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Oryza sativa
cluster # 8310 cluster # 8310       Sequences # 5       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_8310#0 length = 1299 sequences # 3  
consensus_8310#1 length = 686 sequences # 2  

consensusID : consensus_8310#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 1299
fasta sequence
                              [ATCAATTCAAGGAAGTGGTGTCATAAATGGTAGGGGGCAAGAATGGTGGACCTATTCAGATCCAAATGACGACGACAATGATGATGTTGATGCTTACAATGTGGAGCTGGAGAAGATGCCACAGATTAAACCTACAGCATTGAGGTTTTATGGTAGTTCCAATGTCACAGTAACTGGTATCACCATTGTTAACAGCTCACAGTGCCATCTCAAGTTTGATAGCTGTCAAGGAGTAATGGTTCATGACCTGACCATCTCATCGCCTGAGAACAGTCCCAACACTGATGGAATACACCTGCAAAATTCCAAACAAGTCAGCATTCACCACTCTAACCTCGCTTGCGGCGATGATTGTGTTTCCATCCAGACAGGCTGCAGTGACATAAACATACATAATGTGAACTGTGGACCAGGGCATGGGATCAGCATTGGTGGTCTAGGAAGGTACAACACAAAAGCATGTGTATCCAATGTCACCGTAAGAGATGTCAACATGTTCAAAACAATGACTGGTGTCAGAATCAAAACTTGGCAGGGAGGTTCAGGGTTGGTTCAAGGCATAAGGTTCTCAAACATACAAGTGTCAGAAGTTCAAACACCTATCATAATAGACCAATTTTACTGTGACAGAACAACTTGCAGAAACCAAACATCAGCAGTGGCGGTTTTA-GGTGTTCAGTACGAGAATATCAGGGGGACCTTCACAATCAAGCCTGCCCATTTTGCATGCAGTGATAGCTCGCCTTGTTCAGAGATCACTCTTACTGGAATACAGCTCAAACCCCTGATAGTGCCACAGTATCACCTGTACAACCCATTCTGCTGGCAAGCCTTTGGAGAGTTGTCCACCCCCACCATCCCTCCCATATCCTGCTTGCAGATCGGCAAA-CCATCTGGGAACAACGTGATGTCAGATTATGATCTATGTTGAAACTCTCTGAATGAGTGGAAATGCTGTGATCCAGGAAATACTATACTCCTGGTCCTCATTGGTTAGGGTGGTCGTCGTGATTCTTCCGACCCCCTTTCTGCACAATCATCGTGTGGTGT-ATATATATACAGTTTATGCAAGGATAGTATATGGTTATCAGGACATGTACCAGCTTCCCTCTTGAAGTGAAATGTAGGAATTTGATAATGTAAGGGATAGTGTTCATGCATTGTTCTAGATGCATCATGCATACATACGAGGTAGTACTAGTCACTCTGCTATCAATTTCGGTAATGAAATGGGACCATTCCTCTCTTTCTCAAAAAAAAAGTACTATTAAGATGGATGAAACAGAAAAAAAAAAAAAA]

