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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8303#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 2268 fasta sequence
[GTACCGGATTATCCTAATCGCGTTTACTAAACTCCGCTAAAATCTCTTGTATTCCCACAAAATTTCCCCAAAATTTTTTACTAAAACTTTTTTCTCAAGATAGAAAAAACTATATATCCTTTTGGTTTGCAAAGGTTTTACTAGGTTATTTGCCCCCCTCTTCTAGAACGCATCCAGAATTCGTGGACTCTGCGACCCAACTCACACGGCGAAGCACACAGAATTTTTTTTCCCAAATCCATTTATTTTCCTCTCTTCTCTCTCTCGAATCGAATCGAATCGCCTCGCCTCCTTTGTTGAATTGAATCCAAGCTCGATTCGCCGCCGCCGCACGCCGCCATGGGCAACTGCTGCGGCACGCCGGCGACGGCGGAGGAGGGCGGGAAGAGGAGGAGGAGGGGGAAGCAGAAGAAGGCGAACCCCTTCACCGTCGCGTACAACCGCGCGCCGTCGTCGGCGGGGGCGGCGGCGGGGAGGCCCGGGCTGATGGTGCTGCGGGACCCGACGGGGCGGGACCTCGGCGCGCGGTACGAGCTCGGCGGCGAGCTGGGGCGCGGCGAGTTCGGGATCACGTACCTGTGCACGGAGGCGGAGACGGGGGACAGGTACGCGTGCAAGTCGATATCGAAGCGGAAGCTGCGGACGCCGGTGGACGTGGAGGACGTGCGGCGCGAGGTGGAGATCATGCGCCACATGCCGTCGCATCCGAACATCGTCAGCCTCCGCGCCGCCTACGAGGACGAGGACAACGTGCACCTCGTCATGGAGCTCTGCGAGGGCGGCGAGCTCTTCGACAGGATCGTCGCGCGGGGCCACTACACCGAGCGCGCCGCCGCCGCCGTCACGCGCACCATCGTCGAGGTGGTTCAGATGTGCCACAGGCATGGTGTCATGCACCGCGACCTTAAACCAGAAAACTTCCTATATGCTAACAAGAAGGATAGTTCTCCTCTGAAGGCAATTGATTTTGGGCTATCTGTGTTCTTCAGGCCTGGTGAGCGGTTCACTGAAATTGTAGGCAGTCCATATTACATGGCTCCAGAGGTTTTAAAGCGACACTATGGCCCTGAAGTTGATGTCTGGAGTGCAGGAGTGATACTTTACATACTTCTTTGCGGTGTACCACCATTTTGGGCAGAAACCGAGCAGGGAGTAGCGCAGGCAATTATACGCTCTGTGGTAGATTTCAAAAGAGAACCATGGCCCAGGGTATCTGAGCCAGCTAAAGATCTTGTTAAGCGGATGTTGGACCCAAATCCCATGACAAGGCTTACTGCAGAACAAGTACTTGAACATCCATGGTTACATGATTCTAAAAAGATGCCTGACATTCCTCTTGGTGATGCTGTCCGAGCTAGACTGCAGCAATTTGCTGCGATGAACAAGTTAAAGAAGAAAGCCCTTAAGGTCATTGCTGAGCATTTGTCTGCAGAGGAAGCAGCTGACATAAAGGACATGTTTGATAAAATGGATGTGAGCAAGAATGGCCAGCTGACCTTTGAGGATTTCAAGGCTGGCATACGTAAACTTGGGAATCAGATGCCTGATTCAGATCTTAAGATATTGATGGATGCTGCTGATATTGACAAAAATGGGATCCTGGACTATCAAGAATTTGTTGCTGTGTCTATCCATGTGAGGAAAATAGGCAATGATGAACATATCCAGAAGGCTTTCTCATATTTTGACCAAAATAAGAGTGGTTACATAGAAATTGAAGAGCTTAGAGAGGCCTTGGTTGATGAAATAGATGGCAATGATGAAGACATTATTAATAGCATCATCCGTGATGTAGATACAGACAAGGATGGGAAAATAAGCTACGACGAGTTTGCCGTCATGATGAAGGCCGGCACTGACTGGAGGAAGGCATCTAGGCAGTACTCAAGACAAAGGTTCAGTAACCTCAGTCTGAAGCTTCAAAAGGACGGATCCATCAGTGACGACACGCAATAGACTGGACAGAGAAAAAAACTACGCTTACGTTTTTTCTTTGCTGTGTGCTGGCTGTTACATTATTTTTTCACACAGTAACTTAGTGGCTTTGTATAGATAGCATTTGTGGTTTTGTGCTTACCAGCAGCGATTATATTTGTCAGTCAGGCGGCAGATATGTATGTACCCAAAAGAGGGCGGGATGGGGAAGCAGATGGTGTGCTTACAGTTTACTAGACCAGAATTATTGGTACAATTGTTTGTAGTTTTGTACGTACCATAATACAAGCGGCGTGAAATTCTCAACTCGTTCATCCTGTTGTCATCCAAAAA]
