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Oryza sativa
cluster # 8290 cluster # 8290       Sequences # 5       consensus # 3


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_8290#0 length = 1741 sequences # 1  
consensus_8290#1 length = 749 sequences # 2  
consensus_8290#2 length = 723 sequences # 2  

consensusID : consensus_8290#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 1741
fasta sequence
                              [CCCTGTAAGGCTGTAAGGTGTAAGTGTGTTCAGCGAGATGCGAGCTTCTTCTTGACCTCGACGTAGATCCATGGCCGGCACCGGAGGCAGCCCTCTGCTCCGCTCTCCCTCTCCGGTGATGAACACCATGCCGACGCCGCCCTCCGCCGCGGTGTTCGACGTCGAGGCCGCGTCCGGCGCTCGCCGCCTTGGCATCAAGCCCGCCGCCGACGCCGGCGCCGCCTTCGTGCTCGAGTCCAAAGGGAAGTGGTGGCACGCCGGGTTCCACCTGACGACGGCGATCGTGGGGCCGACGGTGCTGACGCTCCCGTACGCGCTGCGGGGGATGGGGTGGGCGCTCGGCCTGGTGGCGCTCACCGCCGTCGCCGCCGTCACCTTCTACGCCTACTACCTCATGTCCAGGGTCCTCGACCACTGCGAGGCCCACGGCCGCCGCCACATCCGCTTCCGCGAGCTCGCCGCCGACGTCCTCGGATCTGGATGGGTGTTCTACTTGGTGGTCACCGTGCAAACTGCCATCAACGCCGGTATTACCATCGGGAGCATCCTTCTTGCGGCTGACTGCTTACAAATAATGTACTCGGACCTTGCACCAAATGGACCCCTGAAACTGTACCATTTCATCATCGTCGTCGCTGTGGTTCTGTCCTTGCTCTCCCAGCTGCCGTCGTTCCACTCCCTGCGTTACATCAACCTCGGCTCGCTCCTCCTCAGCTTCGGCTACACCATCCTTGTCTCAGCTGCCTGCATCCGAGCAGGTGCTTTGAGCGATGTCCCGGAGAAGGATTACTCCCTGAGCTCATCCAATTCGGAGAAGACCTTCAATGCGTTCCTCTCCATTTCCATCCTCGCCTCCGTCTTCGGCAATGGCATTCTGCCTGAAATCCAGGCGACGCTGGCGCCGCCGGCGGCCGGGAAGATGATGAAGGCGCTGGTGCTGTGCTACACGGTGGTGTTGTTCACCTTCTACTTGCCGGCGATCACCGGCTACTGGGCGTTCGGCAGCCAGGTGCAGTCCAACGTCCTGCAGAGCCTCATGCCGGACAAGGGCCCTTCCCTGGCGCCGACGTGGCTGCTCGGCCTCGCCGTCGTGCTCGTCCTCCTCCAGCTGCTCGCCATCGCGCTCGTCTACTCCCAGGTGGCGTACGAGATCATGGAGAAGAGCTCGGCCGACGCGGCGCGCGGCCGGTTCTCGCGGCGGAACGTGGCGCCCCGGGTGGCGCTCCGGACGGCGTACGTCGCGGCGTGCGCGTTCGTGGCCGCGATGCTGCCCTTCTTCGGCGACATCGTCGGCGTCGTCGGCGCCGTCGGCTTCATCCCGCTCGACTTCGTGCTCCCCGTCGTCATGTACAACATGGCGCTCGCACCGCCGAGGCGGTCGCCGGTGTACCTCGCCAACGTCGCCATCATGGTCGTCTTCACCGGCGTCGGCCTCATCGGCGCCGTCGCCTCCGTACGGAAGCTCGTGCTCGACGCCGGCCAGTTCAAGCTCTTCAGCGGCAACGTCGTGGACTGAAATGGACCTAACGAATAGCGATAGTGCTTGGTTTTTGGCGCCTTTTTGACTATTGACATTTGTATTCATTAGGTTTCACAAAAAAAAAACATTGTAAAAGAGAAAGAGGAAAAATCATCGATTCATGAAGAAAAAGAAAAGGCCAAAAAACGTAAAGACGCGTGTGCTGAAGAAAGTTCACTAAGGTGTTGTGTTGTAAATTTCATGAACACTGGTGAAAATTCC]