[+] EMBL AK108477             [ATCAATTCAAGGAAGTGGTGTCATAAATGGTAGGGGGCAAGAATGGTGGACCTATTCAGATCCAAATGACGACGACAATGATGATGTTGATGCTTACAATGTGGAGCTGGAGAAGATGCCACAGATTAAACCTACAGCATTGAGGTTTTATGGTAGTTCCAATGTCACAGTAACTGGTATCACCATTGTTAACAGCTCACAGTGCCATCTCAAGTTTGATAGCTGTCAAGGAGTAATGGTTCATGACCTGACCATCTCATCGCCTGAGAACAGTCCCAACACTGATGGAATACACCTGCAAAATTCCAAACAAGTCAGCATTCACCACTCTAACCTCGCTTGCGGCGATGATTGTGTTTCCATCCAGACAGGCTGCAGTGACATAAACATACATAATGTGAACTGTGGACCAGGGCATGGGATCAGCATTGGTGGTCTAGGAAGGTACAACACAAAAGCATGTGTATCCAATGTCACCGTAAGAGATGTCAACATGTTCAAAACAATGACTGGTGTCAGAATCAAAACTTGGCAGGGAGGTTCAGGGTTGGTTCAAGGCATAAGGTTCTCAAACATACAAGTGTCAGAAGTTCAAACACCTATCATAATAGACCAATTTTACTGTGACAGAACAACTTGCAGAAACCAAACATCAGCAGTGGCGGTTTTA GGTGTTCAGTACGAGAATATCAGGGGGACCTTCACAATCAAGCCTGCCCATTTTGCATGCAGTGATAGCTCGCCTTGTTCAGAGATCACTCTTACTGGAATACAGCTCAAACCCCTGATAGTGCCACAGTATCACCTGTACAACCCATTCTGCTGGCAAGCCTTTGGAGAGTTGTCCACCCCCACCATCCCTCCCATATCCTGCTTGCAGATCGGCAAA CCATCTGGGAACAACGTGATGTCAGATTATGATCTATGTTGAAACTCTCTGAATGAGTGGAAATGCTGTGATCCAGGAAATACTATACTCCTGGTCCTCATTGGTTAGGGTGGTCGTCGTGATTCTTCCGACCCCCTTTCTGCACAATCATCGTGTGGTGT ATATATATACAGTTTATGCAAGGATAGTATATGGTTATCAGGACATGTACCAGCTTCCCTCTTGAAGTGAAATGTA                                                                                                                                                                             ]
[+] EMBL OSS14229A            [                                                                                                                                                                                                                                                                                                                                            ACCTCGCTTG GGCGATGATTGTGTTTCCATCCAGACAGGCTGCAGTGACATAAACATACATAATGTGAACTGTGGACCAGGGCATGGGATCAGCATTGGTGGTCTAGGAAGGTACAACACAAAAGCATGTGTATCCAATGTCACCGTAAGAGATGTCAACATGTTCAAAACAATGACTGGTGTCAGAATCAAAACTTGGCAGGGAGGTTCAGGGTTGGTTCAAGGCATAAGGTTCTCAAACATACAAGTGTCAGAAGTTCAAACACCTATCATAATAGACCAATTTTACTGTGACAGAACAACTTGCAGAAACCAAACATCAGCAGTGGCGGTTTTAGGGTGTTCAGTACGAGAATATCAGGGGG NCTTCACAATCAAG CTGCCCATTTTGCATGCAGTGATAGCTCGCCTTGTTCAGAGATCA TTTTACTNGGATACAG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              ]
[+] EMBL AU096556             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        CATCCCTCCCATATCCTGCTTGCAGATCGGCAAANCCATCTGGGAACAACGTGATGTCAGATTATGATCTATGTTGAAACTCTCTGAATGAGTGGAAATGCTGTGATCCAGGAAATACTATACTCCTGGTCCTCATTGGTTAGGGTGGTCGTCGTGATTCTTCCGACCCCCTTTCTGCACAATCATCGTGTGGTGTNATATATATACAGTTTATGCAAGGATAGTATATGGTTATCAGGACATGTACCAGCTTCCCTCTTGAAGTGAAATGTAGGAATTTGATAATGTAAGGGATAGTGTTCATGCATTGTTCTAGATGCATCATGCATACATACGAGGTAGTACTAGTCACTCTGCTATCAATTTCGGTAATGAAATGGGACCATTCCTCTCTTTCTCAAAAAAAAAGTACTATTAAGATGGATGAAACAGAAAAAAAAAAAAAA]


>consensus_8310#0 ATCAATTCAAGGAAGTGGTGTCATAAATGGTAGGGGGCAAGAATGGTGGACCTATTCAGA TCCAAATGACGACGACAATGATGATGTTGATGCTTACAATGTGGAGCTGGAGAAGATGCC ACAGATTAAACCTACAGCATTGAGGTTTTATGGTAGTTCCAATGTCACAGTAACTGGTAT CACCATTGTTAACAGCTCACAGTGCCATCTCAAGTTTGATAGCTGTCAAGGAGTAATGGT TCATGACCTGACCATCTCATCGCCTGAGAACAGTCCCAACACTGATGGAATACACCTGCA AAATTCCAAACAAGTCAGCATTCACCACTCTAACCTCGCTTGCGGCGATGATTGTGTTTC CATCCAGACAGGCTGCAGTGACATAAACATACATAATGTGAACTGTGGACCAGGGCATGG GATCAGCATTGGTGGTCTAGGAAGGTACAACACAAAAGCATGTGTATCCAATGTCACCGT AAGAGATGTCAACATGTTCAAAACAATGACTGGTGTCAGAATCAAAACTTGGCAGGGAGG TTCAGGGTTGGTTCAAGGCATAAGGTTCTCAAACATACAAGTGTCAGAAGTTCAAACACC TATCATAATAGACCAATTTTACTGTGACAGAACAACTTGCAGAAACCAAACATCAGCAGT GGCGGTTTTAGGTGTTCAGTACGAGAATATCAGGGGGACCTTCACAATCAAGCCTGCCCA TTTTGCATGCAGTGATAGCTCGCCTTGTTCAGAGATCACTCTTACTGGAATACAGCTCAA ACCCCTGATAGTGCCACAGTATCACCTGTACAACCCATTCTGCTGGCAAGCCTTTGGAGA GTTGTCCACCCCCACCATCCCTCCCATATCCTGCTTGCAGATCGGCAAACCATCTGGGAA CAACGTGATGTCAGATTATGATCTATGTTGAAACTCTCTGAATGAGTGGAAATGCTGTGA TCCAGGAAATACTATACTCCTGGTCCTCATTGGTTAGGGTGGTCGTCGTGATTCTTCCGA CCCCCTTTCTGCACAATCATCGTGTGGTGTATATATATACAGTTTATGCAAGGATAGTAT ATGGTTATCAGGACATGTACCAGCTTCCCTCTTGAAGTGAAATGTAGGAATTTGATAATG TAAGGGATAGTGTTCATGCATTGTTCTAGATGCATCATGCATACATACGAGGTAGTACTA GTCACTCTGCTATCAATTTCGGTAATGAAATGGGACCATTCCTCTCTTTCTCAAAAAAAA AGTACTATTAAGATGGATGAAACAGAAAAAAAAAAAAAA



