cluster # 8281

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Oryza sativa
cluster # 8281 cluster # 8281 Sequences # 5 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_8281#0 length = 579 sequences # 3

consensus_8281#1 length = 435 sequences # 1
consensus_8281#2 length = 249 sequences # 1

consensusID : consensus_8281#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 579
fasta sequence

                              [ATCTCTCTCTTCGCCGCCCTCCCCTCAGCGCCCCCGAGCGGAGGCGGCGACGGCGCCCCTCCTCCCGCGAGCGGCAGGCAGGCAGGCAGGCGGAGCCCTCCCCCACCACCGACGGCAGGTGGCAGGCGACGGCTCTAGCGGGAGGGGCCCCCATCACCGGCGACGGATCTAGCGGGAGGAGAGGCGCCCCGCGAGCGGCGGCGGCGGAGCCCTCCCCCACCACCAGCGGCGGATCTAGCAGAAGGGGAGGCGGCGGCGGCGCTCTCCCCTCCGCCAGCGCCCTCCGCCGGCGGCGGCGGCGGCGGATCTAGCGGGAGGTGAGGCGGCGGCGGCCTG-TCGGCGTCCCAGTGGCGGN-GGCAC---TCTCCCCTCCACCAGATCCAGCAGGAGGGGAGCCGCCGGCGGCCAGCCATCCCTGCGGCGGCGACGGCGGTGGTTCGGCGACGACGGCGGTGGCGGCGACCCCCTTCGATCTAATTTTTTGTTTTTATTTGGATATATATGTGTACTATGCATCATGCTTTCTTCGATTTTGTTGTGTGATTGAACTCCGATTGGGATTTTTTTGGGGTTTACTAAAAA]

[+] EMBL AU172915             [ATCTCTCTCTTCGCCGCCCTCCCCTCAGCGCCCCCGAGCGGAGGCGGCGACGGCGCCCCTCCTCCCGCGAGCGGCAGGCAGGCAGGCAGGCGGAGCCCTCCCCCACCACCGACGGCAGGTGGCAGGCGACGGCTCTAGCGGGAGGGGCCCCCATCACCGGCGACGGATCTAGCGGGAGGAGAGGCGCCCCGCGAGCGGCGGCGGCGGAGCCCTCCCCCACCACCAGCGGCGGATCTAGCAGAAGGGGAGGCGGCGGCGGCGCTCTCCCCTCCGCCAGCGCCCTCCGCCGGCGGCGGCGGCGGCGGATCTAGCGGGAGGTGAGGCGGCGGCGGCCTGTTCGGCGTCCCAGTGGCGGN GGCAC   TCTCCCCTTCACCAGATCCAGCAGGAGGGGAGCCGNCGGCGGCCAGCCATCCCTGCGG                                                                                                                                                                 ]
[+] EMBL AU182512             [                                                                                                                                                                                                                          ACCACCAGCGGCGGATCTAGCAGAAGGGGAGGCGGCGGCGGCGCTCTCCCCTCCGCCAGCGCCCTCCGCCGGCGGCGGCGGCGGCGGATCTAGCGGGAGGTGAGGCGGCGGCGGCCTG TCGGCGTCCCAGTGGCGGC GGCAC   TCTCCCCTCCACCAGATCCAGCAGGAGGGGAGCCGCCGGCGGCCAGCCATCCCTGCGGCGGCGACGGCGGTGGTTCGGCGACGACGGCGGTGGCGGCGACCCCCTTCGATCTAATTTTTTGTTTTTATTTGGATATATATGTGTACTATGCATCATGCTTTCTTCGATTTTGTTGTGTGATTGAACTCCGATTGGGATTTTTTTGGGGTTTACTAAAAA]
[+] EMBL AU172916             [                                                                                                                                                                                                                                                                                      GCCCTCCGCCGGCGGCGGCGGCGGCGGATCTAGCGGGAGGTGAGGCGGCGGCGGCCTG TCGGCGTCCCAGTGGCGGNGGGCACTTNTCCCCCCTCCA CAGATCCAGCAGGAGGGGAGCCGCCGGCGGCCAGCCATCCCTGCGGCGGCGACGGCGGTGGTTCGGCGACGACGGCGGTGGCGGCGACCCCCTTCGATCTAATTTTTTGTTTTTATTTGGATATATATGTGTAC ATGCATCATGCTTTCTTCGATTTTGTTGTGTGATTGAACTCCGATTGGGATTTTTTTGGGGTTTACTAAAAA]




