cluster # 830

These datas are free for academic use only, please contact me for any other use.

Oryza sativa
cluster # 830 cluster # 830 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_830#0 length = 665 sequences # 1

consensus_830#1 length = 281 sequences # 1

consensusID : consensus_830#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 665
fasta sequence

                              [TTTTTTTTTTTTTTTTTCAGCCTTAAAAAGTTTTAGTAGACAACTATTTTCTGGGAATCTCTGATCCTTCACAGGAGGGCTACTAGATGCTTAAACCAGTACAAAGAGGACTTTGCTCGGGCTGCTTTTCACTAAACATTTCGTAAATAATTACATGGCCTCATGATCTCATCTATATGCTAGTTTTCGAAGGGACTTCATTAAAACGATTACAATTACATGCTAGTTTTGGGAAGCATTCAGGTCGCTTCAAGAATAATAGCACTATTGATAGAGGTAAGCAATTCTGAAAGTCTGCCTGTCTGTTAAACTACTGAGCTAGGTCACGTCATCCTTCTTTCGCACCTGATTTCGATGCCACCAGCAACCACGTCCTAAGCTATGCATGTCTTGTACTTTTTGGAACCATATCCAATGATTGCTCTTTGCTAAGGGAGACACCATCAAAATTATTGGTGTTCAACATGGATGATTCTTTCCTGAGGGAGTTCATCTCGTTTCCTGGCAAACTTTCTTGATGTGATGATAGGCGGTGCTTTGGCATTATCTCTCCATGAAACACCATCTCAGAGGATCCAGGCAACTGAAATTTGTCAAGGGGGCACTGTGATGACTCCCGGTGGAAGTGGAGGCTCAGGAAGGGTGTGGCTAGGAACACTTGGGAG]

[+] EMBL CA759079             [TTTTTTTTTTTTTTTTTCAGCCTTAAAAAGTTTTAGTAGACAACTATTTTCTGGGAATCTCTGATCCTTCACAGGAGGGCTACTAGATGCTTAAACCAGTACAAAGAGGACTTTGCTCGGGCTGCTTTTCACTAAACATTTCGTAAATAATTACATGGCCTCATGATCTCATCTATATGCTAGTTTTCGAAGGGACTTCATTAAAACGATTACAATTACATGCTAGTTTTGGGAAGCATTCAGGTCGCTTCAAGAATAATAGCACTATTGATAGAGGTAAGCAATTCTGAAAGTCTGCCTGTCTGTTAAACTACTGAGCTAGGTCACGTCATCCTTCTTTCGCACCTGATTTCGATGCCACCAGCAACCACGTCCTAAGCTATGCATGTCTTGTACTTTTTGGAACCATATCCAATGATTGCTCTTTGCTAAGGGAGACACCATCAAAATTATTGGTGTTCAACATGGATGATTCTTTCCTGAGGGAGTTCATCTCGTTTCCTGGCAAACTTTCTTGATGTGATGATAGGCGGTGCTTTGGCATTATCTCTCCATGAAACACCATCTCAGAGGATCCAGGCAACTGAAATTTGTCAAGGGGGCACTGTGATGACTCCCGGTGGAAGTGGAGGCTCAGGAAGGGTGTGGCTAGGAACACTTGGGAG]




>consensus_830#0
TTTTTTTTTTTTTTTTTCAGCCTTAAAAAGTTTTAGTAGACAACTATTTTCTGGGAATCT
CTGATCCTTCACAGGAGGGCTACTAGATGCTTAAACCAGTACAAAGAGGACTTTGCTCGG
GCTGCTTTTCACTAAACATTTCGTAAATAATTACATGGCCTCATGATCTCATCTATATGC
TAGTTTTCGAAGGGACTTCATTAAAACGATTACAATTACATGCTAGTTTTGGGAAGCATT
CAGGTCGCTTCAAGAATAATAGCACTATTGATAGAGGTAAGCAATTCTGAAAGTCTGCCT
GTCTGTTAAACTACTGAGCTAGGTCACGTCATCCTTCTTTCGCACCTGATTTCGATGCCA
CCAGCAACCACGTCCTAAGCTATGCATGTCTTGTACTTTTTGGAACCATATCCAATGATT
GCTCTTTGCTAAGGGAGACACCATCAAAATTATTGGTGTTCAACATGGATGATTCTTTCC
TGAGGGAGTTCATCTCGTTTCCTGGCAAACTTTCTTGATGTGATGATAGGCGGTGCTTTG
GCATTATCTCTCCATGAAACACCATCTCAGAGGATCCAGGCAACTGAAATTTGTCAAGGG
GGCACTGTGATGACTCCCGGTGGAAGTGGAGGCTCAGGAAGGGTGTGGCTAGGAACACTT
GGGAG

consensusID : consensus_830#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 281
fasta sequence