[+] EMBL AK106883             [CCCTGTAAGGCTGTAAGGTGTAAGTGTGTTCAGCGAGATGCGAGCTTCTTCTTGACCTCGACGTAGATCCATGGCCGGCACCGGAGGCAGCCCTCTGCTCCGCTCTCCCTCTCCGGTGATGAACACCATGCCGACGCCGCCCTCCGCCGCGGTGTTCGACGTCGAGGCCGCGTCCGGCGCTCGCCGCCTTGGCATCAAGCCCGCCGCCGACGCCGGCGCCGCCTTCGTGCTCGAGTCCAAAGGGAAGTGGTGGCACGCCGGGTTCCACCTGACGACGGCGATCGTGGGGCCGACGGTGCTGACGCTCCCGTACGCGCTGCGGGGGATGGGGTGGGCGCTCGGCCTGGTGGCGCTCACCGCCGTCGCCGCCGTCACCTTCTACGCCTACTACCTCATGTCCAGGGTCCTCGACCACTGCGAGGCCCACGGCCGCCGCCACATCCGCTTCCGCGAGCTCGCCGCCGACGTCCTCGGATCTGGATGGGTGTTCTACTTGGTGGTCACCGTGCAAACTGCCATCAACGCCGGTATTACCATCGGGAGCATCCTTCTTGCGGCTGACTGCTTACAAATAATGTACTCGGACCTTGCACCAAATGGACCCCTGAAACTGTACCATTTCATCATCGTCGTCGCTGTGGTTCTGTCCTTGCTCTCCCAGCTGCCGTCGTTCCACTCCCTGCGTTACATCAACCTCGGCTCGCTCCTCCTCAGCTTCGGCTACACCATCCTTGTCTCAGCTGCCTGCATCCGAGCAGGTGCTTTGAGCGATGTCCCGGAGAAGGATTACTCCCTGAGCTCATCCAATTCGGAGAAGACCTTCAATGCGTTCCTCTCCATTTCCATCCTCGCCTCCGTCTTCGGCAATGGCATTCTGCCTGAAATCCAGGCGACGCTGGCGCCGCCGGCGGCCGGGAAGATGATGAAGGCGCTGGTGCTGTGCTACACGGTGGTGTTGTTCACCTTCTACTTGCCGGCGATCACCGGCTACTGGGCGTTCGGCAGCCAGGTGCAGTCCAACGTCCTGCAGAGCCTCATGCCGGACAAGGGCCCTTCCCTGGCGCCGACGTGGCTGCTCGGCCTCGCCGTCGTGCTCGTCCTCCTCCAGCTGCTCGCCATCGCGCTCGTCTACTCCCAGGTGGCGTACGAGATCATGGAGAAGAGCTCGGCCGACGCGGCGCGCGGCCGGTTCTCGCGGCGGAACGTGGCGCCCCGGGTGGCGCTCCGGACGGCGTACGTCGCGGCGTGCGCGTTCGTGGCCGCGATGCTGCCCTTCTTCGGCGACATCGTCGGCGTCGTCGGCGCCGTCGGCTTCATCCCGCTCGACTTCGTGCTCCCCGTCGTCATGTACAACATGGCGCTCGCACCGCCGAGGCGGTCGCCGGTGTACCTCGCCAACGTCGCCATCATGGTCGTCTTCACCGGCGTCGGCCTCATCGGCGCCGTCGCCTCCGTACGGAAGCTCGTGCTCGACGCCGGCCAGTTCAAGCTCTTCAGCGGCAACGTCGTGGACTGAAATGGACCTAACGAATAGCGATAGTGCTTGGTTTTTGGCGCCTTTTTGACTATTGACATTTGTATTCATTAGGTTTCACAAAAAAAAAACATTGTAAAAGAGAAAGAGGAAAAATCATCGATTCATGAAGAAAAAGAAAAGGCCAAAAAACGTAAAGACGCGTGTGCTGAAGAAAGTTCACTAAGGTGTTGTGTTGTAAATTTCATGAACACTGGTGAAAATTCC]