[+] EMBL AK066615 [GTACCGGATTATCCTAATCGCGTTTACTAAACTCCGCTAAAATCTCTTGTATTCCCACAAAATTTCCCCAAAATTTTTTACTAAAACTTTTTTCTCAAGATAGAAAAAACTATATATCCTTTTGGTTTGCAAAGGTTTTACTAGGTTATTTGCCCCCCTCTTCTAGAACGCATCCAGAATTCGTGGACTCTGCGACCCAACTCACACGGCGAAGCACACAGAATTTTTTTTCCCAAATCCATTTATTTTCCTCTCTTCTCTCTCTCGAATCGAATCGAATCGCCTCGCCTCCTTTGTTGAATTGAATCCAAGCTCGATTCGCCGCCGCCGCACGCCGCCATGGGCAACTGCTGCGGCACGCCGGCGACGGCGGAGGAGGGCGGGAAGAGGAGGAGGAGGGGGAAGCAGAAGAAGGCGAACCCCTTCACCGTCGCGTACAACCGCGCGCCGTCGTCGGCGGGGGCGGCGGCGGGGAGGCCCGGGCTGATGGTGCTGCGGGACCCGACGGGGCGGGACCTCGGCGCGCGGTACGAGCTCGGCGGCGAGCTGGGGCGCGGCGAGTTCGGGATCACGTACCTGTGCACGGAGGCGGAGACGGGGGACAGGTACGCGTGCAAGTCGATATCGAAGCGGAAGCTGCGGACGCCGGTGGACGTGGAGGACGTGCGGCGCGAGGTGGAGATCATGCGCCACATGCCGTCGCATCCGAACATCGTCAGCCTCCGCGCCGCCTACGAGGACGAGGACAACGTGCACCTCGTCATGGAGCTCTGCGAGGGCGGCGAGCTCTTCGACAGGATCGTCGCGCGGGGCCACTACACCGAGCGCGCCGCCGCCGCCGTCACGCGCACCATCGTCGAGGTGGTTCAGATGTGCCACAGGCATGGTGTCATGCACCGCGACCTTAAACCAGAAAACTTCCTATATGCTAACAAGAAGGATAGTTCTCCTCTGAAGGCAATTGATTTTGGGCTATCTGTGTTCTTCAGGCCTGGTGAGCGGTTCACTGAAATTGTAGGCAGTCCATATTACATGGCTCCAGAGGTTTTAAAGCGACACTATGGCCCTGAAGTTGATGTCTGGAGTGCAGGAGTGATACTTTACATACTTCTTTGCGGTGTACCACCATTTTGGGCAGAAACCGAGCAGGGAGTAGCGCAGGCAATTATACGCTCTGTGGTAGATTTCAAAAGAGAACCATGGCCCAGGGTATCTGAGCCAGCTAAAGATCTTGTTAAGCGGATGTTGGACCCAAATCCCATGACAAGGCTTACTGCAGAACAAGTACTTGAACATCCATGGTTACATGATTCTAAAAAGATGCCTGACATTCCTCTTGGTGATGCTGTCCGAGCTAGACTGCAGCAATTTGCTGCGATGAACAAGTTAAAGAAGAAAGCCCTTAAGGTCATTGCTGAGCATTTGTCTGCAGAGGAAGCAGCTGACATAAAGGACATGTTTGATAAAATGGATGTGAGCAAGAATGGCCAGCTGACCTTTGAGGATTTCAAGGCTGGCATACGTAAACTTGGGAATCAGATGCCTGATTCAGATCTTAAGATATTGATGGATGCTGCTGATATTGACAAAAATGGGATCCTGGACTATCAAGAATTTGTTGCTGTGTCTATCCATGTGAGGAAAATAGGCAATGATGAACATATCCAGAAGGCTTTCTCATATTTTGACCAAAATAAGAGTGGTTACATAGAAATTGAAGAGCTTAGAGAGGCCTTGGTTGATGAAATAGATGGCAATGATGAAGACATTATTAATAGCATCATCCGTGATGTAGATACAGACAAGGATGGGAAAATAAGCTACGACGAGTTTGCCGTCATGATGAAGGCCGGCACTGACTGGAGGAAGGCATCTAGGCAGTACTCAAGACAAAGGTTCAGTAACCTCAGTCTGAAGCTTCAAAAGGACGGATCCATCAGTGACGACACGCAATAGACTGGACAGAGAAAAAAACTACGCTTACGTTTTTTCTTTGCTGTGTGCTGGCTGTTACATTATTTTTTCACACAGTAACTTAGTGGCTTTGTATAGATAGCATTTGTGGTTTTGTGCTTACCAGCAGCGATTATATTTGTCAGTCAGGCGGCAGATATGTATGTACCCAAAAGAGGGCGGGATGGGGAAGCAGATGGTGTGCTTACAGTTTACTAGACCAGAATTATTGGTACAATTGTTTGTAGTTTTGTACGTACCATAATACAAGCGGCGTGAA ]
