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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8294#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 1238 fasta sequence
[AATCCACCCGGGGTCCCCCTACCATTTTAACCCCGCGGCCTTAGCCGCTAATGCTCCGCGTTTGAAATCGCTAAGCGCACCCGAAACCCTAGCCCCCTCCCATCCCGAGTCCCGACCGCCATGGGCAAGTACATGCGCAAGGCCAAGGTGGTGGTCTCCGGCGAGGTGGTGGCCGCCGCCGTCATGGAGCTCGCCGCGGCGCCGCTCGGGGTGCGCACCCGCGCCCGCTCCCTCGCGCTGCAGAAGAGGCAGGGCGGGGAGTACCTCGAGCTCAGGAGCCGCAGGCTCGAGAAGCTCCCTCCTCCCCCGCCGCCGCCGCCGAGGAGGAGGGCGACGGCTGCGGCTGCGACTGCTGATGCGACGGCGGCGGAGAGCGCGGAGGCGGAGGTGTCGTTCGGGGGGGAGAACGTCCTCGAGCTGGAGGCCATGGAAAGGAATACCAGGGAGACGACACCTTGCAGCTTGATCAGGGACCCCGATACGATTAGCACCCCTGGATCTACCACAAGGCGCAGCCACTCGAGTTCTCATTGCAAGGTGCAAACACCCGTGCGCCACAACATTATTCCAGCATCA-GCAGAGCTGGAAGCGTTCTTCGCCGCCGAAGAGCAACGGCAACGACAGGCTTTCATCGACAAGTATAACTTTGATCCTGTGAATGACTGCCCTCTTCCCGGCCGATTTGAATGGGTCAAGCTAGACTGATAGATTTTCAGGAAAAGAAGGGCA-CCATGGACCTCTCTGCTCCCTCCACAGTAGTAGCGTGGCAGAGGCGCTTACCGTCAAGTTAGCTTTGATCCTGTTGTAAAAATTTAGGGTTAGCCTGTAGACTCAATGGTCAATGTGAACATACAGAACTGATGCTGAGTTACAACCCTAATCCCTCAACTACAATGTAACCCTTAACAGCTCATTCTGTAAGGAACCACCTCCTCCTCTAGGGCCTAGCTAGCCTTATCATCTGTTATTACCAGTTGCTGGATTAATGAAGTTAGATCTAGATATTGTGTCAAAAAATAACCTGTTGTGTGTGTGGTGGTAGCATTGGCATTGGCAATGGGGTATGGCAGTGTGTGTGTGGTGCTGCACTGCACCTCCCGAAGTGCTGTAATTTTTGTCTATACTTCTGCTAAATTGTCCATCTGAAAAGCTGGTTGCAATGCTTGATAGGGAGTGGCATCTTCATCAGACCCCAGTATACTACCTGTGCCATTATTGCTAAAAAAAAAAAAAAAAAA]
[+] EMBL AK073804 [AATCCACCCGGGGTCCCCCTACCATTTTAACCCCGCGGCCTTAGCCGCTAATGCTCCGCGTTTGAAATCGCTAAGCGCACCCGAAACCCTAGCCCCCTCCCATCCCGAGTCCCGACCGCCATGGGCAAGTACATGCGCAAGGCCAAGGTGGTGGTCTCCGGCGAGGTGGTGGCCGCCGCCGTCATGGAGCTCGCCGCGGCGCCGCTCGGGGTGCGCACCCGCGCCCGCTCCCTCGCGCTGCAGAAGAGGCAGGGCGGGGAGTACCTCGAGCTCAGGAGCCGCAGGCTCGAGAAGCTCCCTCCTCCCCCGCCGCCGCCGCCGAGGAGGAGGGCGACGGCTGCGGCTGCGACTGCTGATGCGACGGCGGCGGAGAGCGCGGAGGCGGAGGTGTCGTTCGGGGGGGAGAACGTCCTCGAGCTGGAGGCCATGGAAAGGAATACCAGGGAGACGACACCTTGCAGCTTGATCAGGGACCCCGATACGATTAGCACCCCTGGATCTACCACAAGGCGCAGCCACTCGAGTTCTCATTGCAAGGTGCAAACACCCGTGCGCCACAACATTATTCCAGCATCA