consensusID : consensus_8310#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 686
fasta sequence
                              [TCCCCTCCTGTTGATTGCTCTCAACCGCATCAAATCTGCAACCAATCGGTCTAGCTAATAAGCGTGCGTGCGAGTGGTGTCCGACAGACACGCCTAATGCGGTCGACCTCTAGAGTCCACCTCACCTCGATTCTCCGGCCTCTCTAGCCTTCCCTCACGCGCCCGAACCCGCAGCCTTCTATGGGTCCTTCCACTCTCGAAAATTGTAGCCATTCTTTGCCCAACTCGTAGCTCATCCAACATAGCCGTGCGGGTGCCTGCACCGATCGCTCGCCTTCTCGAGGTGGCACTCGTGATGTCACGCAGCTCATGCCCCTGATAGTTCCCCAGTATCACCTGTACAACCCATTTTGCTGGCAAGCCTTTGGAGAGTTGTNCACCCCCACCATCCCTCCCATATCCTGCTTGCAGATCGGCAAACCATCTGGGAACAACGTGATGTCAGATTATGATCTATGTTGAAACTCTCTGAATGAGTGGAAATGCTGTGATCCAGGAAATACTATACTCCTGGTCCTCATTGGTTAGGGTGGTCGTCGTGATTCTTCCGACCCCCTTTTTGCACAATCATCGTGTGGTGTATATATATACAGTTTATGCAAGGATAGTATATGGTTATCAGGACATGTACCAGCTTCCCTCTTGAAGTGAAATGTAGAAATTTGATAATGTAAAAAAAAAAAAAA]

[-] EMBL CA763035             [TCCCCTCCTGTTGATTGCTCTCAACCGCATCAAATCTGCAACCAATCGGTCTAGCTAATAAGCGTGCGTGCGAGTGGTGTCCGACAGACACGCCTAATGCGGTCGACCTCTAGAGTCCACCTCACCTCGATTCTCCGGCCTCTCTAGCCTTCCCTCACGCGCCCGAACCCGCAGCCTTCTATGGGTCCTTCCACTCTCGAAAATTGTAGCCATTCTTTGCCCAACTCGTAGCTCATCCAACATAGCCGTGCGGGTGCCTGCACCGATCGCTCGCCTTCTCGAGGTGGCACTCGTGATGTCACGCAGCTCATGCCCCTGATAGTTCCCCAGTATCACCTGTACAACCCATTTTGCTGGCAAGCCTTTGGAGAGTTGTNCACCCCCACCATCCCTCCCATATCCTGCTTGCAGATCGGCAAACCATCTGGGAACAACGTGATGTCAGATTATGATCTATGTTGAAACTCTCTGAATGAGTGGAAATGCTGTGATCCAGGAAATACTATACTCCTGGTCCTCATTGGTTAGGGTGGTCGTCGTGATTCTTCCGACCCCCTTTTTGCACAATCATCGTGTGGTGTATATATATACAGTTTATGCAAGGATAGTATATGGTTATCAGGACATGTACCAGCTTCCCTCTTGAAGTGAAATGTAGAAATTTGATAATGTAAAAAAAAAAAAAA]
[-] EMBL CF308329             [                                                                                                                                                                                                                                                                                                                                                                                                                            TCGGCAAACCATCTGGGAACAACGTGATGTCAGATTATGATCTATGTCGAAACTCTCTGAATGAGTGGAAATGCTGTGATCCAGGAAATACTATACTCCTGGTCCTCATTGGTTAGGGTGGTCGTCGTGATTCTTCCGACCCCCTTTCTGCACAATCATCGTGTGGTGTATATATATACAGTTTATGCAAGGATAGTATATGGTTATCAGGACATGTACCAGCTTCCCTCTTGAAGTGAAATGTAGGAATTTGATAATGTAAAAAA        ]