[+] EMBL CB630153 [ TTTCCATATCCATTTATTTTCCTCTCTTCTCTCTCTCGAATCGAATCGAATCGCCTCGCCTCCTTTGTTGAATTGAATCCAAGCTCGATTCGCCGCCGCCGCACGCCGCCATGGGCAACTGCTGCGGCACGCCGGCGACGGCGGAGGAGGGCGGGAAGAGGAGGAGGAGGGGGAAGCAGAAGAAGGCGAACCCCTTCACCGTCGCGTACAACCGCGCGCCGTCGTCGGCGGGGGCGGCGGCGGGGAGGCCCGGGCTGATGGTGCTGCGGGACCCGACGGGGCGGGACCTCGGCGCGCGGTACGAGCTCGGCGGCGAGCTGGGGCGCGGCGAGTTCGGGATCACGTACCTGTGCACGGAGGCGGAGACGGGGGACAGGTACGCGTGCAAGTCGATATCGAAGCGGAAGCTGCGGACGCCGGTGGACGTGGAGGACGTGCGGCGCGAGGTGGAGATCATGCGCCACATGCCGTCGCATCCGAACATCGTCAGCCTCCGCGCCGCCTACGAGGACGAGGACAACGTGCACCTCGTCATGGAGCTCTGCGAGGGCGGCGAGCTCTTCGACAGGATCGTCGCGCGGGGCCACTACACCGAGCGTGCCGCCGCCGCCGTCACGCGCACCATCGTCGAGGTGGTTCAGATGTGCCACAGGCATGGTGTCATGCACCGCGACCTTAAACCAGAAAACTTCCTATATGCTAACAAGAAGGATAGTTCTCCTCTGAAGGCAATTGATTTTGGGCTATCTGTGTTCTTCAGGCCTGGTGAG ]
[+] EMBL C22659 [ cgagGGGATCACGTACCTGTGCACGGAGGCGGAGACNGGGGACAGGTACGCGTGCAAGTCGATATCGAAGCGGAAGCNGCGGACNCCGGTGGACGTGGAGGACGTNCGGCGCGAGGTGGAGATCATNCGCCACATNCCGTCGCATCCGAACATCGTCAGCCTCCGCGCCGCCTACAANGACGAGGACAACGTGCACCTCGTC ]
[+] EMBL BQ907356 [ TACAGACNAGGATGGGAAAATAAGCTACGACGAGTTTGCCGTCATGATGAAGGCCGGCACTGACTGGAGGAAGGCATCTAGGCAGTACTCAAGACCAAGGTTCAGTAACCTCAGTCTGAAGCTTCNAAAGGACGGATCCATCAGTGACGACACGCAATAGACTGGACAGAGAAAAAAACTACGCTTACGTTTTTTCTTTGCTGTGTGCTGGCTGTTACATTATTTTTTCACACAGTAACTTAGTGGCTTTGTATAGATAGCATTTGTGGTTTTGTGCTTACCAGCAGCGATTATATTTGTCAGTCAGGCGGCAGATATGTATGTACCCCAAAGAGGGCGGGATGGGGAAGCAGATGGTGTGCTTACAGTTTACTAGACCAGAATTATTGGTAC ATTGTTTGTAGTTTTGTACGTACCATAATACAAGCGGCGTGAAATTCTCAACTCGTTCATCCTGTTGTCATCCAAAAA]
consensusID : consensus_8303#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 366 fasta sequence
[AAAGGTTCNGTAACCTCAGTCTGAAGCTTCAAAAGGACGGATCCATCCGTGACGACACGCNATAGNCTGGACAGAGAAAAAAACTACGCTTACGTTTTTNCTTTGCTGTGTGNTGGCTGTTACATTATTTTTTCACACAGTAACTTAGTGGCTTTGTATAGATAGCATTTGTGGTTTTGTGCTTACCNGCNGCGATTATATTTGTCAGTCAGGCGGCNGATATGTATGTACCCAAAAGAGGGCGGGATGGGGAAGCAGATGGTGTGCTTACNGTTTACTAGACCAGAATTATTGGTACAATTGTTTGTNGTTTTGTACGTACCATAATACAAGCGGNGTGAAATTCTCAACTCGTTAAAAAAAAAA]