>consensus_8290#0 CCCTGTAAGGCTGTAAGGTGTAAGTGTGTTCAGCGAGATGCGAGCTTCTTCTTGACCTCG ACGTAGATCCATGGCCGGCACCGGAGGCAGCCCTCTGCTCCGCTCTCCCTCTCCGGTGAT GAACACCATGCCGACGCCGCCCTCCGCCGCGGTGTTCGACGTCGAGGCCGCGTCCGGCGC TCGCCGCCTTGGCATCAAGCCCGCCGCCGACGCCGGCGCCGCCTTCGTGCTCGAGTCCAA AGGGAAGTGGTGGCACGCCGGGTTCCACCTGACGACGGCGATCGTGGGGCCGACGGTGCT GACGCTCCCGTACGCGCTGCGGGGGATGGGGTGGGCGCTCGGCCTGGTGGCGCTCACCGC CGTCGCCGCCGTCACCTTCTACGCCTACTACCTCATGTCCAGGGTCCTCGACCACTGCGA GGCCCACGGCCGCCGCCACATCCGCTTCCGCGAGCTCGCCGCCGACGTCCTCGGATCTGG ATGGGTGTTCTACTTGGTGGTCACCGTGCAAACTGCCATCAACGCCGGTATTACCATCGG GAGCATCCTTCTTGCGGCTGACTGCTTACAAATAATGTACTCGGACCTTGCACCAAATGG ACCCCTGAAACTGTACCATTTCATCATCGTCGTCGCTGTGGTTCTGTCCTTGCTCTCCCA GCTGCCGTCGTTCCACTCCCTGCGTTACATCAACCTCGGCTCGCTCCTCCTCAGCTTCGG CTACACCATCCTTGTCTCAGCTGCCTGCATCCGAGCAGGTGCTTTGAGCGATGTCCCGGA GAAGGATTACTCCCTGAGCTCATCCAATTCGGAGAAGACCTTCAATGCGTTCCTCTCCAT TTCCATCCTCGCCTCCGTCTTCGGCAATGGCATTCTGCCTGAAATCCAGGCGACGCTGGC GCCGCCGGCGGCCGGGAAGATGATGAAGGCGCTGGTGCTGTGCTACACGGTGGTGTTGTT CACCTTCTACTTGCCGGCGATCACCGGCTACTGGGCGTTCGGCAGCCAGGTGCAGTCCAA CGTCCTGCAGAGCCTCATGCCGGACAAGGGCCCTTCCCTGGCGCCGACGTGGCTGCTCGG CCTCGCCGTCGTGCTCGTCCTCCTCCAGCTGCTCGCCATCGCGCTCGTCTACTCCCAGGT GGCGTACGAGATCATGGAGAAGAGCTCGGCCGACGCGGCGCGCGGCCGGTTCTCGCGGCG GAACGTGGCGCCCCGGGTGGCGCTCCGGACGGCGTACGTCGCGGCGTGCGCGTTCGTGGC CGCGATGCTGCCCTTCTTCGGCGACATCGTCGGCGTCGTCGGCGCCGTCGGCTTCATCCC GCTCGACTTCGTGCTCCCCGTCGTCATGTACAACATGGCGCTCGCACCGCCGAGGCGGTC GCCGGTGTACCTCGCCAACGTCGCCATCATGGTCGTCTTCACCGGCGTCGGCCTCATCGG CGCCGTCGCCTCCGTACGGAAGCTCGTGCTCGACGCCGGCCAGTTCAAGCTCTTCAGCGG CAACGTCGTGGACTGAAATGGACCTAACGAATAGCGATAGTGCTTGGTTTTTGGCGCCTT TTTGACTATTGACATTTGTATTCATTAGGTTTCACAAAAAAAAAACATTGTAAAAGAGAA AGAGGAAAAATCATCGATTCATGAAGAAAAAGAAAAGGCCAAAAAACGTAAAGACGCGTG TGCTGAAGAAAGTTCACTAAGGTGTTGTGTTGTAAATTTCATGAACACTGGTGAAAATTC C



consensusID : consensus_8290#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 749
fasta sequence
                              [TGAAGGCGCTTGTGCTGTGCTACTCCGTCATAGCCTTCGCCTTCTACATCCCTTCGATCACCGGCTACTGGGCGTTCGGCAGCCACGTCCAGTCCAACGTCCTCAAGAGCCTCATGCCGGACACCGGCCCGGCCCTCGCCCCGACGTGGCTGCTCGGCCTCGCCGTCCTCTTCGTCCTCCTCCAGCTCCTCGCCATCGGCCTCGTTTACTCCCAGGTGGCGTACGAGATCATGGAGAAGAGCTCCGCGGACGCGACGCGGGGGAAGTTCTCGCGGCGGAACGTGGTGCCCCGGCTGCTCCTGCGGACGCTCTACCTCGCCTTCTGCGCGTTCATGGCGGCCATGCTGCCCTTCTTCGGCGACATCGTCGGCGTGGTCGGCGCCGTGGGGTTCATCCCGCTCGACTTCGTCCTCCCCGTCGTCATGTACAACATCGCGCTCGCGCCGCCCAGGCGGTCGCCGATGTTCCTCGCCAACACGGCCATCATGGTCGTCTTCTCCGGCGTCGGGGCCATCGGCGCATTCGCCTCCATACGGAAGCTCGTGCTCGACGCTGGACAGTTTAAGCTCTTCAGCAACAACGTCGTGGACTAAATTGAATTATATATGTCCGTATATAGGAGGTATATATATATAGGCAGCATATATATATATATATCTTCTAGCTAGGTCCTTAATTACATTGTATCTTGAGAGGTATATAGCTTAATTTGTTACTTCTTTCTTCGGGCGTACAGATATAGTTACATA]

