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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8287#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1105 fasta sequence
[AAAAAAAAAAAAAACCTTACAACCGCGACGGCCGCCGACGCAGGCAGACGGCCGCCATGGCCATGCTACTCCGGCGACCCCTCCGGGCCCTCACCCTCCCGCTCCTCCGCCCCCACCTCTCCACCGCCGCCGCGGCGGAGGTGTCCCCCGCGGATCACCACCCGGACCTCCTGTCGCCGCCGTTCGGCTACCTCCCGGGCCACCCGCGGCCGGACGCGAAGCACGACGAGCTGATCCTCGCCGTGCCGCGGGCCTCCCCGGGACGCCACGTGGCGGCCAAGGAGCGGAAGGCCGGGCGGGTGCCGGCCATCGTGTTCGAGCAGGAGAACGGCCAGGAGGGGGGCAACAAGCGCCTCGTCTCCGTCCAGTCGAAGCAGATCCGCAAGCTCGTCGACCACCTCGGCCGGTCCTTCTTCCTCTCCCGCCTCTTCCGCCTCCAGGTCTGGTCCGAGCACGCCGGGCAGGGGGTGCTCATCGAGAGCGTCCGCGTCCTGCCGCGTAAGGTACACTTACATGCAGGCACTGATGAGCCTCTGAATGTGACATTCATGAGAGCCCCTTCGTCGGCACTGCTCAAAATTGATGTTCCTTTGATGTTCATTGGGGACGATGCGTCACCTGGTCTTAGGAAAGGAGCCTACTTCAATACCATAAAACGAACTGTGAAGTATCTCTGCCCTGCTGACATAGTGCCACCCTACATTGAGGTGGATTTAAGCGAGTTGGACGTGGGCCAAAAACTGTTGATGCGTGATCTAAAAGTCCATCCAGCTCTGAAGTTACTTCAGTCACCAGAACAACCCATCTGTAGTATTATAGGGTCAAGAGCACCTGAACAGAAGAAGTCAAAATAACTTTGTTCGATGTATTAACTGTTTTCACATAATAAGATCCTCGTTTTACATTCATGCTTGGGTTATTTGAGTCTTTATTGTCCTCCAAGAGTGAATACTAGGATGATTTGTAGCCTAGAGACCACTATTTTGCCTGAGGAATGAATTGGAAGCCAGATGCTGCANNTTCAGNGTAACTGTTTGATTGTTTGCCCGCTTGCAATCNAGAGTGTTGGTGGACTNCTGTGCACAAAAAANCAGNAGACCAAAAA]
[+] EMBL AK072793 [AAAAAAAAAAAAAACCTTACAACCGCGACGGCCGCCGACGCAGGCAGACGGCCGCCATGGCCATGCTACTCCGGCGACCCCTCCGGGCCCTCACCCTCCCGCTCCTCCGCCCCCACCTCTCCACCGCCGCCGCGGCGGAGGTGTCCCCCGCGGATCACCACCCGGACCTCCTGTCGCCGCCGTTCGGCTACCTCCCGGGCCACCCGCGGCCGGACGCGAAGCACGACGAGCTGATCCTCGCCGTGCCGCGGGCCTCCCCGGGACGCCACGTGGCGGCCAAGGAGCGGAAGGCCGGGCGGGTGCCGGCCATCGTGTTCGAGCAGGAGAACGGCCAGGAGGGGGGCAACAAGCGCCTCGTCTCCGTCCAGTCGAAGCAGATCCGCAAGCTCGTCGACCACCTCGGCCGGTCCTTCTTCCTCTCCCGCCTCTTCCGCCTCCAGGTCTGGTCCGAGCACGCCGGGCAGGGGGTGCTCATCGAGAGCGTCCGCGTCCTGCCGCGTAAGGTACACTTACATGCAGGCACTGATGAGCCTCTGAATGTGACATTCATGAGAGCCCCTTCGTCGGCACTGCTCAAAATTGATGTTCCTTTGATGTTCATTGGGGACGATGCGTCACCTGGTCTTAGGAAAGGAGCCTACTTCAATACCATAAAACGAACTGTGAAGTATCTCTGCCCTGCTGACATAGTGCCACCCTACATTGAGGTGGATTTAAGCGAGTTGGACGTGGGCCAAAAACTGTTGATGCGTGATCTAAAAGTCCATCCAGCTCTGAAGTTACTTCAGTCACCAGAACAACCCATCTGTAGTATTATAGGGTCAAGAGCACCTGAACAGAAGAAGTCAAAATAACTTTGTTCGATGTATTAACTGTTTTCACATAATAAGATCCTCGTTTTACATTCATGCTTGGGTTATTTGAGTCTTTATTGTCCTCCAAGAGTGAATACTAGGATGATTTGTAGCCTAGAGACCACTATTTTGCCTGAGGAATGAATTGGAAGC ]