[+] EMBL C22658 [AAAGGTTCNGTAACCTCAGTCTGAAGCTTCAAAAGGACGGATCCATCCGTGACGACACGCNATAGNCTGGACAGAGAAAAAAACTACGCTTACGTTTTTNCTTTGCTGTGTGNTGGCTGTTACATTATTTTTTCACACAGTAACTTAGTGGCTTTGTATAGATAGCATTTGTGGTTTTGTGCTTACCNGCNGCGATTATATTTGTCAGTCAGGCGGCNGATATGTATGTACCCAAAAGAGGGCGGGATGGGGAAGCAGATGGTGTGCTTACNGTTTACTAGACCAGAATTATTGGTACAATTGTTTGTNGTTTTGTACGTACCATAATACAAGCGGNGTGAAATTCTCAACTCGTTAAAAAAAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_8303#0 GTACCGGATTATCCTAATCGCGTTTACTAAACTCCGCTAAAATCTCTTGTATTCCCACAA 60
consensus_8303#1 ------------------------------------------------------------
consensus_8303#0 AATTTCCCCAAAATTTTTTACTAAAACTTTTTTCTCAAGATAGAAAAAACTATATATCCT 120
consensus_8303#1 ------------------------------------------------------------
consensus_8303#0 TTTGGTTTGCAAAGGTTTTACTAGGTTATTTGCCCCCCTCTTCTAGAACGCATCCAGAAT 180
consensus_8303#1 ------------------------------------------------------------
consensus_8303#0 TCGTGGACTCTGCGACCCAACTCACACGGCGAAGCACACAGAATTTTTTTTCCCAAATCC 240
consensus_8303#1 ------------------------------------------------------------
consensus_8303#0 ATTTATTTTCCTCTCTTCTCTCTCTCGAATCGAATCGAATCGCCTCGCCTCCTTTGTTGA 300
consensus_8303#1 ------------------------------------------------------------
consensus_8303#0 ATTGAATCCAAGCTCGATTCGCCGCCGCCGCACGCCGCCATGGGCAACTGCTGCGGCACG 360
consensus_8303#1 ------------------------------------------------------------
consensus_8303#0 CCGGCGACGGCGGAGGAGGGCGGGAAGAGGAGGAGGAGGGGGAAGCAGAAGAAGGCGAAC 420
consensus_8303#1 ------------------------------------------------------------
consensus_8303#0 CCCTTCACCGTCGCGTACAACCGCGCGCCGTCGTCGGCGGGGGCGGCGGCGGGGAGGCCC 480
consensus_8303#1 ------------------------------------------------------------
consensus_8303#0 GGGCTGATGGTGCTGCGGGACCCGACGGGGCGGGACCTCGGCGCGCGGTACGAGCTCGGC 540
consensus_8303#1 ------------------------------------------------------------
consensus_8303#0 GGCGAGCTGGGGCGCGGCGAGTTCGGGATCACGTACCTGTGCACGGAGGCGGAGACGGGG 600
consensus_8303#1 ------------------------------------------------------------
consensus_8303#0 GACAGGTACGCGTGCAAGTCGATATCGAAGCGGAAGCTGCGGACGCCGGTGGACGTGGAG 660
consensus_8303#1 ------------------------------------------------------------
consensus_8303#0 GACGTGCGGCGCGAGGTGGAGATCATGCGCCACATGCCGTCGCATCCGAACATCGTCAGC 720
consensus_8303#1 ------------------------------------------------------------
consensus_8303#0 CTCCGCGCCGCCTACGAGGACGAGGACAACGTGCACCTCGTCATGGAGCTCTGCGAGGGC 780