[-] EMBL CB647205             [TGAAGGCGCTTGTGCTGTGCTACTCCGTCATAGCCTTCGCCTTCTACATCCCTTCGATCACCGGCTACTGGGCGTTCGGCAGCCACGTCCAGTCCAACGTCCTCAAGAGCCTCATGCCGGACACCGGCCCGGCCCTCGCCCCGACGTGGCTGCTCGGCCTCGCCGTCCTCTTCGTCCTCCTCCAGCTCCTCGCCATCGGCCTCGTTTACTCCCAGGTGGCGTACGAGATCATGGAGAAGAGCTCCGCGGACGCGACGCGGGGGAAGTTCTCGCGGCGGAACGTGGTGCCCCGGCTGCTCCTGCGGACGCTCTACCTCGCCTTCTGCGCGTTCATGGCGGCCATGCTGCCCTTCTTCGGCGACATCGTCGGCGTGGTCGGCGCCGTGGGGTTCATCCCGCTCGACTTCGTCCTCCCCGTCGTCATGTACAACATCGCGCTCGCGCCGCCCAGGCGGTCGCCGATGTTCCTCGCCAACACGGCCATCATGGTCGTCTTCTCCGGCGTCGGGGCCATCGGCGCATTCGCCTCCATACGGAAGCTCGTGCTCGACGCTGGACAGTTTAAGCTCTTCAGCAACAACGTCGTGGACTAAATTGAATTATATATGTCCGTATATAGGAGGTATATATATATAGGCAGCATATATATATATATATCTTCTAGCTAGGTCCTTAATTACATTGTATCTTGAGAGGTATATAGCTTAATTTGTTACTTCTTTCTTCGGGCGTACAGATATAGTTACATA]
[-] EMBL CB647196             [                                                                                        CCAGTCCAACGTCCTCAAGAGCCTCATGCCGGACACCGGCCCGGCCCTCGCCCCGACGTGGCTGCTCGGCCTCGCCGTCCTCTTCGTCCTCCTCCAGCTCCTCGCCATCGGCCTCGTCTACTCCCAGGTGGCGTACGAGATCATGGAGAAGAGCTCCGCGGACGCGACGCGGGGGAAGTTCTCGCGGCGGAACGTGGTGCCCCGGCTGCTCCTGCGGACGCTCTACCTCGCCTTCTGCGCGTTCATGGCGGCCATGCTGCCCTTCTTCGGCGACATCGTCGGCGTGGTCGGCGCCGTGGGGTTCATCCCGCTCGACTTCGTCCTCCCCGTCGTCATGTACAACATCGCGCTCGCGCCGCCCAGGCGGTCGCCGATGTTCCTCGCCAACACGGCCATCATGGTCGTCTTCTCCGGCGTCGGGGCCATCGGCGCATTCGCCTCCATACGGAAGCTCGTGCTCGACGCTGGACAGTTTAAGCTCTTCAGCAACAACGTCGTGGACTAAATTGAATTATATATGTCCGTATATAGGAGGTATATATATATAGGCAGCATATATATATATATATCTTCTAGCTAGGTCCTTAATTACATTGTATCTTGAGAGGTATATAGCTTAATTTGTTACTTCTTTGGTCGGGCGTACAGATATA        ]


>consensus_8290#1 TGAAGGCGCTTGTGCTGTGCTACTCCGTCATAGCCTTCGCCTTCTACATCCCTTCGATCA CCGGCTACTGGGCGTTCGGCAGCCACGTCCAGTCCAACGTCCTCAAGAGCCTCATGCCGG ACACCGGCCCGGCCCTCGCCCCGACGTGGCTGCTCGGCCTCGCCGTCCTCTTCGTCCTCC TCCAGCTCCTCGCCATCGGCCTCGTTTACTCCCAGGTGGCGTACGAGATCATGGAGAAGA GCTCCGCGGACGCGACGCGGGGGAAGTTCTCGCGGCGGAACGTGGTGCCCCGGCTGCTCC TGCGGACGCTCTACCTCGCCTTCTGCGCGTTCATGGCGGCCATGCTGCCCTTCTTCGGCG ACATCGTCGGCGTGGTCGGCGCCGTGGGGTTCATCCCGCTCGACTTCGTCCTCCCCGTCG TCATGTACAACATCGCGCTCGCGCCGCCCAGGCGGTCGCCGATGTTCCTCGCCAACACGG CCATCATGGTCGTCTTCTCCGGCGTCGGGGCCATCGGCGCATTCGCCTCCATACGGAAGC TCGTGCTCGACGCTGGACAGTTTAAGCTCTTCAGCAACAACGTCGTGGACTAAATTGAAT TATATATGTCCGTATATAGGAGGTATATATATATAGGCAGCATATATATATATATATCTT CTAGCTAGGTCCTTAATTACATTGTATCTTGAGAGGTATATAGCTTAATTTGTTACTTCT TTCTTCGGGCGTACAGATATAGTTACATA