[+] EMBL AU184503 [ GCCGCNGACGCAGGNAGACGGCCGCCATGGNCATGCTANTCNGGNGACCNCTCCGGGCCCTAACCCTCNCGTTCCTCCGCCCCCACCTCTCCACCGNCGCNGGGGCGGAGGTGTCCCCCGCGGATCACCACCCGGACCTCCTGTCGCCGCCGTTCGGCTACCTCCCGGGCCACCCGCGGCCGGACGCGAAGCACGACGAGCTGATCCTCGCCGTGCCGAGGGCCTCCCCGGGACGCCACGTGGCGGCCAAGGAGCGGAAGGCCGGGCGGGTGCCGGCCATCGTGTTCGAGCAGGAGAACGGCCAGGAGGGGGGCAACAAGCGCCTCGTCTCCGTCCAGTCGAAGCAGATCCG AAGCTCGTCGACCACCTCGGCCGGTC ]
[+] EMBL AU184504 [ nAAGTCAAAATAACTTTGTTCNATGTATTANCTGTTTTCACATAATAAGATCCTCGTTTTACATTCATGCNTGGGTTATTTGAGTCTTTNTTGTCCTCCAAGAGTGAATNCTAGGATGATTTGTAGCCTAGAGACCACTATTTTGCCTNAGNAATGAATTGGAAGCCAGATGCTGCANNTTCAGNGTAACTGTTTGATTGTTTGCCCGCTTGCAATCNAGAGTGTTGGTGGACTNCTGTGCACAAAAAANCAGNAGACCAAAAA]
consensusID : consensus_8287#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 724 fasta sequence
[CCCCTACTCCCCACACGCCGCCGGCCGCCATGGCCATGCTGCTCCGGCGACCCCTCCACACCCTTCCCATCCTCCCCCTCCTCGGCCGCCACCTCTCCTCCTCCTCCGCCGCCGCGGAGGCGGTCACCGCGGACCACCACCACCACCACGACGCGGACCTCCTGTCGCCGCCGTTCGACTACCTCCCGGGCCACCCGCGGCCGGACGCGAAGCACGACGAGCTCATCCTCGCCGTGCCGCGCGCCTCCTCGGGGCGGCACGTGGCGGCCAAGGAGCGGAAGGCCGGGCGGGTGCCGGCCATCGTGTTCGAGCAGGAGAACGGGCAGGAGGGCGGCAACAAGCGGCTGGTGTCCGTGCAGTCCAAGCAGATCCGCAAGCTCGTCGACCACCTCGGCCGCTCCTTCTTCCTCTCCCGCCTCTTCCGCCTCCAGGTCTGGTCCGAGCACGCCGGCCAGGGGGAGCTCATCGAGAGCGTCCGCGTCCTTCCCCGCAAGGTACACTTACATGCAGGAACTGATGAGCCTCTGAATGTGACATTCATGAGAGCCCCTTCTTCAGCCCTACTCAAGATAGATGTTCCTTTGATGTTCATCGGAGAGGATGCATCGCCTGGTCTCAGGAAAGGGGCTTACTTCAACACCATAAAACGAACTGTCAAGTATCTGTGCCCTGCTGACATAGATGCCACCATACATNGAGGTGGATNTAAGTGAGTTGGATGTCG]
[+] EMBL CB655428 [CCCCTACTCCCCACACGCCGCCGGCCGCCATGGCCATGCTGCTCCGGCGACCCCTCCACACCCTTCCCATCCTCCCCCTCCTCGGCCGCCACCTCTCCTCCTCCTCCGCCGCCGCGGAGGCGGTCACCGCGGACCACCACCACCACCACGACGCGGACCTCCTGTCGCCGCCGTTCGACTACCTCCCGGGCCACCCGCGGCCGGACGCGAAGCACGACGAGCTCATCCTCGCCGTGCCGCGCGCCTCCTCGGGGCGGCACGTGGCGGCCAAGGAGCGGAAGGCCGGGCGGGTGCCGGCCATCGTGTTCGAGCAGGAGAACGGGCAGGAGGGCGGCAACAAGCGGCTGGTGTCCGTGCAGTCCAAGCAGATCCGCAAGCTCGTCGACCACCTCGGCCGCTCCTTCTTCCTCTCCCGCCTCTTCCGCCTCCAGGTCTGGTCCGAGCACGCCGGCCAGGGGGAGCTCATCGAGAGCGTCCGCGTCCTTCCCCGCAAGGTACACTTACATGCAGGAACTGATGAGCCTCTGAATGTGACATTCATGAGAGCCCCTTCTTCAGCCCTACTCAAGATAGATGTTCCTTTGATGTTCATCGGAGAGGATGCATCGCCTGGTCTCAGGAAAGGGGCTTACTTCAACACCATAAAACGAACTGTCAAGTATCTGTG ]