GCAGAGCTGGAAGCGTTCTTCGCTGCCGAAGAGCAACGGCAACGACAGGCTTTCATCGACAAGTATAACTTTGATCCTGTGAATGACTGCCCTCTTCCCGGCCGGTTTGAATGGGTCAAGCTAGACTGATAGATTTTCAGGAAAAGAAGGGCA CCATGGACCTCTCTGCTCCCTCCACAGTAGTAGCGTGGCAGAGGCGCTTACCGTCAAGTTAGCTTTGATCCTGTTGTAAAAATTTAGGGTTAGCCTGTAGACTCAATGGTCAATGTGAACATACAGAACTGATGCTGAGTTACAACCCTAATCCCTCAACTACAATGTAACCCTTAACAGCTCATTCTGTAAGGAACCACCTCCTCCTCTAGGGCCTAGCTAGCCTTATCATCTGTTATTACCAGTTGCTGGATTAATGAAGTTAGATCTAGATATTGT ]
[+] EMBL CA753253 [ TTTAA CCCGCGGCCTTAGCCGCTAATGCTCCGCGTTTGAAATCGCTAAGCGCACCCGAAACCCTAGCCCCCTCCCATCCCGAGTCCCGACCGCCATGGGCAAGTACATGCGCAAGGCCAAGGTGGTGGTCTCCGGCGAGGTGGTGGCCGCCGCCGTCATGGAGCTCGCCGCGGCGCCGCTCGGGGTGCGCACCCGCGCCCGCTCCCTCGCGCTGCAGAAGAGGCAGGGCGGGGAGTACCTCGAGCTCAGGAGCCGCAGGCTCGAGAAGCTCCCTCCTCCCCCGCCGCCGCCGCCGAGGAGGAGGGCGACGGCTGCGGCTGCGACTGCTGATGCGACGGCGACGGAGAGCGCGGAGGCGGAGGTGTCGTTCGGGGGGGAGAACGTCCTCGAGCTGGAGGCCATGGAAAGGAATACCAGGGAGACGACACCTTGCAGCTTGATCAGGGACCCCGATACGATTAGCACCCCTGGATCTACCACAAGGCGCAGCCACTCCAGTTCTCATTGCAAAGTGCAAACACCCGTGCGCCACAACATTATCCCACCATCA GCATAGCTGGAACCGTTCTTCGCCGCCGAAGAGCAACGGCACCGACCGGC TTCTTCGACAATTATAAC TTGATCCTGTGAATACCTGCCC CNTCCCGGCCAATTT AATGGGT AACCTAac ]
[+] EMBL BI812917 [ TCTACCACAAGGCGCA CCACTCGAGTTCTCATTGCAAGGT CAAACACCCGTGC CCACAACATTATTCCAGCATCACGCAGAGCTGGAAGCGTTCTTC CCGCCGAAGAGCAACGGCAACGACAGGCTTTCATCGACAAGTATAACTTTGATCCTGTGAATGACTGCCCTCTTCCC GCCGATTTGAAT GGTCAAGCTAGACTGATAGATTTTCAGGAAAAGAAGGGCACCCATGGACCTCTCTGCTCCCTCCACAGTAGTAGCGT GCAGAGGCGCTTACCGTCAAGTTAGCTTTGATCCTGTTGTAAAAATTTAGGGTTAGCCTGTAGACTCAATGGTCAATGTGAACATACAGAACTGATGCTGAGTTACAACCCTAATCCCTCAA TACAATGTAACCCTTAACAGCTCATTCTGTAAGGAACCACCTCCTCCTCTAGGGCCTAGCTAGCCTTATCATCTGTTATTACCAGTTGCTGGATTAATGAAGTTAGATCTAGATATTGTGTCAAAAAA ]
[+] EMBL CA758266 [ ATGGGTCAAGCTAGACTGATAGATTTTCAGGAAAAGAAGGGCA CCATGGACCTCTCTGCTCCCTCCACAGTAGTAGCGTGGCAGAGGCGCTTACCGTCAAGTTAGCTTTGATCCTGTTGTAAAAATTTAGGGTTAGCCTGTAGACTCAATGGTCAATGTGAACATACAGAACTGATGCTGAGTTACAACCCTAATCCCTCAACTACAATGTAACCCTTAACAGCTCATTCTGTAAGGAACCACCTCCTCCTCTAGGGCCTAGCTAGCCTTATCATCTGTTATTACCAGTTGCTGGATTAATGAAGTTAGATCTAGATATTGTGTCACAGTTTAACCTGTTGTGTGTGTGGTGGTAGCATTGGCATTGGCAATGGGGTATGGCAGTGTGTGTGTGGTGCTGCACTGCACCTCCCGAAGTGCTGTAATTTTTGTCTATACTTCTGCTAAATTGTCCATCTGAAAAGCTGGTTGCAATGCTTGATAGGGAGTGGCATCTTCATCAGACCCCAGTATACTACCTGTGCCATTATTGCTAAAAAAAAAAAAAAAAAA]