consensusID : consensus_8290#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 723
fasta sequence
                              [GCGCACGCGGCGTTCGACGCCGAGGCCGGCGCGGCCGCCAAGCCGCCCGCCGCCGACGCCGGCGCCGCCTTCGTGCTCGAGTCCAAAGGGACGTGGTGGCACGCCGGGTTCCACCTGACGACGGCGATCGTGGGGCCGACGGTGCTGACGCTGCCGTACGCGCTGCGCGGGATGGGGTGGGCGCTGGGACTCACCGTGCTCACCGCCGTCGGCGCCGTCACCTTCTACGAGTACTCCCTCATGTCCCGCGTCCTCGAGCACTGCGAGGCCCGCGGCCGCCGCCACATCCGCTTCCGCGAGCTCGCCGCCGACGTCCTCGGGTCCGGGTGGATGTTTTACTTCGTGGTCATCGTGCAGACGGCCATCAACACCGGCGTTAGCATCGGCACCATCCTGCTCGCCGCCGATTGCCTCGAGATCATGTATACGAGCCTTTCTCCCAATGGTCCCCTGAAACTGTACCACTTCATCATCATAGTAGCTGTGGCGCTGGCCTTCCTCTCCCAGCTACCATCATTCCATTCCCTGCGGCACATTAACTTTGCCTCTCTGCTCTTGAGCTTGGGCTACACCATCCTTGTATCTGCTGCTTGCATTGGTGCAGG-TCTGTCAAAAGATGCTCCCGGGGAA-GATTACACGCTTAACTCGTCCAAATCAGAACAGACCTTCCATGCCTTCCTCTCTATTTCTATCCTGGCTTCTGTTTACGGCAACCGCATACTG]

[+] EMBL CB647204             [GCGCACGCGGCGTTCGACGCCGAGGCCGGCGCGGCCGCCAAGCCGCCCGCCGCCGACGCCGGCGCCGCCTTCGTGCTCGAGTCCAAAGGGACGTGGTGGCACGCCGGGTTCCACCTGACGACGGCGATCGTGGGGCCGACGGTGCTGACGCTGCCGTACGCGCTGCGCGGGATGGGGTGGGCGCTGGGACTCACCGTGCTCACCGCCGTCGGCGCCGTCACCTTCTACGAGTACTCCCTCATGTCCCGCGTCCTCGAGCACTGCGAGGCCCGCGGCCGCCGCCACATCCGCTTCCGCGAGCTCGCCGCCGACGTCCTCGGGTCCGGGTGGATGTTTTACTTCGTGGTCATCGTGCAGACGGCCATCAACACCGGCGTTAGCATCGGCACCATCCTGCTCGCCGCCGATTGCCTCGAGATCATGTATACGAGCCTTTCTCCCAATGGTCCCCTGAAACTGTACCACTTCATCATCATAGTAGCTGTGGCGCTGGCCTTCCTCTCCCAGCTACCATCATTCCATTCCCTGCGGCACATTAACTTTGCCTCTCTGCTCTTGAGCTTGGGCTACACCATCCTTGTATCTGCTGCTTGCATTGGTGCAGG TCTGTCAAAAGATGCTCCCGGGGAA GATTACACGCTTAACTCGTCCAAATCAGAACAGACCTTCCATGCCTTCCTCTCTATTTCTATCCTGGCTTCTGTTTACGGCAACCGCATACTG]
[+] EMBL CB647195             [GCGCACGCCGCGTTCGACGCCGAGGCCGGCGCGGCCGCCAAGCCGCCCGCCGCCGACGCCGGCGCCGCCTTCGTGCTCGAGTCCAAAGGGACGTGGTGGCACGCCGGGTTCCACCTGACGACGGCGATCGTGGGGCCGACGGTGCTGACGCTGCCGTACGCGCTGCGCGGGATGGGGTGGGCGCTGGGACTCACCGTGCTCACCGCCGTCGGCGCCGTCACCTTCTACGAGTACTCCCTCATGTCCCGCGTCCTCGAGCACTGCGAGGCCCGCGGCCGCCGCCACATCCGCTTCCGCGAGCTCGCCGCCGACGTCCTCGGGTCCGGGTGGATGTTTTACTTCGTGGTCATCGTGCAGACGGCCATCAACACCGGCGTTAGCATCGGCACCATCCTGCTCGCCGCCGATTGCCTCGAGATCATGTATACGAGCCTTTCTCCCAATGGTCCCCTGAAACTGTACCACTTCATCATCATAGTAGCTGTGGCGCTGGCCTTCCTCTCCCAGCTACCATCATTCCATTCCCTGCGGCACATTAACTTTGCCTCTCTGCTCTTGAGCTTGGGCTACACCATCCTTGTATCTGCTGCTTGCATTGGTGCAGGCGCTGTC AAAGATGCT CCGGGGAAGGATTACACGCTTACCTCGTCCAAATCAGACCAGACCTTCCATGCCTTCCTCTCTATTTCTATC                              ]