>consensus_8310#1 TCCCCTCCTGTTGATTGCTCTCAACCGCATCAAATCTGCAACCAATCGGTCTAGCTAATA AGCGTGCGTGCGAGTGGTGTCCGACAGACACGCCTAATGCGGTCGACCTCTAGAGTCCAC CTCACCTCGATTCTCCGGCCTCTCTAGCCTTCCCTCACGCGCCCGAACCCGCAGCCTTCT ATGGGTCCTTCCACTCTCGAAAATTGTAGCCATTCTTTGCCCAACTCGTAGCTCATCCAA CATAGCCGTGCGGGTGCCTGCACCGATCGCTCGCCTTCTCGAGGTGGCACTCGTGATGTC ACGCAGCTCATGCCCCTGATAGTTCCCCAGTATCACCTGTACAACCCATTTTGCTGGCAA GCCTTTGGAGAGTTGTNCACCCCCACCATCCCTCCCATATCCTGCTTGCAGATCGGCAAA CCATCTGGGAACAACGTGATGTCAGATTATGATCTATGTTGAAACTCTCTGAATGAGTGG AAATGCTGTGATCCAGGAAATACTATACTCCTGGTCCTCATTGGTTAGGGTGGTCGTCGT GATTCTTCCGACCCCCTTTTTGCACAATCATCGTGTGGTGTATATATATACAGTTTATGC AAGGATAGTATATGGTTATCAGGACATGTACCAGCTTCCCTCTTGAAGTGAAATGTAGAA ATTTGATAATGTAAAAAAAAAAAAAA



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_8310#0      ATCAATTCAAGGAAGTGGTGTCATAAATGGTAGGGGGCAAGAATGGTGGACCTATTCAGA 60
consensus_8310#1      ------------------------------------------------------------
                                                                                  

consensus_8310#0      TCCAAATGACGACGACAATGATGATGTTGATGCTTACAATGTGGAGCTGGAGAAGATGCC 120
consensus_8310#1      ------------------------------------------------------------
                                                                                  

consensus_8310#0      ACAGATTAAACCTACAGCATTGAGGTTTTATGGTAGTTCCAATGTCACAGTAACTGGTAT 180
consensus_8310#1      ------------------------------------------------------------
                                                                                  

consensus_8310#0      CACCATTGTTAACAGCTCACAGTGCCATCTCAAGTTTGATAGCTGTCAAGGAGTAATGGT 240
consensus_8310#1      ------------------------------------------------------------
                                                                                  

consensus_8310#0      TCATGACCTGACCATCTCATCGCCTGAGAACAGTCCCAACACTGATGGAATACACCTGCA 300
consensus_8310#1      ------------------------------------------------------------
                                                                                  

consensus_8310#0      AAATTCCAAACAAGTCAGCATTCACCACTCTAACCTCGCTTGCGGCGATGATTGTGTTTC 360
consensus_8310#1      ------------------------------------------------------------
                                                                                  

consensus_8310#0      CATCCAGACAGGCTGCAGTGACATAAACATACATAATGTGAACTGTGGACCAGGGCATGG 420
consensus_8310#1      ------------------------------------------------------------
                                                                                  

consensus_8310#0      GATCAGCATTGGTGGTCTAGGAAGGTACAACACAAAAGCATGTGTATCCAATGTCACCGT 480
consensus_8310#1      --------------------------TCCCCTCCTGTTGAT-TGCTCTCAACCGCATCAA 33
                                                 *  * *      ** **    ***   ** *  

consensus_8310#0      AAGAGATGTCAACATGTTCAAAACAATGACTG-GTGTCAGAATCAAAACTTGGCAGGGAG 539
consensus_8310#1      ATCTGCAACCAAT-CGGTCTAGCTAATAAGCGTGCGTGCGAGT-GGTGTCCGACAGACAC 91
                      *   *    ***   * ** *   *** *  * * **  ** *        * ***  * 