                              [GGGACCACGAAGATTTCTTCAGTCTTAAAAAGTTTCAGTAGACGACTATATTCTGTGAATCTCTGATCCTTCACAGGAGTNCTACTAGATGCTTAGACCAGTACAAAGAGGACTTTGCTCGTGCTGCTCTTCACTAAACATTTCGTAGATGATTACATGGTCTCATGATCTCATCTATATGCTAGTTTTCGAATGGNCTTCATTAAAACGATTACGNTTACATGCTAGTTTTGTGANGCATTCAAGGTCGCTTCAAGAATAATAGCACTATTGATAGCGGT]

[+] EMBL D43106               [GGGACCACGAAGATTTCTTCAGTCTTAAAAAGTTTCAGTAGACGACTATATTCTGTGAATCTCTGATCCTTCACAGGAGTNCTACTAGATGCTTAGACCAGTACAAAGAGGACTTTGCTCGTGCTGCTCTTCACTAAACATTTCGTAGATGATTACATGGTCTCATGATCTCATCTATATGCTAGTTTTCGAATGGNCTTCATTAAAACGATTACGNTTACATGCTAGTTTTGTGANGCATTCAAGGTCGCTTCAAGAATAATAGCACTATTGATAGCGGT]




>consensus_830#1
GGGACCACGAAGATTTCTTCAGTCTTAAAAAGTTTCAGTAGACGACTATATTCTGTGAAT
CTCTGATCCTTCACAGGAGTNCTACTAGATGCTTAGACCAGTACAAAGAGGACTTTGCTC
GTGCTGCTCTTCACTAAACATTTCGTAGATGATTACATGGTCTCATGATCTCATCTATAT
GCTAGTTTTCGAATGGNCTTCATTAAAACGATTACGNTTACATGCTAGTTTTGTGANGCA
TTCAAGGTCGCTTCAAGAATAATAGCACTATTGATAGCGGT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_830#0      --TTTTTTTTTTTTTTTTTCAGCCTTAAAAAGTTTTAGTAGACAACTATTTTCTGGGAAT 58
consensus_830#1      GGGACCACGAAGATTTCTTCAGTCTTAAAAAGTTTCAGTAGACGACTATATTCTGTGAAT 60
                                  *** ***** ************ ******* ***** ***** ****

consensus_830#0      CTCTGATCCTTCACAGGAGGGCTACTAGATGCTTAAACCAGTACAAAGAGGACTTTGCTC 118
consensus_830#1      CTCTGATCCTTCACAGGAGTNCTACTAGATGCTTAGACCAGTACAAAGAGGACTTTGCTC 120
                     *******************  ************** ************************

consensus_830#0      GGGCTGCTTTTCACTAAACATTTCGTAAATAATTACATGGCCTCATGATCTCATCTATAT 178
consensus_830#1      GTGCTGCTCTTCACTAAACATTTCGTAGATGATTACATGGTCTCATGATCTCATCTATAT 180
                     * ****** ****************** ** ********* *******************

consensus_830#0      GCTAGTTTTCGAAGGGACTTCATTAAAACGATTACAATTACATGCTAGTTTTGGGAAGCA 238
consensus_830#1      GCTAGTTTTCGAATGGNCTTCATTAAAACGATTACGNTTACATGCTAGTTTTGTGANGCA 240
                     ************* ** ******************  **************** ** ***

consensus_830#0      TTCA-GGTCGCTTCAAGAATAATAGCACTATTGATAGAGGTAAGCAATTCTGAAAGTCTG 297
consensus_830#1      TTCAAGGTCGCTTCAAGAATAATAGCACTATTGATAGCGGT------------------- 281
                     **** ******************************** ***                   

consensus_830#0      CCTGTCTGTTAAACTACTGAGCTAGGTCACGTCATCCTTCTTTCGCACCTGATTTCGATG 357
consensus_830#1      ------------------------------------------------------------
                                                                                 

consensus_830#0      CCACCAGCAACCACGTCCTAAGCTATGCATGTCTTGTACTTTTTGGAACCATATCCAATG 417
consensus_830#1      ------------------------------------------------------------
                                                                                 

consensus_830#0      ATTGCTCTTTGCTAAGGGAGACACCATCAAAATTATTGGTGTTCAACATGGATGATTCTT 477
consensus_830#1      ------------------------------------------------------------
                                                                                 

consensus_830#0      TCCTGAGGGAGTTCATCTCGTTTCCTGGCAAACTTTCTTGATGTGATGATAGGCGGTGCT 537
consensus_830#1      ------------------------------------------------------------
                                                                                 

consensus_830#0      TTGGCATTATCTCTCCATGAAACACCATCTCAGAGGATCCAGGCAACTGAAATTTGTCAA 597
consensus_830#1      ------------------------------------------------------------
                                                                                 

consensus_830#0      GGGGGCACTGTGATGACTCCCGGTGGAAGTGGAGGCTCAGGAAGGGTGTGGCTAGGAACA 657
consensus_830#1      ------------------------------------------------------------
                                                                                 

consensus_830#0      CTTGGGAG 665
consensus_830#1      --------