consensusID : consensus_8294#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 916 fasta sequence
[CTCCTCCACCCTCCAAATCCACCCGGGGTCCCCCTACCATTTTAACCCCGCGGCCTTAGCCGCTAATGCTCCGCGTTTGAAATCGCTAAGCGCACCCGAAACCCTAGCCCCCTCCCCTCCCGAGTCCCGACCGCCATGGGCAAGTACATGCGCAAGGCCAAGGTGGTGGTCTCCGGCGAGGTGGTGGCCGCCGCCGTCATGGAACTCGCCGCGGCGCCGCTCGGGGTGCGCACCCGCGCCCGCTCCCTCGCGCTGCAGAAGAGGCAGGGCGGGGAGTACCTCGAGCTCAGGAGCCGCAGGCTCGAGAAGCTCCCTCCTCCCCCGCCGCCGCCGCCGAGGAGGAGGGCGACGGCTGCGGCTGCGACTGCTGATGCGACGGCGGCGGAGAGCGCGGAGGCGGAGGTGTCGTTCGGGGGGGAGAACGTCCTCGAGCTGGAGGCCATGGAAAGGTGGGGATTCTCTCTCTCTTCTTATTGTGCGATTCTTTTTTTGTTTTTCGTGGGTTTCTTGGTTGGATTGATTGGGGGAATCGCGTGATTAGGGTTCAGGGTTTAAGCACCGTACGGGAGTTCTTGGGGTTCGATGTTTCTATCCGGTTTTTCGCATCGGAAAATTTTGGGGATTTTTTTTCGGTGCGATTGTGGCGCTCGGAATTCCTGTGGCCAGTTTTGGGGTTTCGAAAGTATCGAAATGGAGGCGAGGAATCTTTTTTTTTTCCATCACACGCGGTTGTAAAGCCCCGATGCTTTCTTGGTGGGATTCTTGTCCCTTTGCTAATTGAGACATGCAATTCGTGCTTTCCTTGTTGCCTAAATTTGTTCTTTTTCCATGTTTCTTGTGGCGATACAGCCTTTTCTTTTTGCCAATTTCTTGTCCCTTAGCTTGTTTACAAGTTAGAACCCATTTTAACTTCTTT]
[+] EMBL AK064173 [CTCCTCCACCCTCCAAATCCACCCGGGGTCCCCCTACCATTTTAACCCCGCGGCCTTAGCCGCTAATGCTCCGCGTTTGAAATCGCTAAGCGCACCCGAAACCCTAGCCCCCTCCCCTCCCGAGTCCCGACCGCCATGGGCAAGTACATGCGCAAGGCCAAGGTGGTGGTCTCCGGCGAGGTGGTGGCCGCCGCCGTCATGGAACTCGCCGCGGCGCCGCTCGGGGTGCGCACCCGCGCCCGCTCCCTCGCGCTGCAGAAGAGGCAGGGCGGGGAGTACCTCGAGCTCAGGAGCCGCAGGCTCGAGAAGCTCCCTCCTCCCCCGCCGCCGCCGCCGAGGAGGAGGGCGACGGCTGCGGCTGCGACTGCTGATGCGACGGCGGCGGAGAGCGCGGAGGCGGAGGTGTCGTTCGGGGGGGAGAACGTCCTCGAGCTGGAGGCCATGGAAAGGTGGGGATTCTCTCTCTCTTCTTATTGTGCGATTCTTTTTTTGTTTTTCGTGGGTTTCTTGGTTGGATTGATTGGGGGAATCGCGTGATTAGGGTTCAGGGTTTAAGCACCGTACGGGAGTTCTTGGGGTTCGATGTTTCTATCCGGTTTTTCGCATCGGAAAATTTTGGGGATTTTTTTTCGGTGCGATTGTGGCGCTCGGAATTCCTGTGGCCAGTTTTGGGGTTTCGAAAGTATCGAAATGGAGGCGAGGAATCTTTTTTTTTTCCATCACACGCGGTTGTAAAGCCCCGATGCTTTCTTGGTGGGATTCTTGTCCCTTTGCTAATTGAGACATGCAATTCGTGCTTTCCTTGTTGCCTAAATTTGTTCTTTTTCCATGTTTCTTGTGGCGATACAGCCTTTTCTTTTTGCCAATTTCTTGTCCCTTAGCTTGTTTACAAGTTAGAACCCATTTTAACTTCTTT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_8294#0 ---------------AATCCACCCGGGGTCCCCCTACCATTTTAACCCCGCGGCCTTAGC 45