>consensus_8290#2 GCGCACGCGGCGTTCGACGCCGAGGCCGGCGCGGCCGCCAAGCCGCCCGCCGCCGACGCC GGCGCCGCCTTCGTGCTCGAGTCCAAAGGGACGTGGTGGCACGCCGGGTTCCACCTGACG ACGGCGATCGTGGGGCCGACGGTGCTGACGCTGCCGTACGCGCTGCGCGGGATGGGGTGG GCGCTGGGACTCACCGTGCTCACCGCCGTCGGCGCCGTCACCTTCTACGAGTACTCCCTC ATGTCCCGCGTCCTCGAGCACTGCGAGGCCCGCGGCCGCCGCCACATCCGCTTCCGCGAG CTCGCCGCCGACGTCCTCGGGTCCGGGTGGATGTTTTACTTCGTGGTCATCGTGCAGACG GCCATCAACACCGGCGTTAGCATCGGCACCATCCTGCTCGCCGCCGATTGCCTCGAGATC ATGTATACGAGCCTTTCTCCCAATGGTCCCCTGAAACTGTACCACTTCATCATCATAGTA GCTGTGGCGCTGGCCTTCCTCTCCCAGCTACCATCATTCCATTCCCTGCGGCACATTAAC TTTGCCTCTCTGCTCTTGAGCTTGGGCTACACCATCCTTGTATCTGCTGCTTGCATTGGT GCAGGTCTGTCAAAAGATGCTCCCGGGGAAGATTACACGCTTAACTCGTCCAAATCAGAA CAGACCTTCCATGCCTTCCTCTCTATTTCTATCCTGGCTTCTGTTTACGGCAACCGCATA CTG



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_8290#0      CCCTGTAAGGCTGTAAGGTGTAAGTGTGTTCAGCGAGATGCGAGCTTCTTCTTGACCTCG 60
consensus_8290#2      ------------------------------------------------------------
consensus_8290#1      ------------------------------------------------------------
                                                                                  

consensus_8290#0      ACGTAGATCCATGGCCGGCACCGGAGGCAGCCCTCTGCTCCGCTCTCCCTCTCCGGTGAT 120
consensus_8290#2      ------------------------------------------------------------
consensus_8290#1      ------------------------------------------------------------
                                                                                  

consensus_8290#0      GAACACCATGCCGACGCCGCCCTCCGC-CGCGGTGTTCGACGTCGAGGCCGCGTCCGGCG 179
consensus_8290#2      -----------------------GCGCACGCGGCGTTCGACGCCGAGGCC------GGCG 31
consensus_8290#1      ------------------TGAAGGCGCTTGTGCTGTGCTACTCCGTCAT-------AGCC 35
                                              ***  * *  ** * **  **            ** 

consensus_8290#0      CTCGCCGCCTTGGCATCAAGCCCGCCGCCGACGCCGGCGCCGCCTTCG-TGCTCGAGTCC 238
consensus_8290#2      CG-GCCGCCAAGCC-----GCCCGCCGCCGACGCCGGCGCCGCCTTCG-TGCTCGAGTCC 84
consensus_8290#1      TTCGCCTTCTACAT-----CCCTTCGATCACCGGCTACTGGGCGTTCGGCAGCCACGTCC 90
                         ***  *           **  *   *  ** *  *   ** ****     *  ****

consensus_8290#0      AAAGGGAAGTGGTGGCACGCCGGGTTCCACCTGACGAC--GGCGATCGTGGGGCCGACGG 296
consensus_8290#2      AAAGGGACGTGGTGGCACGCCGGGTTCCACCTGACGAC--GGCGATCGTGGGGCCGACGG 142
consensus_8290#1      AGTCCAACGTCCTCAAGAGCCTCATGCCGGACACCGGCCCGGCCCTCGCCCCGACGTGGC 150
                      *     * **  *     ***   * **      ** *  ***  ***    * **  * 

consensus_8290#0      TGCT-GACGCTCCCGTACGCGCTGCGGGGGATGGGGTGGGCGCTCGGCCTGGTGGCGCTC 355
consensus_8290#2      TGCT-GACGCTGCCGTACGCGCTGCGCGGGATGGGGTGGGCGCTGGGACTCACCGTGCTC 201
consensus_8290#1      TGCTCGGCCTCGCCGTCCTCTTCGTCCTCCTCCAGCTCCTCGCC---ATCGGCCTCGTTT 207
                      **** * *    **** * *   *          * *   ***             * * 