>consensus_8281#0
ATCTCTCTCTTCGCCGCCCTCCCCTCAGCGCCCCCGAGCGGAGGCGGCGACGGCGCCCCT
CCTCCCGCGAGCGGCAGGCAGGCAGGCAGGCGGAGCCCTCCCCCACCACCGACGGCAGGT
GGCAGGCGACGGCTCTAGCGGGAGGGGCCCCCATCACCGGCGACGGATCTAGCGGGAGGA
GAGGCGCCCCGCGAGCGGCGGCGGCGGAGCCCTCCCCCACCACCAGCGGCGGATCTAGCA
GAAGGGGAGGCGGCGGCGGCGCTCTCCCCTCCGCCAGCGCCCTCCGCCGGCGGCGGCGGC
GGCGGATCTAGCGGGAGGTGAGGCGGCGGCGGCCTGTCGGCGTCCCAGTGGCGGNGGCAC
TCTCCCCTCCACCAGATCCAGCAGGAGGGGAGCCGCCGGCGGCCAGCCATCCCTGCGGCG
GCGACGGCGGTGGTTCGGCGACGACGGCGGTGGCGGCGACCCCCTTCGATCTAATTTTTT
GTTTTTATTTGGATATATATGTGTACTATGCATCATGCTTTCTTCGATTTTGTTGTGTGA
TTGAACTCCGATTGGGATTTTTTTGGGGTTTACTAAAAA

consensusID : consensus_8281#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 435
fasta sequence

                              [CCCTACCACCGACGGCGGCGTCGGCGGCGCCGGCGGAGGATCTANCGGGAGGGGAGGCGGCGGCGGCGGCGCTCTCCCCTCCGCCAGCGCCCTCCATCGCCGCCGCCGGCGGATCTAGCGGGAGTCCNCCGGATCCAGCAGGAGAGGAGCCGCCGGCTGCCAGCCGTCCCTGCGGCGGCGACGGCGACGGCGGTGCTTCGGAGATGATGGGGCGGCGGCGACTTCCTTCGATCTAATTTTTGGTTTTTATTTGGATATATATGTGATGCTTTCTTCGATTTTATTTGTGTGATTGAACTCCGATTGGGATTTTTTTCGGGGGTTTGAAAAAAAAAATATTAAAAAAGAGAGAAGAAAATAGATAAAAAGGAAGAGAAGAAGAAAAGGAAAATAGAAAATAAGAAAAGAAAAAGAGAGAGAAAAGAAGAATAAAAA]

[+] EMBL AU166421             [CCCTACCACCGACGGCGGCGTCGGCGGCGCCGGCGGAGGATCTANCGGGAGGGGAGGCGGCGGCGGCGGCGCTCTCCCCTCCGCCAGCGCCCTCCATCGCCGCCGCCGGCGGATCTAGCGGGAGTCCNCCGGATCCAGCAGGAGAGGAGCCGCCGGCTGCCAGCCGTCCCTGCGGCGGCGACGGCGACGGCGGTGCTTCGGAGATGATGGGGCGGCGGCGACTTCCTTCGATCTAATTTTTGGTTTTTATTTGGATATATATGTGATGCTTTCTTCGATTTTATTTGTGTGATTGAACTCCGATTGGGATTTTTTTCGGGGGTTTGAAAAAAAAAATATTAAAAAAGAGAGAAGAAAATAGATAAAAAGGAAGAGAAGAAGAAAAGGAAAATAGAAAATAAGAAAAGAAAAAGAGAGAGAAAAGAAGAATAAAAA]