consensus_8303#1 ------------------------------------------------------------
consensus_8303#0 GGCGAGCTCTTCGACAGGATCGTCGCGCGGGGCCACTACACCGAGCGCGCCGCCGCCGCC 840
consensus_8303#1 ------------------------------------------------------------
consensus_8303#0 GTCACGCGCACCATCGTCGAGGTGGTTCAGATGTGCCACAGGCATGGTGTCATGCACCGC 900
consensus_8303#1 ------------------------------------------------------------
consensus_8303#0 GACCTTAAACCAGAAAACTTCCTATATGCTAACAAGAAGGATAGTTCTCCTCTGAAGGCA 960
consensus_8303#1 ------------------------------------------------------------
consensus_8303#0 ATTGATTTTGGGCTATCTGTGTTCTTCAGGCCTGGTGAGCGGTTCACTGAAATTGTAGGC 1020
consensus_8303#1 ------------------------------------------------------------
consensus_8303#0 AGTCCATATTACATGGCTCCAGAGGTTTTAAAGCGACACTATGGCCCTGAAGTTGATGTC 1080
consensus_8303#1 ------------------------------------------------------------
consensus_8303#0 TGGAGTGCAGGAGTGATACTTTACATACTTCTTTGCGGTGTACCACCATTTTGGGCAGAA 1140
consensus_8303#1 ------------------------------------------------------------
consensus_8303#0 ACCGAGCAGGGAGTAGCGCAGGCAATTATACGCTCTGTGGTAGATTTCAAAAGAGAACCA 1200
consensus_8303#1 ------------------------------------------------------------
consensus_8303#0 TGGCCCAGGGTATCTGAGCCAGCTAAAGATCTTGTTAAGCGGATGTTGGACCCAAATCCC 1260
consensus_8303#1 ------------------------------------------------------------
consensus_8303#0 ATGACAAGGCTTACTGCAGAACAAGTACTTGAACATCCATGGTTACATGATTCTAAAAAG 1320
consensus_8303#1 ------------------------------------------------------------
consensus_8303#0 ATGCCTGACATTCCTCTTGGTGATGCTGTCCGAGCTAGACTGCAGCAATTTGCTGCGATG 1380
consensus_8303#1 ------------------------------------------------------------
consensus_8303#0 AACAAGTTAAAGAAGAAAGCCCTTAAGGTCATTGCTGAGCATTTGTCTGCAGAGGAAGCA 1440
consensus_8303#1 ------------------------------------------------------------
consensus_8303#0 GCTGACATAAAGGACATGTTTGATAAAATGGATGTGAGCAAGAATGGCCAGCTGACCTTT 1500
consensus_8303#1 ------------------------------------------------------------
consensus_8303#0 GAGGATTTCAAGGCTGGCATACGTAAACTTGGGAATCAGATGCCTGATTCAGATCTTAAG 1560
consensus_8303#1 ------------------------------------------------------------
consensus_8303#0 ATATTGATGGATGCTGCTGATATTGACAAAAATGGGATCCTGGACTATCAAGAATTTGTT 1620