consensus_8290#0      ACCGCC-GTCGCCGC-CGTCACCTTCTACGCCTACTACCTCATGTCCAGGGTCCTCGACC 413
consensus_8290#2      ACCGCC-GTCGGCGC-CGTCACCTTCTACGAGTACTCCCTCATGTCCCGCGTCCTCGAGC 259
consensus_8290#1      ACTCCCAGGTGGCGTACGAGATCATGGAGAAGAGCT-CCGCGGACGCGACGCGGGGGAAG 266
                      **  ** *  * **  **  * * *  *      ** ** *     *   *     **  

consensus_8290#0      ACTGCGAGGCCCACGGCCGCCGCCACATCCGCTTCCGCGAGCTCGCCGCCGACGTCCTCG 473
consensus_8290#2      ACTGCGAGGCCCGCGGCCGCCGCCACATCCGCTTCCGCGAGCTCGCCGCCGACGTCCTCG 319
consensus_8290#1      TTCTCGCGGCGGAACGTGGT-GCCCCGGCTGCTCCTGCGGACGCTCTACCT-CGCCTTCT 324
                          ** ***     *  *  *** *  * *** * ***  * * *  **  ** * ** 

consensus_8290#0      GATCTGGATGGGTGTTCTACTTGGTGGTCACCGTGCAAACTGCCATCAACGCCGGTATTA 533
consensus_8290#2      GGTCCGGGTGGATGTTTTACTTCGTGGTCATCGTGCAGACGGCCATCAACACCGGCGTTA 379
consensus_8290#1      G---CGCGTTCATGGCGGCCATGCTGCCCTTCTTCGGCGACATCGTCGGCGTGGTCGGCG 381
                      *    *  *   **     * *  **  *  * *         * **  *   *      

consensus_8290#0      CCATCGGGAGCATCCTTCTTGCGGCTGACTGCTTACAAATAATGTACTCGGACCTTGCAC 593
consensus_8290#2      GCATCGGCACCATCCTGCTCGCCGCCGATTGCCTCGAGATCATGTATACGAGCCTTTCTC 439
consensus_8290#1      CCGTGGGGTTCATCCCGCTCGACTTCGTCCTCCCCGTCGTCATGTACA-ACATCGCGCTC 440
                       * * **   *****  ** *     *    *       * *****       *   * *

consensus_8290#0      CAAATGGACCCCTGAAACTGTACCATTTCATCATCGTCGTCGCTGTGGTTCTGTCCTTGC 653
consensus_8290#2      CCAATGGTCCCCTGAAACTGTACCACTTCATCATCATAGTAGCTGTGGCGCTGGCCTTCC 499
consensus_8290#1      GCGCCG--CCCAGGCGGTCGCCGATGTTCCTCGCCAACACGGCCATCATGGTCGTCTTCT 498
                           *  ***  *     *      *** **  *      **  *     *   ***  

consensus_8290#0      TCTCC-CAGCTGCCGTCGTTCCACTCCCTGCGTTACATCAACCTCGGCTCGCTCCTCCTC 712
consensus_8290#2      TCTCC-CAGCTACCATCATTCCATTCCCTGCGGCACATTAACTTTGCCTCTCTGCTCTTG 558
consensus_8290#1      CCGGCGTCGGGGCCATCGGCGCATTCGCCTCCATACGGAAGCTCGTGCTCGACGCTGGAC 558
                       *  *   *   ** **    ** ** *  *   **   * *     ***    **    

consensus_8290#0      AGCTTCGGCTACACCATCCTTGTCTCAGCTGCCTGCATCCGAGCAGGTGCTTTGAGCGAT 772
consensus_8290#2      AGCTTGGGCTACACCATCCTTGTATCTGCTGCTTGCATTGGTGCAGGTCTGTCAAAAGAT 618
consensus_8290#1      AGTTTAAGCT-CTTCAGCAACAACGTCGTGGACTAAATTGAATTATATATGTCCGTATAT 617
                      ** **  *** *  ** *         *  *  *  **      *  *   *      **

consensus_8290#0      GTCCCGGAGAAGGATTACTCCCTGAGCTCATCCAATTCGGAGAAGACCTTCAA--TGCGT 830
consensus_8290#2      GCTCCCGGGGAAGATTACACGCTTAACTCGTCCAAATCAGAACAGACCTTCCA--TGCCT 676
consensus_8290#1      -------AGGAGGTATATATATATAGGCAGCATATATATATATATATCTTCTAGCTAGGT 670
                              * * *  **       *        *  *      * * **** *  *   *