consensus_8294#1 CTCCTCCACCCTCCAAATCCACCCGGGGTCCCCCTACCATTTTAACCCCGCGGCCTTAGC 60
*********************************************
consensus_8294#0 CGCTAATGCTCCGCGTTTGAAATCGCTAAGCGCACCCGAAACCCTAGCCCCCTCCCATCC 105
consensus_8294#1 CGCTAATGCTCCGCGTTTGAAATCGCTAAGCGCACCCGAAACCCTAGCCCCCTCCCCTCC 120
******************************************************** ***
consensus_8294#0 CGAGTCCCGACCGCCATGGGCAAGTACATGCGCAAGGCCAAGGTGGTGGTCTCCGGCGAG 165
consensus_8294#1 CGAGTCCCGACCGCCATGGGCAAGTACATGCGCAAGGCCAAGGTGGTGGTCTCCGGCGAG 180
************************************************************
consensus_8294#0 GTGGTGGCCGCCGCCGTCATGGAGCTCGCCGCGGCGCCGCTCGGGGTGCGCACCCGCGCC 225
consensus_8294#1 GTGGTGGCCGCCGCCGTCATGGAACTCGCCGCGGCGCCGCTCGGGGTGCGCACCCGCGCC 240
*********************** ************************************
consensus_8294#0 CGCTCCCTCGCGCTGCAGAAGAGGCAGGGCGGGGAGTACCTCGAGCTCAGGAGCCGCAGG 285
consensus_8294#1 CGCTCCCTCGCGCTGCAGAAGAGGCAGGGCGGGGAGTACCTCGAGCTCAGGAGCCGCAGG 300
************************************************************
consensus_8294#0 CTCGAGAAGCTCCCTCCTCCCCCGCCGCCGCCGCCGAGGAGGAGGGCGACGGCTGCGGCT 345
consensus_8294#1 CTCGAGAAGCTCCCTCCTCCCCCGCCGCCGCCGCCGAGGAGGAGGGCGACGGCTGCGGCT 360
************************************************************
consensus_8294#0 GCGACTGCTGATGCGACGGCGGCGGAGAGCGCGGAGGCGGAGGTGTCGTTCGGGGGGGAG 405
consensus_8294#1 GCGACTGCTGATGCGACGGCGGCGGAGAGCGCGGAGGCGGAGGTGTCGTTCGGGGGGGAG 420
************************************************************
consensus_8294#0 AACGTCCTCGAGCTGGAGGCCATGGAAAGGAATACCAGGGAGACGACACCTTGCAGCTTG 465
consensus_8294#1 AACGTCCTCGAGCTGGAGGCCATGGAAAGGT-------GGGGATTCTCTCTCTCTTCTTA 473
****************************** ** ** ** * ***
consensus_8294#0 ATCAGGGACCCCGATACGATTAGCACCCCTGGATCTACCACAAGGCGCAGCCACTCGAGT 525
consensus_8294#1 TTGTGCGATTCTTTT---TTTGTTTTTCGTGGGTTTCTTGGTTGGATTGATTGGGGGAAT 530
* * ** * * ** * *** * * ** ** *
consensus_8294#0 TCTCATTGCAAGGTGCAAACACCCGTGCGCCACAACATTATTCCAGCATCAGCAGAGCTG 585
consensus_8294#1 -CGCGTGATTAGGGTTCAGGGTTTAAGCACCGTACGGGAGTTCTTGGGGTTCGATGTTTC 589