[+] EMBL CA753423 [ CAAGCAGATCCGCAAGCTCGTCGACCACCTCGGCCGCTCCTTCTTCCTCTCCCGCCTCTTCCGCCTCCAGGTCTGGTCCGAGCACGCCGGCCAGGGGGAGCTCATCGAGAGCGTCCGCGTCCTTCCCCGCAAGGTACACTTACATGCAGGAACTGATGAGCCTCTGAATGTGACATTCATGAGAGCCCCTTTTTCAGCCCTACTCAAGATAGATGTTCCTTTGATGTTCATCGGAGAGGATGCATCGCCTGGTCTCAGGAAAGGGGCTTACTTCAACACCATAAAACGAACTGTCCAGTATGAGTGCCCTGCTGACATAGATGCCACCATACATNGAGGTGGATNTAAGTGAGTTGGATGTCG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_8287#0 AAAAAAAAAAAAAACCTTACAACCGCGACGGCCGCCGACGCAGGCAGACGGCCGCCATGG 60
consensus_8287#1 -------------------------CCCCTACTCCC--CACACGCCGCCGGCCGCCATGG 33
* * * ** * ** ** * ************
consensus_8287#0 CCATGCTACTCCGGCGACCCCTCCGGGCCCT---CACCCTCCCGCTCCTCCGCCCCCACC 117
consensus_8287#1 CCATGCTGCTCCGGCGACCCCTCCACACCCTTCCCATCCTCCCCCTCCTCGGCCGCCACC 93
******* **************** **** ** ****** ****** *** *****
consensus_8287#0 TCTCCACCGCC---GCCGCGGCGGAGGTGTCCCCCGCGGATCACCACC------------ 162
consensus_8287#1 TCTCCTCCTCCTCCGCCGCCGCGGAGGCGGTCACCGCGGACCACCACCACCACCACGACG 153
***** ** ** ***** ******* * * ******* *******
consensus_8287#0 CGGACCTCCTGTCGCCGCCGTTCGGCTACCTCCCGGGCCACCCGCGGCCGGACGCGAAGC 222
consensus_8287#1 CGGACCTCCTGTCGCCGCCGTTCGACTACCTCCCGGGCCACCCGCGGCCGGACGCGAAGC 213
************************ ***********************************
consensus_8287#0 ACGACGAGCTGATCCTCGCCGTGCCGCGGGCCTCCCCGGGACGCCACGTGGCGGCCAAGG 282
consensus_8287#1 ACGACGAGCTCATCCTCGCCGTGCCGCGCGCCTCCTCGGGGCGGCACGTGGCGGCCAAGG 273
********** ***************** ****** **** ** ****************
consensus_8287#0 AGCGGAAGGCCGGGCGGGTGCCGGCCATCGTGTTCGAGCAGGAGAACGGCCAGGAGGGGG 342
consensus_8287#1 AGCGGAAGGCCGGGCGGGTGCCGGCCATCGTGTTCGAGCAGGAGAACGGGCAGGAGGGCG 333
************************************************* ******** *
consensus_8287#0 GCAACAAGCGCCTCGTCTCCGTCCAGTCGAAGCAGATCCGCAAGCTCGTCGACCACCTCG 402
consensus_8287#1 GCAACAAGCGGCTGGTGTCCGTGCAGTCCAAGCAGATCCGCAAGCTCGTCGACCACCTCG 393
********** ** ** ***** ***** *******************************
consensus_8287#0 GCCGGTCCTTCTTCCTCTCCCGCCTCTTCCGCCTCCAGGTCTGGTCCGAGCACGCCGGGC 462