consensus_8290#0      TCCTCTCCAT-TTCCATCCTCGCCTCCGTCTTCGGCAATGGCATTCTGCCTGAAATCCAG 889
consensus_8290#2      TCCTCTCTAT-TTCTATCCTGGCTTCTGTTTACGGCAACCGCATACTG------------ 723
consensus_8290#1      CCTTAATTACATTGTATCTTGAGAGGTATATAGCTTAATTTGTTACTTCTTTCTTCGGGC 730
                       * *    *  **  *** *        * *     **     * **             

consensus_8290#0      GCGACGCTGGCGCCGCCGGCGGCCGGGAAGATGATGAAGGCGCTGGTGCTGTGCTACACG 949
consensus_8290#2      ------------------------------------------------------------
consensus_8290#1      GTACAGATATAGTTACATA----------------------------------------- 749
                                                                                  

consensus_8290#0      GTGGTGTTGTTCACCTTCTACTTGCCGGCGATCACCGGCTACTGGGCGTTCGGCAGCCAG 1009
consensus_8290#2      ------------------------------------------------------------
consensus_8290#1      ------------------------------------------------------------
                                                                                  

consensus_8290#0      GTGCAGTCCAACGTCCTGCAGAGCCTCATGCCGGACAAGGGCCCTTCCCTGGCGCCGACG 1069
consensus_8290#2      ------------------------------------------------------------
consensus_8290#1      ------------------------------------------------------------
                                                                                  

consensus_8290#0      TGGCTGCTCGGCCTCGCCGTCGTGCTCGTCCTCCTCCAGCTGCTCGCCATCGCGCTCGTC 1129
consensus_8290#2      ------------------------------------------------------------
consensus_8290#1      ------------------------------------------------------------
                                                                                  

consensus_8290#0      TACTCCCAGGTGGCGTACGAGATCATGGAGAAGAGCTCGGCCGACGCGGCGCGCGGCCGG 1189
consensus_8290#2      ------------------------------------------------------------
consensus_8290#1      ------------------------------------------------------------
                                                                                  

consensus_8290#0      TTCTCGCGGCGGAACGTGGCGCCCCGGGTGGCGCTCCGGACGGCGTACGTCGCGGCGTGC 1249
consensus_8290#2      ------------------------------------------------------------
consensus_8290#1      ------------------------------------------------------------
                                                                                  

consensus_8290#0      GCGTTCGTGGCCGCGATGCTGCCCTTCTTCGGCGACATCGTCGGCGTCGTCGGCGCCGTC 1309
consensus_8290#2      ------------------------------------------------------------
consensus_8290#1      ------------------------------------------------------------
                                                                                  

consensus_8290#0      GGCTTCATCCCGCTCGACTTCGTGCTCCCCGTCGTCATGTACAACATGGCGCTCGCACCG 1369
consensus_8290#2      ------------------------------------------------------------
consensus_8290#1      ------------------------------------------------------------
                                                                                  

consensus_8290#0      CCGAGGCGGTCGCCGGTGTACCTCGCCAACGTCGCCATCATGGTCGTCTTCACCGGCGTC 1429
consensus_8290#2      ------------------------------------------------------------
consensus_8290#1      ------------------------------------------------------------
                                                                                  

consensus_8290#0      GGCCTCATCGGCGCCGTCGCCTCCGTACGGAAGCTCGTGCTCGACGCCGGCCAGTTCAAG 1489
consensus_8290#2      ------------------------------------------------------------
consensus_8290#1      ------------------------------------------------------------
                                                                                  

consensus_8290#0      CTCTTCAGCGGCAACGTCGTGGACTGAAATGGACCTAACGAATAGCGATAGTGCTTGGTT 1549
consensus_8290#2      ------------------------------------------------------------
consensus_8290#1      ------------------------------------------------------------
                                                                                  

consensus_8290#0      TTTGGCGCCTTTTTGACTATTGACATTTGTATTCATTAGGTTTCACAAAAAAAAAACATT 1609
consensus_8290#2      ------------------------------------------------------------
consensus_8290#1      ------------------------------------------------------------
                                                                                  

consensus_8290#0      GTAAAAGAGAAAGAGGAAAAATCATCGATTCATGAAGAAAAAGAAAAGGCCAAAAAACGT 1669
consensus_8290#2      ------------------------------------------------------------
consensus_8290#1      ------------------------------------------------------------
                                                                                  

consensus_8290#0      AAAGACGCGTGTGCTGAAGAAAGTTCACTAAGGTGTTGTGTTGTAAATTTCATGAACACT 1729
consensus_8290#2      ------------------------------------------------------------
consensus_8290#1      ------------------------------------------------------------
                                                                                  

consensus_8290#0      GGTGAAAATTCC 1741
consensus_8290#2      ------------
consensus_8290#1      ------------
                                  




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)