consensus_8303#1 ------------------------------------------------------------
consensus_8303#0 GCTGTGTCTATCCATGTGAGGAAAATAGGCAATGATGAACATATCCAGAAGGCTTTCTCA 1680
consensus_8303#1 ------------------------------------------------------------
consensus_8303#0 TATTTTGACCAAAATAAGAGTGGTTACATAGAAATTGAAGAGCTTAGAGAGGCCTTGGTT 1740
consensus_8303#1 ------------------------------------------------------------
consensus_8303#0 GATGAAATAGATGGCAATGATGAAGACATTATTAATAGCATCATCCGTGATGTAGATACA 1800
consensus_8303#1 ------------------------------------------------------------
consensus_8303#0 GACAAGGATGGGAAAATAAGCTACGACGAGTTTGCCGTCATGATGAAGGCCGGCACTGAC 1860
consensus_8303#1 ------------------------------------------------------------
consensus_8303#0 TGGAGGAAGGCATCTAGGCAGTACTCAAGACAAAGGTTCAGTAACCTCAGTCTGAAGCTT 1920
consensus_8303#1 -------------------------------AAAGGTTCNGTAACCTCAGTCTGAAGCTT 29
******** ********************
consensus_8303#0 CAAAAGGACGGATCCATCAGTGACGACACGCAATAGACTGGACAGAGAAAAAAACTACGC 1980
consensus_8303#1 CAAAAGGACGGATCCATCCGTGACGACACGCNATAGNCTGGACAGAGAAAAAAACTACGC 89
****************** ************ **** ***********************
consensus_8303#0 TTACGTTTTTTCTTTGCTGTGTGCTGGCTGTTACATTATTTTTTCACACAGTAACTTAGT 2040
consensus_8303#1 TTACGTTTTTNCTTTGCTGTGTGNTGGCTGTTACATTATTTTTTCACACAGTAACTTAGT 149
********** ************ ************************************
consensus_8303#0 GGCTTTGTATAGATAGCATTTGTGGTTTTGTGCTTACCAGCAGCGATTATATTTGTCAGT 2100
consensus_8303#1 GGCTTTGTATAGATAGCATTTGTGGTTTTGTGCTTACCNGCNGCGATTATATTTGTCAGT 209
************************************** ** ******************
consensus_8303#0 CAGGCGGCAGATATGTATGTACCCAAAAGAGGGCGGGATGGGGAAGCAGATGGTGTGCTT 2160
consensus_8303#1 CAGGCGGCNGATATGTATGTACCCAAAAGAGGGCGGGATGGGGAAGCAGATGGTGTGCTT 269
******** ***************************************************
consensus_8303#0 ACAGTTTACTAGACCAGAATTATTGGTACAATTGTTTGTAGTTTTGTACGTACCATAATA 2220
consensus_8303#1 ACNGTTTACTAGACCAGAATTATTGGTACAATTGTTTGTNGTTTTGTACGTACCATAATA 329
** ************************************ ********************
consensus_8303#0 CAAGCGGCGTGAAATTCTCAACTCGTTCATCCTGTTGTCATCCAAAAA 2268
consensus_8303#1 CAAGCGGNGTGAAATTCTCAACTCGTTAAAAAAAAAA----------- 366
******* ******************* *
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||