consensus_8287#1 GCCGCTCCTTCTTCCTCTCCCGCCTCTTCCGCCTCCAGGTCTGGTCCGAGCACGCCGGCC 453
**** ***************************************************** *
consensus_8287#0 AGGGGGTGCTCATCGAGAGCGTCCGCGTCCTGCCGCGTAAGGTACACTTACATGCAGGCA 522
consensus_8287#1 AGGGGGAGCTCATCGAGAGCGTCCGCGTCCTTCCCCGCAAGGTACACTTACATGCAGGAA 513
****** ************************ ** ** ******************** *
consensus_8287#0 CTGATGAGCCTCTGAATGTGACATTCATGAGAGCCCCTTCGTCGGCACTGCTCAAAATTG 582
consensus_8287#1 CTGATGAGCCTCTGAATGTGACATTCATGAGAGCCCCTTCTTCAGCCCTACTCAAGATAG 573
**************************************** ** ** ** ***** ** *
consensus_8287#0 ATGTTCCTTTGATGTTCATTGGGGACGATGCGTCACCTGGTCTTAGGAAAGGAGCCTACT 642
consensus_8287#1 ATGTTCCTTTGATGTTCATCGGAGAGGATGCATCGCCTGGTCTCAGGAAAGGGGCTTACT 633
******************* ** ** ***** ** ******** ******** ** ****
consensus_8287#0 TCAATACCATAAAACGAACTGTGAAGTATCTCTGCCCTGCTGACATAG-TGCCACCCTAC 701
consensus_8287#1 TCAACACCATAAAACGAACTGTCAAGTATCTGTGCCCTGCTGACATAGATGCCACCATAC 693
**** ***************** ******** **************** ******* ***
consensus_8287#0 ATTGAGGTGGATTTAAGCGAGTTGGACGTGGGCCAAAAACTGTTGATGCGTGATCTAAAA 761
consensus_8287#1 ATNGAGGTGGATNTAAGTGAGTTGGATGTCG----------------------------- 724
** ********* **** ******** ** *
consensus_8287#0 GTCCATCCAGCTCTGAAGTTACTTCAGTCACCAGAACAACCCATCTGTAGTATTATAGGG 821
consensus_8287#1 ------------------------------------------------------------
consensus_8287#0 TCAAGAGCACCTGAACAGAAGAAGTCAAAATAACTTTGTTCGATGTATTAACTGTTTTCA 881
consensus_8287#1 ------------------------------------------------------------
consensus_8287#0 CATAATAAGATCCTCGTTTTACATTCATGCTTGGGTTATTTGAGTCTTTATTGTCCTCCA 941
consensus_8287#1 ------------------------------------------------------------
consensus_8287#0 AGAGTGAATACTAGGATGATTTGTAGCCTAGAGACCACTATTTTGCCTGAGGAATGAATT 1001
consensus_8287#1 ------------------------------------------------------------
consensus_8287#0 GGAAGCCAGATGCTGCANNTTCAGNGTAACTGTTTGATTGTTTGCCCGCTTGCAATCNAG 1061
consensus_8287#1 ------------------------------------------------------------
consensus_8287#0 AGTGTTGGTGGACTNCTGTGCACAAAAAANCAGNAGACCAAAAA 1105
consensus_8287#1 --------------------------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||