>consensus_8281#1
CCCTACCACCGACGGCGGCGTCGGCGGCGCCGGCGGAGGATCTANCGGGAGGGGAGGCGG
CGGCGGCGGCGCTCTCCCCTCCGCCAGCGCCCTCCATCGCCGCCGCCGGCGGATCTAGCG
GGAGTCCNCCGGATCCAGCAGGAGAGGAGCCGCCGGCTGCCAGCCGTCCCTGCGGCGGCG
ACGGCGACGGCGGTGCTTCGGAGATGATGGGGCGGCGGCGACTTCCTTCGATCTAATTTT
TGGTTTTTATTTGGATATATATGTGATGCTTTCTTCGATTTTATTTGTGTGATTGAACTC
CGATTGGGATTTTTTTCGGGGGTTTGAAAAAAAAAATATTAAAAAAGAGAGAAGAAAATA
GATAAAAAGGAAGAGAAGAAGAAAAGGAAAATAGAAAATAAGAAAAGAAAAAGAGAGAGA
AAAGAAGAATAAAAA

consensusID : consensus_8281#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 249
fasta sequence

                              [ATCTTTNTCTTCGCCGCCCTCCCCTCANCGCCCCCAAGCGGCGGCGGCGACGGCGCCCCTCCTCCCGCAAGCGGCGGCGGCGGCGGCGGACCTCCCCCACCACCGACGGCGGTGGCGGCNACGGCTCTAGCGGGAGGGGCCCCCATNACCGGCNACGGATCTAGCGGGAGGAGAGGCGCCCCGAAGCGGCGGCGGCGGACCTCCCCCACCACCAGCGGCGGATCTAGCAGAAGGNGAGGCNGCGGCGGC]

[+] EMBL AU101231             [ATCTTTNTCTTCGCCGCCCTCCCCTCANCGCCCCCAAGCGGCGGCGGCGACGGCGCCCCTCCTCCCGCAAGCGGCGGCGGCGGCGGCGGACCTCCCCCACCACCGACGGCGGTGGCGGCNACGGCTCTAGCGGGAGGGGCCCCCATNACCGGCNACGGATCTAGCGGGAGGAGAGGCGCCCCGAAGCGGCGGCGGCGGACCTCCCCCACCACCAGCGGCGGATCTAGCAGAAGGNGAGGCNGCGGCGGC]




>consensus_8281#2
ATCTTTNTCTTCGCCGCCCTCCCCTCANCGCCCCCAAGCGGCGGCGGCGACGGCGCCCCT
CCTCCCGCAAGCGGCGGCGGCGGCGGCGGACCTCCCCCACCACCGACGGCGGTGGCGGCN
ACGGCTCTAGCGGGAGGGGCCCCCATNACCGGCNACGGATCTAGCGGGAGGAGAGGCGCC
CCGAAGCGGCGGCGGCGGACCTCCCCCACCACCAGCGGCGGATCTAGCAGAAGGNGAGGC
NGCGGCGGC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_8281#0      ATCTCTCTCTTCGCCGCCCTCCCCTCAGCGCCCCCGAGCGGAGGCGGCGACGGCGCCCCT 60
consensus_8281#2      ATCTTTNTCTTCGCCGCCCTCCCCTCANCGCCCCCAAGCGGCGGCGGCGACGGCGCCCCT 60
consensus_8281#1      ----------------CCCTACCACCGACGGC----GGCGTCGGCGGCGCCGGCGGAGGA 40
                                      **** **  *  ** *     ***  ******* *****     