consensus_8310#0      GTTCAGGGTTGGTTCAAGGCATAAGGTTCTCAAACATACAAGTGTCAGAAGTTCAAACAC 599
consensus_8310#1      GCCTAATGC--GGTCGACCTCTAGAGTCCACCTCACCTCGATTCTCCGGCCTCTCTAGCC 149
                      *   *  *   * ** *    **  ** * *       * * * ** *   *    *  *

consensus_8310#0      CTATCATAATAGACCAATTTTACTGTGACAGAACAACTTGCAGAAACCAAACATCAGCAG 659
consensus_8310#1      TTCCCTCACGCGCCCGAACCCGCAGC----------CTTCTATGGGTC--CTTCCACTCT 197
                       *  *  *   * ** *     * *           ***  *     *      **    

consensus_8310#0      TGGCGGTTTTAGGTGTTCAGTACGAGAATATCAGGGGGACCTTCACAATCAAGCCTGCCC 719
consensus_8310#1      CGAAAATTGTAGCCATTCTTTGCCCAACTCGTAGCTCATCCAACATAGCCGTGCGGG--- 254
                       *    ** ***   ***  * *   * *   **     **  ** *  *  **  *   

consensus_8310#0      ATTTTGCATGCAGTGATAGCTCGCCTTGTTCAGAGATCACTCTTACTGGAATACAGCTCA 779
consensus_8310#1      ----TGCCTGCACCGATCGCTCGCCTTCTCGAGGTGGCACTCGTGATGTCACGCAGCTCA 310
                          *** ****  *** ********* *  **    ***** *  **  *  *******

consensus_8310#0      AACCCCTGATAGTGCCACAGTATCACCTGTACAACCCATTCTGCTGGCAAGCCTTTGGAG 839
consensus_8310#1      TGCCCCTGATAGTTCCCCAGTATCACCTGTACAACCCATTTTGCTGGCAAGCCTTTGGAG 370
                        *********** ** *********************** *******************

consensus_8310#0      AGTTGTCCACCCCCACCATCCCTCCCATATCCTGCTTGCAGATCGGCAAACCATCTGGGA 899
consensus_8310#1      AGTTGTNCACCCCCACCATCCCTCCCATATCCTGCTTGCAGATCGGCAAACCATCTGGGA 430
                      ****** *****************************************************

consensus_8310#0      ACAACGTGATGTCAGATTATGATCTATGTTGAAACTCTCTGAATGAGTGGAAATGCTGTG 959
consensus_8310#1      ACAACGTGATGTCAGATTATGATCTATGTTGAAACTCTCTGAATGAGTGGAAATGCTGTG 490
                      ************************************************************

consensus_8310#0      ATCCAGGAAATACTATACTCCTGGTCCTCATTGGTTAGGGTGGTCGTCGTGATTCTTCCG 1019
consensus_8310#1      ATCCAGGAAATACTATACTCCTGGTCCTCATTGGTTAGGGTGGTCGTCGTGATTCTTCCG 550
                      ************************************************************

consensus_8310#0      ACCCCCTTTCTGCACAATCATCGTGTGGTGTATATATATACAGTTTATGCAAGGATAGTA 1079
consensus_8310#1      ACCCCCTTTTTGCACAATCATCGTGTGGTGTATATATATACAGTTTATGCAAGGATAGTA 610
                      ********* **************************************************

consensus_8310#0      TATGGTTATCAGGACATGTACCAGCTTCCCTCTTGAAGTGAAATGTAGGAATTTGATAAT 1139
consensus_8310#1      TATGGTTATCAGGACATGTACCAGCTTCCCTCTTGAAGTGAAATGTAGAAATTTGATAAT 670
                      ************************************************ ***********

consensus_8310#0      GTAAGGGATAGTGTTCATGCATTGTTCTAGATGCATCATGCATACATACGAGGTAGTACT 1199
consensus_8310#1      GTAAAAAAAAAAAAAA-------------------------------------------- 686
                      ****   * *                                                  

consensus_8310#0      AGTCACTCTGCTATCAATTTCGGTAATGAAATGGGACCATTCCTCTCTTTCTCAAAAAAA 1259
consensus_8310#1      ------------------------------------------------------------
                                                                                  

consensus_8310#0      AAGTACTATTAAGATGGATGAAACAGAAAAAAAAAAAAAA 1299
consensus_8310#1      ----------------------------------------
                                                              




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)