* * * *** * ** ** * *** * * *
consensus_8294#0 GAAGCGTTCTTCGCCGCCGAAGAGCAACGGCAACGACAGGCTTTCATCGACAAGTATAAC 645
consensus_8294#1 TATCCGGTTTTTCGCATCGGAAAATTTTGGGGAT------TTTTTTTCG----GTGCGAT 639
* ** * ** * ** * * ** * *** *** ** *
consensus_8294#0 TTTGATCCTGTGAATGACTGCCCTCTTCCCGGCCGATTTGAATGGGTCAAGCTAGAC-TG 704
consensus_8294#1 TGTGGCGCTCGGAATTCCTGTGGCCAGTTTTGGGGTTTCGAAAGTATCGAAATGGAGGCG 699
* ** ** **** *** * * * ** *** * ** * * ** *
consensus_8294#0 ATAGATTTTCAGGAAAAGAAGGGCACCATGGACCTCTCTGCTCCCTCCACAGTAGTAGCG 764
consensus_8294#1 AGGAATCTTTTT--------TTTTTCCATCACACGCGGTTGTAAAGCCCCGATGCTTTCT 751
* ** ** **** * * * * ** * * * *
consensus_8294#0 TGGCAGAGGCGCTTACCGTCAAGTTAGCTTTGATCCTGTTGTAAAAATTTAGGGTTAGCC 824
consensus_8294#1 TGGTGG-GATTCTTGTCCCTTTGCTAATTGAGA-CATGC------AATTCGTGCTTTCCT 803
*** * * *** * * ** * ** * ** **** * ** *
consensus_8294#0 TGTAGACTCAATGGTCAATGTGAACATACAGAACTGATGCTGAGTTACAACCCTAATCCC 884
consensus_8294#1 TGTTGCCTAAATTTGTTCTTTTTCCATGT----TTCTTGTGGCGATACAGCCTTTTCTTT 859
*** * ** *** * * *** * ** * * **** ** *
consensus_8294#0 TCAACTACAATGTAACCCTTAACAGCTCATTCTGTAAGGAACCACCTCCTCCTCTAGGGC 944
consensus_8294#1 TTGCCAATTTCTTGTCCCTTAGCTTGTTTACAAGTTAGAACCCATTTTAACTTCTTT--- 916
* * * * ****** * * ** ** * *** * * ***
consensus_8294#0 CTAGCTAGCCTTATCATCTGTTATTACCAGTTGCTGGATTAATGAAGTTAGATCTAGATA 1004
consensus_8294#1 ------------------------------------------------------------
consensus_8294#0 TTGTGTCAAAAAATAACCTGTTGTGTGTGTGGTGGTAGCATTGGCATTGGCAATGGGGTA 1064
consensus_8294#1 ------------------------------------------------------------
consensus_8294#0 TGGCAGTGTGTGTGTGGTGCTGCACTGCACCTCCCGAAGTGCTGTAATTTTTGTCTATAC 1124
consensus_8294#1 ------------------------------------------------------------
consensus_8294#0 TTCTGCTAAATTGTCCATCTGAAAAGCTGGTTGCAATGCTTGATAGGGAGTGGCATCTTC 1184
consensus_8294#1 ------------------------------------------------------------
consensus_8294#0 ATCAGACCCCAGTATACTACCTGTGCCATTATTGCTAAAAAAAAAAAAAAAAAA 1238
consensus_8294#1 ------------------------------------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||