consensus_8281#0      CCTCCCGCGAGCGGCAGGCAGGCAGGCAGGCGGAGCCCTCCCC--CACCACCGACGGCAG 118
consensus_8281#2      CCTCCCGCAAGCGGCGGC--GGCGG--CGGCGGA--CCTCCCC--CACCACCGACGGC-G 111
consensus_8281#1      TCTANCGGGAGGGGAGGC--GGCGG--CGGCGGCGCTCTCCCCTCCGCCAGCGCCCTCCA 96
                       **  **  ** **  *   *** *   *****    ******  * *** ** *  *  

consensus_8281#0      GTG--GCAGGCGACGGCTCTAGCGGGAGGGGCCCCCATCACCGGCGACGGATCTAGCGGG 176
consensus_8281#2      GTG--GC-GGCNACGGCTCTAGCGGGAGGGGCCCCCATNACCGGCNACGGATCTAGCGGG 168
consensus_8281#1      TCGCCGCCGCCGGCGGATCTAGCGGGAG---TCCNC-----------CGGATCCAGCAGG 142
                        *  ** * *  *** ***********    ** *           ****** *** **

consensus_8281#0      AGGAGAGGCGCC--CCGCGAGCGGCGGCGGCGGAGCCCTCCCCCACCACCAGCGGCGGAT 234
consensus_8281#2      AGGAGAGGCGCC--CCG-AAGCGGCGGCGGCGGA--CCTCCCCCACCACCAGCGGCGGAT 223
consensus_8281#1      AGAGGAGCCGCCGGCTGCCAGCCGTCCCTGCGG----CGGCGACGGCGACGGCGGTG--C 196
                      **  *** ****  * *  *** *   * ****    *  *  *  *  * **** *   

consensus_8281#0      CTAGCAGAAGGGGAGGCGGCGGCGGCGCTCTCCCCTCCGCCAGCGCCCTCCGCCGGCGGC 294
consensus_8281#2      CTAGCAGAAGGNGAGGCNGCGGCGGC---------------------------------- 249
consensus_8281#1      TTCGGAGATGATGGGGCGGCGGCGACTTCCTTCGATCTAATTTTTGGTTTTTATTTGGAT 256
                       * * *** *  * *** ****** *                                  

consensus_8281#0      GGCGGCGGCGGATCTAGCGGGAGGTGAGGCGGCGGCGGCCTGTCGGCGTCCCAGTGGCGG 354
consensus_8281#2      ------------------------------------------------------------
consensus_8281#1      ATATATGTGATGCTTTCTTCGATTTTATTTGTGTGATTGAACTCCGATTGGGATTTTTTT 316
                                                                                  

consensus_8281#0      NGGCACTCTCCCCTCCACCAGATCCAGCAGGAGGGGAGCCGCCGGCGGCCAGCCATCCCT 414
consensus_8281#2      ------------------------------------------------------------
consensus_8281#1      CGGGGGTTTGAAAAAAAAAATATTAAAAAAGAGAGAAGAAAATAGATAAAAAGGAAGAGA 376
                                                                                  

consensus_8281#0      GCGGCGGCGACGGCGGTGGTTCGGCGACGACGGCGGTGGCGGCGACCCCCTTCGATCTAA 474
consensus_8281#2      ------------------------------------------------------------
consensus_8281#1      AGAAGAAAAGGAAAATAGAAAATAAGAAAAGAAAAAGAGAGAGAAAAGAAGAATAAAAA- 435
                                                                                  

consensus_8281#0      TTTTTTGTTTTTATTTGGATATATATGTGTACTATGCATCATGCTTTCTTCGATTTTGTT 534
consensus_8281#2      ------------------------------------------------------------
consensus_8281#1      ------------------------------------------------------------
                                                                                  

consensus_8281#0      GTGTGATTGAACTCCGATTGGGATTTTTTTGGGGTTTACTAAAAA 579
consensus_8281#2      ---------------------------------------------
consensus_8281#1      ---------------------------------------------