACAAGGTTATAGACTTAGTCTAATTTTGAGTGATGCGGGTATCGACTGCTTCTTTTAGGACGTGAACTTAATGGGGTAAACCCCTAATTTGTGTGCCTGTGGATTGGGTAGTCAAGCTTTCGCTGTTCAATATTTTTATTTGGCCGGTCGGCCGTGTATCTAATTATTATTTGTAATTCGATCTCTTTCATCTTACATGTATTTGCTATGTATATCTATGCTTGAGATAAAAGTGTGAATCTAGTGCACATCCTGGGAACTAGATTCACATGAGTATGAGTTAAGAATATTTGAGATGTGATATATCTTTAGCCATTTTTGTCAAAAAAAAAAA]
[+] EMBL AU078106             [       TGTGGATCGAGCCATCGCCGTGACGCCAAGCTCTCCATCGCCTCCAAGCCGTCCCGCGAGCTGCTGCTGCCGTCCAAGCTTTGCTAGCATTGTCAGGCCCCTCGATGATTGCATAAACGGTGAAGAAGTGAATTAGGTGCTGATATTTCCCGGTAACAAGGTTATAGACTTAGTCTAATTTTGAGTGATGCGGGTATCGACTGCTTCTTCTAGGACGTGAACTTAATGGGGTAAACNCCTAATTGGTGTGCCTGTGGATTGGGTAGTCAAGCTTTCGCTGTTCAATATTTTTATTTNGCCGGTCGGCCGTGTATCTAATTATTATTTGTAATTCGATCTCTTTCATCTTACATGTATTTGCTATGTATATCTATNCTTGAGATAAAAGTGTGAATCTAGTGCACATCCTGGGAACTAGATTCACATGAGTATGAGTTAAGA                                                ]




>consensus_8276#1
TTACCGCTGTGGATCGAGCCATCGCCGTGACGCCAAGCTCTCCATCGCCTCCAAGCCGTC
CCGCGAGCTGCTGCTGCCGTCCAAGCTTTGCTAGCATTGTCAGGCCCCTCGATGATTGCA
TAAACGGTGAAGAAGTGAATTAGGTGCTGATATTTCCCGGTAACAAGGTTATAGACTTAG
TCTAATTTTGAGTGATGCGGGTATCGACTGCTTCTTTTAGGACGTGAACTTAATGGGGTA
AACCCCTAATTTGTGTGCCTGTGGATTGGGTAGTCAAGCTTTCGCTGTTCAATATTTTTA
TTTGGCCGGTCGGCCGTGTATCTAATTATTATTTGTAATTCGATCTCTTTCATCTTACAT
GTATTTGCTATGTATATCTATGCTTGAGATAAAAGTGTGAATCTAGTGCACATCCTGGGA
ACTAGATTCACATGAGTATGAGTTAAGAATATTTGAGATGTGATATATCTTTAGCCATTT
TTGTCAAAAAAAAAAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_8276#0      CCGCGCCATCTTCATCACCACGACCTCCTCTCCATTTACCCTCAAGAACCCCGGATAATG 60
consensus_8276#1      ------------------------------------------------------------
                                                                                  

consensus_8276#0      GTGCACCGGAGAGGGAGATCAAACCCCTTCTTCCTCGGCGCCCACCGCCGTTGCCATGGC 120
consensus_8276#1      ------------------------------------------------------------
                                                                                  

consensus_8276#0      CGACTCCGCCTTTACCGGTGAGCCATTGGTCGATTGCTTGCAGTAGTAGCAACCTGGGAT 180
consensus_8276#1      ------------------------------------------------------------
                                                                                  

consensus_8276#0      GGTGTTTCACATGTTGCATGAAATGATTTTGGCATGCATGCTGTGGATCGAGCCATCGCC 240
consensus_8276#1      ----------------------------------TTACCGCTGTGGATCGAGCCATCGCC 26
                                                        *    *********************

consensus_8276#0      GTGACGCCAAGCTCTCCATCGCCTCCAAGCCGTCCCGCGAGCTGCTGCTGCCGTCCAAGC 300
consensus_8276#1      GTGACGCCAAGCTCTCCATCGCCTCCAAGCCGTCCCGCGAGCTGCTGCTGCCGTCCAAGC 86
                      ************************************************************

consensus_8276#0      TTTGCTAGCATTGTCAGGCCCCTCGATGATTGCATAAACGGTGAAGAAGTGAATTAGGTG 360
consensus_8276#1      TTTGCTAGCATTGTCAGGCCCCTCGATGATTGCATAAACGGTGAAGAAGTGAATTAGGTG 146
                      ************************************************************

consensus_8276#0      CTGATATTTCCCGGTAACAAGGTTATAGACTTAGTCTAATTTTGAGTGATGCGGGTATCG 420
consensus_8276#1      CTGATATTTCCCGGTAACAAGGTTATAGACTTAGTCTAATTTTGAGTGATGCGGGTATCG 206
                      ************************************************************

consensus_8276#0      ACTGCTTCTTTTAGGACGTGAACTTAATGGGGTAAACCCCTAAATGGTGTGCCTGTGGAT 480
consensus_8276#1      ACTGCTTCTTTTAGGACGTGAACTTAATGGGGTAAACCCCTAATTTGTGTGCCTGTGGA- 265
                      ******************************************* * ************* 

consensus_8276#0      TGGGTAGTCAAGCGAAAGGATTGGGTAGTCAAGCTTTCGCTGTTCAATATTTTTATTTGG 540
consensus_8276#1      --------------------TTGGGTAGTCAAGCTTTCGCTGTTCAATATTTTTATTTGG 305
                                          ****************************************

consensus_8276#0      CCGGTCGGCCGTGTATCTAATTATTATTTGTAATTCGATCTCTTTCATCTTACATGTAAT 600
consensus_8276#1      CCGGTCGGCCGTGTATCTAATTATTATTTGTAATTCGATCTCTTTCATCTTACATGTATT 365
                      ********************************************************** *

consensus_8276#0      TGCTATGTATATCTATGCTTGAGATAAAAGTGTGAATCTAGTGCACATCCTGGGAACTAG 660
consensus_8276#1      TGCTATGTATATCTATGCTTGAGATAAAAGTGTGAATCTAGTGCACATCCTGGGAACTAG 425
                      ************************************************************

consensus_8276#0      ATTCACATGAGTATGAGTTAAGAATAAAAAAAAAAA------------------------ 696
consensus_8276#1      ATTCACATGAGTATGAGTTAAGAATATTTGAGATGTGATATATCTTTAGCCATTTTTGTC 485
                      **************************    * *                           

consensus_8276#0      -----------
consensus_8276#1      AAAAAAAAAAA 496